RchiOBHm_Chr2g0094131
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017962
Physical Location & Seq
Reverse (-)
7155608 .. 7157005
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46915

Sequence Viewer

Length: 1398 bp
ATGCAAGATATTCACAGGATCGACACTCAAACACTTAGAAAAAAGCTCCAGGACACAGAAACACCAGGGTCAATAAAGCGCGAGATTAAACGCGAAATAGAAACTAGACAACATGATCAAGATGATGCTGCGACTGCTGTGATTGTGGAAAACACACCTCAAGTAGCAGCTCAACCTGCAAAAGCCTCTCCTTGGTTAATTGACAAGTTGTATGACAAACGTGGACCGGTGCGAGCCAAGGCGTTGGCCGGAGTAATTGCACTGCTAAACCAAGAGTTGGATCATGAAGACTTGAAAAAGAATTATGTTGTAGAGCTTCTCTACCGATGCTTGTGCGGTGTAAAGAAGGGTTCCACCAAAGAGGTTCAGTATTCATTGAAAGTTATCGGCTTGCTCTCAATCATCGTCGATTGTCAAGACAAGATGTCTGAAATTTACAGGGAGTTTCTTGCTGTATCTTCCACCAGTGCTTGTCTAAAGAAGGCTGGAACCAACACAACAAAGATGTTGGAATGTTTGGGAGTTGTTACCTTTTTCGGTGGAATTAATGCAGAGGAGACTCAAGCTGGAATGAAGGTTATTTGGGACTTCATGATGAATTTCAAATCGGAATCCGGTAGTGATGATGTAAATAACCGAAAGAAGCATTCTTCGGAGATCCTAGTTGCTGCAATATATTCTTGGCTGTTTCTTCTTACTAGCATGGAAAAAGGGGGATTGAACTATTGGACAGGGGCAATTTCCTTCTTCATGAACCTGTTGGACAACAATGATGACATAGTTCATGCGGCAGCATGTGAAGCACTAGCATTGATTTTCGAGATTGATAGCCTTGACAAATTCTGGAATGGAGCAAATGATTCAAGCTTGCCATATTCGCAGTTGAGAAAAACACTCAGGGAGATGATTTTGAAGAAATTGAGCAGTCTAAACATGAACTCACATGTTGTGAAGTATTTCAAGACTCTTCATTTCCCGGGAAAACGTATACCTCTTTGTGAAAAAGAACTGGTATTACCGTCATGGTATCGGCTGATTCAATTCAATTATTTGAGGAGTCTGCTAGGGAATGAGTTTGAAAACTACATGGCCAAGGAAAACAAACTCCAGAACTTTTTTGAGTTCGACCCTTATAGAAACAACAATGTGGGTGAAGAACAACTATATGAGTCTACGATCGTAAAGAATCAAAAGAACACGGCAAAAAATTCCATGCCAGAAGGAAGAGATCCACAAACACTGACAGCAAAACAAAGGAAGGAAGAGAAAGTTCGGAGAACTTCTTTGCGGAACAAAGAACAGACAAAACTAAGGAACAAAGACAGGGAAATGTCGGAGGAATTGAAGTGGTTGGATGGAGACAAAATTAATTTTTCTCTTTTGTTCACCGAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

465

Amino Acids

53.43

Weight (kDa)

8.44

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 66 - 315 1.1e-36 Interferon-related developmental regulator (IFRD)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017962)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08070 FvH4_5g33120
rosa_chinensis RchiOBHm_Chr2g0094131
rosa_laevigata RLG00000016458
rosa_multiflora Rmu_ssc0000149.1_g000004
rosa_roxburghii Rroxscaffold_2G00149030
rosa_rugosa Rorug02G0041100
rosa_samantha Rh2AG088800 Rh2BG088900 Rh2CG091300 Rh2DG087900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 184
AccB7I CCANNNNNTGG 1 cut(s) 277
