Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0011508

Physical Location & Seq

Genomic Coordinates Reverse (-)

4317940 .. 4321897

Gene Structure 3958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08160.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGCCCCTTAATACTAATTGCATGTCTTGGAATCCAAATGAACGACAAGTTTCACCTCCTGTATCTAAGGATGTGAGCTTCAAAATGGAACTTCCACCACAACTTCATCATGATGCAAAGCATTTAGGCCTTCAAGTACAACCTGACCCCGGATCAGGCACAACACAGTCAATTGGTCAATCTCAAGGTCAATGCGTTTCTTCTGAATCTGGTGAGGATGATGCTCGTGGCAAGGGTGTTGAAGGGACAATGAAGCCAGCTTTCTTGAGTAATTTAGATTTCATGCCGCATCCTTCTCAAGCTGGTTACAGCAATGTAGTGACTCAATTCCATCCTTATGCTGATCCTTACTATGGTGCATTTGTGACTCCCTATGGCCCACAGGCTATGCCCCCTATGGTTGGGATGGGACCTCCACGAGTTCCATTGCCTCTTGATCTTCAAGAAGACGGACCCATTTACGTCAATGCAAAACAGTACCATGGAATCCTCCGAAGGAGACAGTCACGTGCAAAGCTGGAGGCTCAAAACAAACTTCTAAAAGCTCGAAAGCCATATCTTCATGAGTCTCGGCATCAACATGCACTGAATAGGGTTAGGGGTTCTGGTGGACGTTTTCTCAGCAAAAAGGAGCTCCAACAATATGATCAGAACCACACCAGTAGCTCCAATGATCATGTCTCGGGTTCTATCGACTTCCATCAGAAGGATACACCACAGAGAGAAAATCATCACTCGGGAAGCAATGATCTAGTCACTTCTGTTGCAAGTCACTCGGGCATAACAAGTGTTTCTGGTACCAATGCTATGTTTCGGCAGCCAGACCGCAGGTTCTCAGGTGGCATGTCTTCCCACATGAGTGGAGCCATGCAATTCAGTGGGAGGCTTATGGGCGGTGGAAACCAGCACTGTGCTTCTGTTGTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

310

Amino Acids

33.92

Weight (kDa)

