Rorug02G0041100
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0017962
Physical Location & Seq
Reverse (-)
3218210 .. 3218575
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0041100.1

Sequence Viewer

Length: 366 bp
ATGGCCTCCATTGATGCTATCACTGCTAGCTGTGCTGCCTCCCTTGCGCTTGCAGAGGGAGGTAGTGCTCCTGATTTGGGGAGAATTGGTGGCGGCCCTATTCATCGGTTTTCCAAATATTTTCTGATTGGGAAGTCTCTGATCTGCCGACCGGTCAACCCTACGGCCTTCAAGGCTCACCTCTTTTGTACCTGGATAGATGTCACTCTGGTGATGTTGAAGAAGAAGTCAGGCAAGCTACTTGGGAGTAGGAACAAGAATCATCGCCCTAGCAAGAAGTCGAATGTCGTTGCTTTACGACTCTCTTACCCTGCAGTTACTGGTATTGATCCCAGCCCTAGCGACAAGGGCAAGGGAAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

121

Amino Acids

12.79

Weight (kDa)

10.19

Isoelectric Point (pI)

30.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017962)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08070 FvH4_5g33120
rosa_chinensis RchiOBHm_Chr2g0094131
rosa_laevigata RLG00000016458
rosa_multiflora Rmu_ssc0000149.1_g000004
rosa_roxburghii Rroxscaffold_2G00149030
rosa_rugosa Rorug02G0041100
rosa_samantha Rh2AG088800 Rh2BG088900 Rh2CG091300 Rh2DG087900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 93
AclWI GGATC 1 cut(s) 323
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 77
AgeI ACCGGT 1 cut(s) 151
AgsI TTSAA 2 cut(s) 172, 220
AjnI CCWGG 1 cut(s) 191
AleI CACNNNNGTG 1 cut(s) 209
AluBI AGCT 3 cut(s) 30, 238, 361
AluI AGCT 3 cut(s) 30, 238, 361
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 1 cut(s) 323
AlwNI CAGNNNCTG 1 cut(s) 320
AoxI GGCC 3 cut(s) 3, 94, 165
ApeKI GCWGC 1 cut(s) 35
AsiGI ACCGGT 1 cut(s) 151
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 170, 223
AsuNHI GCTAGC 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 22
BceAI ACGGC 1 cut(s) 180
BciT130I CCWGG 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 3 cut(s) 27, 270, 339
BfmI CTRYAG 1 cut(s) 312
BglI GCCNNNNNGGC 1 cut(s) 173
BisI GCNGC 2 cut(s) 36, 94
BlsI GCNGC 2 cut(s) 37, 95
Bme1390I CCNGG 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 193
BmsI GCATC 1 cut(s) 4
BmtI GCTAGC 1 cut(s) 30
BsaWI WCCGGW 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse118I RCCGGY 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 325
BseBI CCWGG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 325
BseXI GCAGC 1 cut(s) 22
BseYI CCCAGC 1 cut(s) 332
Bsh1285I CGRYCG 1 cut(s) 152
BshFI GGCC 3 cut(s) 5, 96, 167
BshTI ACCGGT 1 cut(s) 151
BsiEI CGRYCG 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 141
BsnI GGCC 3 cut(s) 5, 96, 167
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 2 cut(s) 141, 328
BspACI CCGC 1 cut(s) 93
BspANI GGCC 3 cut(s) 5, 96, 167
BspMAI CTGCAG 1 cut(s) 316
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 1 cut(s) 323
BsrFI RCCGGY 1 cut(s) 151
BsrI ACTGG 1 cut(s) 325
BssAI RCCGGY 1 cut(s) 151
BssMI GATC 2 cut(s) 141, 328
Bst2UI CCWGG 1 cut(s) 193
BstC8I GCNNGC 3 cut(s) 28, 51, 236
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 2 cut(s) 144, 331
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 2 cut(s) 141, 328
BstMCI CGRYCG 1 cut(s) 152