AccI GTMKAC 2 cut(s) 988, 1172
AccII CGCG 2 cut(s) 81, 93
AciI CCGC 3 cut(s) 336, 788, 1288
AclWI GGATC 4 cut(s) 26, 288, 652, 1223
AcoI YGGCCR 2 cut(s) 246, 1089
AcsI RAATTY 5 cut(s) 432, 598, 839, 1207, 1392
AfiI CCNNNNNNNGG 2 cut(s) 192, 277
AflIII ACRYGT 1 cut(s) 943
AgeI ACCGGT 1 cut(s) 226
AhdI GACNNNNNGTC 1 cut(s) 424
AjnI CCWGG 2 cut(s) 48, 64
AluBI AGCT 5 cut(s) 46, 170, 316, 566, 867
AluI AGCT 5 cut(s) 46, 170, 316, 566, 867
Alw26I GTCTC 2 cut(s) 551, 1353
AlwI GGATC 4 cut(s) 26, 288, 652, 1223
Ama87I CYCGRG 1 cut(s) 976
AoxI GGCC 2 cut(s) 246, 1089
ApeKI GCWGC 4 cut(s) 128, 167, 668, 791
ApoI RAATTY 5 cut(s) 432, 598, 839, 1207, 1392
AseI ATTAAT 2 cut(s) 546, 1368
AsiGI ACCGGT 1 cut(s) 226
Asp700I GAANNNNTTC 1 cut(s) 956
AspLEI GCGC 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 224
AsuC2I CCSGG 2 cut(s) 977, 978
AsuHPI GGTGA 2 cut(s) 1163, 1378
AvaI CYCGRG 1 cut(s) 976
AvaII GGWCC 1 cut(s) 224
BalI TGGCCA 1 cut(s) 1091
BbsI GAAGAC 1 cut(s) 294
BbvI GCAGC 4 cut(s) 115, 179, 655, 803
BccI CCATC 1 cut(s) 1349
BceAI ACGGC 1 cut(s) 1215
BcgI CGANNNNNNTGC 2 cut(s) 315, 349
BciT130I CCWGG 2 cut(s) 50, 66
BclI TGATCA 1 cut(s) 115
BcnI CCSGG 2 cut(s) 977, 978
BcoDI GTCTC 2 cut(s) 551, 1353
BfaI CTAG 5 cut(s) 105, 662, 699, 806, 1064
BfuAI ACCTGC 1 cut(s) 184
BisI GCNGC 5 cut(s) 129, 168, 669, 789, 792
BlsI GCNGC 5 cut(s) 130, 169, 670, 790, 793
Bme1390I CCNGG 4 cut(s) 50, 66, 977, 978
Bme18I GGWCC 1 cut(s) 224
BmeRI GACNNNNNGTC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 976
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 2 cut(s) 352, 490
BmrFI CCNGG 4 cut(s) 50, 66, 977, 978
BmsI GCATC 2 cut(s) 115, 317
BpiI GAAGAC 1 cut(s) 294
BpmI CTGGAG 2 cut(s) 32, 1091
BpuEI CTTGAG 2 cut(s) 144, 546
BpuMI CCSGG 2 cut(s) 977, 978
BsaJI CCNNGG 5 cut(s) 65, 191, 237, 976, 1092
BsaWI WCCGGW 2 cut(s) 226, 614
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 277
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 2 cut(s) 465, 1014
BseBI CCWGG 2 cut(s) 50, 66
BseDI CCNNGG 5 cut(s) 65, 191, 237, 976, 1092
BseGI GGATG 1 cut(s) 1360
BseLI CCNNNNNNNGG 2 cut(s) 192, 277
BseMII CTCAG 1 cut(s) 910
BseNI ACTGG 2 cut(s) 465, 1014
BseRI GAGGAG 2 cut(s) 569, 1069
BseXI GCAGC 4 cut(s) 115, 179, 655, 803
Bsh1236I CGCG 2 cut(s) 81, 93
Bsh1285I CGRYCG 1 cut(s) 1179