9.22

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	152 - 206	5.1e-28	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011508)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08160 FvH4_1g08160 FvH4_1g08160
malus_domestica	MD02G1086200.v1.1 MD15G1213400.v1.1
prunus_persica	Prupe.7G203500_v2.0.a1
pyrus_communis	pycom02g06940 pycom15g18980
rosa_chinensis	RchiOBHm_Chr2g0094231
rosa_laevigata	RLG00000016468
rosa_multiflora	Rmu_sc0002193.1_g000009 Rmu_sc0006198.1_g000014
rosa_roxburghii	Rroxscaffold_2G00147350
rosa_rugosa	Rorug02G0042000 Rorug02G0042100 Rorug02G0042200
rosa_samantha	Rh2AG089800 Rh2BG089900 Rh2CG092400 Rh2DG088700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	819
Acc65I	GGTACC	1 cut(s)	797
AccB1I	GGYRCC	1 cut(s)	797
AciI	CCGC	3 cut(s)	287, 826, 894
AclWI	GGATC	2 cut(s)	160, 338
AcvI	CACGTG	1 cut(s)	509
AfaI	GTAC	3 cut(s)	138, 479, 799
AfiI	CCNNNNNNNGG	5 cut(s)	149, 155, 353, 401, 706
AgsI	TTSAA	4 cut(s)	82, 134, 242, 443
AleI	CACNNNNGTG	1 cut(s)	858
AluBI	AGCT	7 cut(s)	78, 260, 302, 517, 545, 634, 666
AluI	AGCT	7 cut(s)	78, 260, 302, 517, 545, 634, 666
Alw21I	GWGCWC	1 cut(s)	636
Alw26I	GTCTC	3 cut(s)	493, 573, 685
AlwI	GGATC	2 cut(s)	160, 338
Ama87I	CYCGRG	3 cut(s)	682, 736, 775
AoxI	GGCC	2 cut(s)	127, 376
ApeKI	GCWGC	1 cut(s)	817
Asp718I	GGTACC	1 cut(s)	797
AspS9I	GGNCC	3 cut(s)	377, 410, 452
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	45, 224
AvaI	CYCGRG	3 cut(s)	682, 736, 775
AvaII	GGWCC	2 cut(s)	410, 452
BanI	GGYRCC	1 cut(s)	797
BanII	GRGCYC	1 cut(s)	636
BauI	CACGAG	2 cut(s)	225, 417
BbrPI	CACGTG	1 cut(s)	509
BbsI	GAAGAC	2 cut(s)	453, 840
Bbv12I	GWGCWC	1 cut(s)	636
BbvI	GCAGC	1 cut(s)	829
BccI	CCATC	3 cut(s)	339, 400, 708
BcgI	CGANNNNNNTGC	2 cut(s)	756, 790
BciVI	GTATCC	1 cut(s)	703
BclI	TGATCA	2 cut(s)	646, 673
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	3 cut(s)	493, 573, 685
BfaI	CTAG	1 cut(s)	752
BfuAI	ACCTGC	1 cut(s)	819
BfuI	GTATCC	1 cut(s)	703
BisI	GCNGC	2 cut(s)	287, 818
BlsI	GCNGC	2 cut(s)	288, 819
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	2 cut(s)	410, 452
BmeT110I	CYCGRG	3 cut(s)	682, 736, 775
BmgT120I	GGNCC	3 cut(s)	377, 410, 452
BmiI	GGNNCC	4 cut(s)	411, 454, 799, 865
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	4 cut(s)	103, 211, 298, 583
BpiI	GAAGAC	2 cut(s)	453, 840
BpmI	CTGGAG	1 cut(s)	539
BpuEI	CTTGAG	3 cut(s)	168, 282, 286
BpuMI	CCSGG	1 cut(s)	150
BsaAI	YACGTR	1 cut(s)	509
BsaJI	CCNNGG	2 cut(s)	148, 481
BsaWI	WCCGGW	1 cut(s)	924
Bsc4I	CCNNNNNNNGG	5 cut(s)	149, 155, 353, 401, 706
Bse1I	ACTGG	1 cut(s)	660
Bse3DI	GCAATG	3 cut(s)	319, 425, 751
BseDI	CCNNGG	2 cut(s)	148, 481
BseGI	GGATG	5 cut(s)	76, 223, 289, 331, 411
BseLI	CCNNNNNNNGG	5 cut(s)	149, 155, 353, 401, 706
BseMI	GCAATG	3 cut(s)	319, 425, 751
BseMII	CTCAG	2 cut(s)	634, 849
BseNI	ACTGG	1 cut(s)	660
BseXI	GCAGC	1 cut(s)	829
BshFI	GGCC	2 cut(s)	129, 378
BshNI	GGYRCC	1 cut(s)	797
BsiHKAI	GWGCWC	1 cut(s)	636
BsiHKCI	CYCGRG	3 cut(s)	682, 736, 775
BsiSI	CCGG	2 cut(s)	150, 925
BslFI	GGGAC	2 cut(s)	259, 423
BslI	CCNNNNNNNGG	5 cut(s)	149, 155, 353, 401, 706
BsmAI	GTCTC	3 cut(s)	493, 573, 685
BsmFI	GGGAC	2 cut(s)	259, 423
BsnI	GGCC	2 cut(s)	129, 378
BsoBI	CYCGRG	3 cut(s)	682, 736, 775
Bsp1286I	GDGCHC	1 cut(s)	636
Bsp143I	GATC	6 cut(s)	152, 343, 436, 646, 673, 748
Bsp19I	CCATGG	1 cut(s)	481
BspACI	CCGC	3 cut(s)	287, 826, 894
BspANI	GGCC	2 cut(s)	129, 378
BspCNI	CTCAG	2 cut(s)	633, 848
BspHI	TCATGA	2 cut(s)	109, 562
BspLI	GGNNCC	4 cut(s)	411, 454, 799, 865
BspMI	ACCTGC	1 cut(s)	819
BspPI	GGATC	2 cut(s)	160, 338
BspT107I	GGYRCC	1 cut(s)	797
BsrDI	GCAATG	3 cut(s)	319, 425, 751
BsrI	ACTGG	1 cut(s)	660
BssECI	CCNNGG	2 cut(s)	148, 481