BstMWI GCNNNNNNNGC 5 cut(s) 23, 32, 44, 173, 348
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 191
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 22
BsuRI GGCC 3 cut(s) 5, 96, 167
BtgZI GCGATG 1 cut(s) 248
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 3 cut(s) 28, 51, 236
CaiI CAGNNNCTG 1 cut(s) 320
CfoI GCGC 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 189
CspAI ACCGGT 1 cut(s) 151
CviJI RGCY 8 cut(s) 5, 30, 96, 167, 176, 238, 336, 361
CviKI_1 RGCY 8 cut(s) 5, 30, 96, 167, 176, 238, 336, 361
CviQI GTAC 1 cut(s) 189
DpnI GATC 2 cut(s) 143, 330
DpnII GATC 2 cut(s) 141, 328
EcoRII CCWGG 1 cut(s) 191
Fnu4HI GCNGC 2 cut(s) 36, 94
Fsp4HI GCNGC 2 cut(s) 36, 94
FspBI CTAG 3 cut(s) 27, 270, 339
GlaI GCGC 1 cut(s) 48
GluI GCNGC 2 cut(s) 36, 94
GsaI CCCAGC 1 cut(s) 336
HaeIII GGCC 3 cut(s) 5, 96, 167
HapII CCGG 1 cut(s) 152
HhaI GCGC 1 cut(s) 49
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 2 cut(s) 259, 300
HpaII CCGG 1 cut(s) 152
HphI GGTGA 2 cut(s) 170, 223
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 126, 141
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 178
HpyCH4V TGCA 2 cut(s) 53, 314
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 32, 44, 173, 348
HspAI GCGC 1 cut(s) 47
Kzo9I GATC 2 cut(s) 141, 328
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 9 cut(s) 84, 165, 178, 194, 205, 216, 306, 324, 346
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 1 cut(s) 4
MaeI CTAG 3 cut(s) 27, 270, 339
MaeIII GTNAC 2 cut(s) 202, 316
MalI GATC 2 cut(s) 143, 330
MboI GATC 2 cut(s) 141, 328
MboII GAAGA 2 cut(s) 232, 235
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 1 cut(s) 84
MlyI GAGTC 1 cut(s) 294
MnlI CCTC 5 cut(s) 16, 49, 49, 53, 191
MslI CAYNNNNRTG 1 cut(s) 209
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 193
MvaI CCWGG 1 cut(s) 193
MwoI GCNNNNNNNGC 5 cut(s) 23, 32, 44, 173, 348
NdeII GATC 2 cut(s) 141, 328
NheI GCTAGC 1 cut(s) 26
NmuCI GTSAC 1 cut(s) 202
OliI CACNNNNGTG 1 cut(s) 209
PfeI GAWTC 1 cut(s) 259
PinAI ACCGGT 1 cut(s) 151
PkrI GCNGC 2 cut(s) 37, 95
PleI GAGTC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 191
PspFI CCCAGC 1 cut(s) 332
PspGI CCWGG 1 cut(s) 191
PspPI GGNCC 1 cut(s) 95
PstI CTGCAG 1 cut(s) 316
PstNI CAGNNNCTG 1 cut(s) 320
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 209
SatI GCNGC 2 cut(s) 36, 94
Sau3AI GATC 2 cut(s) 141, 328
Sau96I GGNCC 1 cut(s) 95
SchI GAGTC 1 cut(s) 294
ScrFI CCNGG 1 cut(s) 193
SduI GDGCHC 1 cut(s) 70
SetI ASST 6 cut(s) 32, 64, 183, 194, 240, 363
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 1 cut(s) 312
SmiMI CAYNNNNRTG 1 cut(s) 209
Sse9I AATT 1 cut(s) 84
SsiI CCGC 1 cut(s) 93
SspI AATATT 1 cut(s) 119
SspMI CTAG 3 cut(s) 27, 270, 339
StyD4I CCNGG 1 cut(s) 191
TaqI TCGA 1 cut(s) 281
TasI AATT 1 cut(s) 84
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 1 cut(s) 259
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 92
TspRI CASTG 1 cut(s) 28
XspI CTAG 3 cut(s) 27, 270, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.