BshFI GGCC 2 cut(s) 248, 1091
BshTI ACCGGT 1 cut(s) 226
BsiEI CGRYCG 1 cut(s) 1179
BsiHKCI CYCGRG 1 cut(s) 976
BsiSI CCGG 4 cut(s) 227, 249, 615, 977
BslFI GGGAC 1 cut(s) 599
BslI CCNNNNNNNGG 2 cut(s) 192, 277
BsmAI GTCTC 2 cut(s) 551, 1353
BsmFI GGGAC 1 cut(s) 599
BsmI GAATGC 1 cut(s) 646
BsnI GGCC 2 cut(s) 248, 1091
BsoBI CYCGRG 1 cut(s) 976
Bsp143I GATC 6 cut(s) 18, 115, 280, 657, 1176, 1228
BspACI CCGC 3 cut(s) 336, 788, 1288
BspANI GGCC 2 cut(s) 248, 1091
BspCNI CTCAG 1 cut(s) 909
BspFNI CGCG 2 cut(s) 81, 93
BspHI TCATGA 3 cut(s) 283, 591, 750
BspLI GGNNCC 2 cut(s) 352, 490
BspMI ACCTGC 1 cut(s) 184
BspPI GGATC 4 cut(s) 26, 288, 652, 1223
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 2 cut(s) 465, 1014
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 5 cut(s) 65, 191, 237, 976, 1092
BssMI GATC 6 cut(s) 18, 115, 280, 657, 1176, 1228
BssNAI GTATAC 1 cut(s) 989
BssT1I CCWWGG 3 cut(s) 191, 237, 1092
Bst1107I GTATAC 1 cut(s) 989
Bst2UI CCWGG 2 cut(s) 50, 66
Bst4CI ACNGT 1 cut(s) 1020
Bst6I CTCTTC 3 cut(s) 972, 1219, 1257
BstC8I GCNNGC 3 cut(s) 234, 392, 869
BstDEI CTNAG 3 cut(s) 35, 896, 1310
BstF5I GGATG 1 cut(s) 1360
BstFNI CGCG 2 cut(s) 81, 93
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 6 cut(s) 21, 118, 283, 660, 1179, 1231
BstMAI GTCTC 2 cut(s) 551, 1353
BstMBI GATC 6 cut(s) 18, 115, 280, 657, 1176, 1228
BstMCI CGRYCG 1 cut(s) 1179
BstMWI GCNNNNNNNGC 4 cut(s) 134, 176, 800, 877
BstNI CCWGG 2 cut(s) 50, 66
BstNSI RCATGY 2 cut(s) 798, 947
BstSCI CCNGG 4 cut(s) 48, 64, 975, 976
BstUI CGCG 2 cut(s) 81, 93
BstV1I GCAGC 4 cut(s) 115, 179, 655, 803
BstV2I GAAGAC 1 cut(s) 294
BstX2I RGATCY 2 cut(s) 657, 1228
BstXI CCANNNNNNTGG 1 cut(s) 244
BstYI RGATCY 2 cut(s) 657, 1228
BstZ17I GTATAC 1 cut(s) 989
BsuRI GGCC 2 cut(s) 248, 1091
BtsCI GGATG 1 cut(s) 1360
BtsI GCAGTG 1 cut(s) 260
BtsIMutI CAGTG 3 cut(s) 260, 472, 1238
BveI ACCTGC 1 cut(s) 184
Cac8I GCNNGC 3 cut(s) 234, 392, 869
CciI TCATGA 3 cut(s) 283, 591, 750
CfoI GCGC 1 cut(s) 81
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 224
Cfr9I CCCGGG 1 cut(s) 976
CspAI ACCGGT 1 cut(s) 226
DdeI CTNAG 3 cut(s) 35, 896, 1310
DpnI GATC 6 cut(s) 20, 117, 282, 659, 1178, 1230
DpnII GATC 6 cut(s) 18, 115, 280, 657, 1176, 1228
DriI GACNNNNNGTC 1 cut(s) 424
EaeI YGGCCR 2 cut(s) 246, 1089
Eam1104I CTCTTC 3 cut(s) 972, 1219, 1257
Eam1105I GACNNNNNGTC 1 cut(s) 424
EarI CTCTTC 3 cut(s) 972, 1219, 1257
Eco130I CCWWGG 3 cut(s) 191, 237, 1092
Eco47I GGWCC 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 976
EcoRII CCWGG 2 cut(s) 48, 64
EcoT14I CCWWGG 3 cut(s) 191, 237, 1092
ErhI CCWWGG 3 cut(s) 191, 237, 1092
FaqI GGGAC 1 cut(s) 599
FbaI TGATCA 1 cut(s) 115
FblI GTMKAC 2 cut(s) 988, 1172
Fnu4HI GCNGC 5 cut(s) 129, 168, 669, 789, 792
FokI GGATG 1 cut(s) 1367
Fsp4HI GCNGC 5 cut(s) 129, 168, 669, 789, 792
FspBI CTAG 5 cut(s) 105, 662, 699, 806, 1064
GlaI GCGC 1 cut(s) 80
GluI GCNGC 5 cut(s) 129, 168, 669, 789, 792
GsuI CTGGAG 2 cut(s) 32, 1091
HaeIII GGCC 2 cut(s) 248, 1091
HapII CCGG 4 cut(s) 227, 249, 615, 977
HhaI GCGC 1 cut(s) 81
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HindIII AAGCTT 1 cut(s) 865
HinfI GANTC 8 cut(s) 559, 611, 860, 964, 1036, 1057, 1169, 1186
HpaII CCGG 4 cut(s) 227, 249, 615, 977
HphI GGTGA 2 cut(s) 1163, 1378
Hpy166II GTNNAC 4 cut(s) 224, 989, 1173, 1386
Hpy188I TCNGA 5 cut(s) 430, 610, 655, 1275, 1336
Hpy188III TCNNGA 9 cut(s) 119, 284, 416, 592, 751, 820, 844, 961, 1108
Hpy8I GTNNAC 4 cut(s) 224, 989, 1173, 1386
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 6 cut(s) 340, 475, 568, 754, 1214, 1252
HpyCH4III ACNGT 1 cut(s) 1020
HpyCH4IV ACGT 2 cut(s) 220, 985
HpyCH4V TGCA 5 cut(s) 4, 179, 260, 551, 671
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 176, 800, 877
HpyF3I CTNAG 3 cut(s) 35, 896, 1310
HpySE526I ACGT 2 cut(s) 220, 985
HspAI GCGC 1 cut(s) 79
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 6 cut(s) 18, 115, 280, 657, 1176, 1228
LmnI GCTCC 2 cut(s) 51, 851
Lsp1109I GCAGC 4 cut(s) 115, 179, 655, 803
LweI GCATC 2 cut(s) 115, 317
MaeI CTAG 5 cut(s) 105, 662, 699, 806, 1064
MaeII ACGT 2 cut(s) 220, 985
MaeIII GTNAC 1 cut(s) 526
MalI GATC 6 cut(s) 20, 117, 282, 659, 1178, 1230
MboI GATC 6 cut(s) 18, 115, 280, 657, 1176, 1228
MflI RGATCY 2 cut(s) 657, 1228
MlsI TGGCCA 1 cut(s) 1091
MluNI TGGCCA 1 cut(s) 1091
MlyI GAGTC 4 cut(s) 553, 958, 1066, 1178
MmeI TCCRAC 5 cut(s) 258, 489, 741, 1314, 1332
MnlI CCTC 7 cut(s) 168, 196, 355, 547, 1002, 1047, 1330
Mox20I TGGCCA 1 cut(s) 1091
MroXI GAANNNNTTC 1 cut(s) 956
MscI TGGCCA 1 cut(s) 1091
MseI TTAA 4 cut(s) 87, 197, 546, 1368
Msp20I TGGCCA 1 cut(s) 1091
MspI CCGG 4 cut(s) 227, 249, 615, 977
MspR9I CCNGG 4 cut(s) 50, 66, 977, 978
Mva1269I GAATGC 1 cut(s) 646
MvaI CCWGG 2 cut(s) 50, 66
MvnI CGCG 2 cut(s) 81, 93
MwoI GCNNNNNNNGC 4 cut(s) 134, 176, 800, 877
NciI CCSGG 2 cut(s) 977, 978
NdeII GATC 6 cut(s) 18, 115, 280, 657, 1176, 1228
NlaIV GGNNCC 2 cut(s) 352, 490
NspI RCATGY 2 cut(s) 798, 947
PagI TCATGA 3 cut(s) 283, 591, 750
PciI ACATGT 1 cut(s) 943
PctI GAATGC 1 cut(s) 646
PdmI GAANNNNTTC 1 cut(s) 956
PfeI GAWTC 4 cut(s) 611, 860, 1036, 1186
PflMI CCANNNNNTGG 1 cut(s) 277
PfoI TCCNGGA 1 cut(s) 48
PinAI ACCGGT 1 cut(s) 226
PkrI GCNGC 5 cut(s) 130, 169, 670, 790, 793
Ple19I CGATCG 1 cut(s) 1179
PleI GAGTC 4 cut(s) 553, 958, 1065, 1177
PpsI GAGTC 4 cut(s) 553, 958, 1065, 1177
PscI ACATGT 1 cut(s) 943
PshBI ATTAAT 2 cut(s) 546, 1368
Psp6I CCWGG 2 cut(s) 48, 64
PspGI CCWGG 2 cut(s) 48, 64
PspN4I GGNNCC 2 cut(s) 352, 490
PspPI GGNCC 1 cut(s) 224
PsrI GAACNNNNNNTAC 2 cut(s) 999, 1031
PsuI RGATCY 2 cut(s) 657, 1228
PvuI CGATCG 1 cut(s) 1179
SaqAI TTAA 4 cut(s) 87, 197, 546, 1368
SatI GCNGC 5 cut(s) 129, 168, 669, 789, 792
Sau3AI GATC 6 cut(s) 18, 115, 280, 657, 1176, 1228
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 4 cut(s) 553, 958, 1066, 1178
ScrFI CCNGG 4 cut(s) 50, 66, 977, 978
SfaNI GCATC 2 cut(s) 115, 317
SinI GGWCC 1 cut(s) 224
SmaI CCCGGG 1 cut(s) 978
SmlI CTYRAG 2 cut(s) 159, 561
SmoI CTYRAG 2 cut(s) 159, 561
SsiI CCGC 3 cut(s) 336, 788, 1288
SspMI CTAG 5 cut(s) 105, 662, 699, 806, 1064
StyD4I CCNGG 4 cut(s) 48, 64, 975, 976
StyI CCWWGG 3 cut(s) 191, 237, 1092
TaaI ACNGT 1 cut(s) 1020
TaiI ACGT 2 cut(s) 223, 988
TaqI TCGA 4 cut(s) 21, 408, 819, 1125
TauI GCSGC 1 cut(s) 791
TfiI GAWTC 4 cut(s) 611, 860, 1036, 1186
Tru1I TTAA 4 cut(s) 87, 197, 546, 1368
Tru9I TTAA 4 cut(s) 87, 197, 546, 1368
TscAI CASTG 3 cut(s) 267, 472, 1245
TseI GCWGC 4 cut(s) 128, 167, 668, 791
TspMI CCCGGG 1 cut(s) 976
TspRI CASTG 3 cut(s) 267, 472, 1245
Van91I CCANNNNNTGG 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 224
VspI ATTAAT 2 cut(s) 546, 1368
XapI RAATTY 5 cut(s) 432, 598, 839, 1207, 1392
XceI RCATGY 2 cut(s) 798, 947
XmaI CCCGGG 1 cut(s) 976
XmiI GTMKAC 2 cut(s) 988, 1172
XmnI GAANNNNTTC 1 cut(s) 956
XspI CTAG 5 cut(s) 105, 662, 699, 806, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.