BssMI	GATC	6 cut(s)	152, 343, 436, 646, 673, 748
BssSI	CACGAG	2 cut(s)	225, 417
BssT1I	CCWWGG	1 cut(s)	481
Bst2BI	CACGAG	2 cut(s)	225, 417
Bst4CI	ACNGT	4 cut(s)	168, 477, 504, 911
BstBAI	YACGTR	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	3 cut(s)	66, 620, 835
BstDSI	CCRYGG	1 cut(s)	481
BstF5I	GGATG	5 cut(s)	76, 223, 289, 331, 411
BstKTI	GATC	6 cut(s)	155, 346, 439, 649, 676, 751
BstMAI	GTCTC	3 cut(s)	493, 573, 685
BstMBI	GATC	6 cut(s)	152, 343, 436, 646, 673, 748
BstNSI	RCATGY	3 cut(s)	25, 584, 847
BstSCI	CCNGG	1 cut(s)	148
BstV1I	GCAGC	1 cut(s)	829
BstV2I	GAAGAC	2 cut(s)	453, 840
BstXI	CCANNNNNNTGG	1 cut(s)	860
BsuI	GTATCC	1 cut(s)	703
BsuRI	GGCC	2 cut(s)	129, 378
BtgI	CCRYGG	1 cut(s)	481
BtsCI	GGATG	5 cut(s)	76, 223, 289, 331, 411
BtsIMutI	CAGTG	3 cut(s)	584, 883, 907
BveI	ACCTGC	1 cut(s)	819
Cac8I	GCNNGC	1 cut(s)	258
CciI	TCATGA	2 cut(s)	109, 562
Cfr13I	GGNCC	3 cut(s)	377, 410, 452
Csp6I	GTAC	3 cut(s)	137, 478, 798
CviQI	GTAC	3 cut(s)	137, 478, 798
DdeI	CTNAG	3 cut(s)	66, 620, 835
DpnI	GATC	6 cut(s)	154, 345, 438, 648, 675, 750
DpnII	GATC	6 cut(s)	152, 343, 436, 646, 673, 748
Ecl136II	GAGCTC	1 cut(s)	634
Eco130I	CCWWGG	1 cut(s)	481
Eco147I	AGGCCT	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	636
Eco47I	GGWCC	2 cut(s)	410, 452
Eco53kI	GAGCTC	1 cut(s)	634
Eco72I	CACGTG	1 cut(s)	509
Eco88I	CYCGRG	3 cut(s)	682, 736, 775
EcoICRI	GAGCTC	1 cut(s)	634
EcoO109I	RGGNCCY	1 cut(s)	410
EcoT14I	CCWWGG	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	636
ErhI	CCWWGG	1 cut(s)	481
FaqI	GGGAC	2 cut(s)	259, 423
FbaI	TGATCA	2 cut(s)	646, 673
Fnu4HI	GCNGC	2 cut(s)	287, 818
FokI	GGATG	5 cut(s)	83, 230, 276, 318, 418
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	2 cut(s)	287, 818
FspBI	CTAG	1 cut(s)	752
GluI	GCNGC	2 cut(s)	287, 818
GsuI	CTGGAG	1 cut(s)	539
HaeIII	GGCC	2 cut(s)	129, 378
HapII	CCGG	2 cut(s)	150, 925
HinfI	GANTC	6 cut(s)	31, 206, 322, 367, 486, 566
HpaII	CCGG	2 cut(s)	150, 925
HphI	GGTGA	2 cut(s)	45, 224
Hpy166II	GTNNAC	1 cut(s)	611
Hpy188I	TCNGA	4 cut(s)	205, 494, 651, 705
Hpy188III	TCNNGA	6 cut(s)	110, 265, 434, 443, 563, 738
Hpy8I	GTNNAC	1 cut(s)	611
HpyAV	CCTTC	5 cut(s)	140, 236, 303, 489, 700
HpyCH4III	ACNGT	4 cut(s)	168, 477, 504, 911
HpyCH4IV	ACGT	3 cut(s)	462, 508, 613
HpyCH4V	TGCA	8 cut(s)	21, 116, 359, 470, 512, 584, 767, 871
HpyF3I	CTNAG	3 cut(s)	66, 620, 835
HpySE526I	ACGT	3 cut(s)	462, 508, 613
KpnI	GGTACC	1 cut(s)	801
Ksp22I	TGATCA	2 cut(s)	646, 673
Kzo9I	GATC	6 cut(s)	152, 343, 436, 646, 673, 748
LmnI	GCTCC	4 cut(s)	631, 639, 671, 863
Lsp1109I	GCAGC	1 cut(s)	829
LweI	GCATC	4 cut(s)	103, 211, 298, 583
MaeI	CTAG	1 cut(s)	752
MaeII	ACGT	3 cut(s)	462, 508, 613
MaeIII	GTNAC	6 cut(s)	305, 319, 364, 504, 754, 770
MalI	GATC	6 cut(s)	154, 345, 438, 648, 675, 750
MboI	GATC	6 cut(s)	152, 343, 436, 646, 673, 748
MboII	GAAGA	5 cut(s)	192, 431, 458, 551, 840
MfeI	CAATTG	1 cut(s)	171
MhlI	GDGCHC	1 cut(s)	636
MluCI	AATT	5 cut(s)	16, 171, 271, 326, 872
MlyI	GAGTC	3 cut(s)	316, 361, 575
MmeI	TCCRAC	1 cut(s)	661
MnlI	CCTC	7 cut(s)	66, 208, 423, 441, 500, 514, 876
MseI	TTAA	1 cut(s)	9
MslI	CAYNNNNRTG	4 cut(s)	111, 336, 579, 858
MspI	CCGG	2 cut(s)	150, 925
MspR9I	CCNGG	1 cut(s)	150
MunI	CAATTG	1 cut(s)	171
NciI	CCSGG	1 cut(s)	150
NcoI	CCATGG	1 cut(s)	481
NdeII	GATC	6 cut(s)	152, 343, 436, 646, 673, 748
NlaIV	GGNNCC	4 cut(s)	411, 454, 799, 865
NmeAIII	GCCGAG	1 cut(s)	550
NmuCI	GTSAC	5 cut(s)	319, 364, 504, 754, 770
NspI	RCATGY	3 cut(s)	25, 584, 847
OliI	CACNNNNGTG	1 cut(s)	858
PagI	TCATGA	2 cut(s)	109, 562
PceI	AGGCCT	1 cut(s)	129
PfeI	GAWTC	3 cut(s)	31, 206, 486
PkrI	GCNGC	2 cut(s)	288, 819
PleI	GAGTC	3 cut(s)	316, 361, 574
PmaCI	CACGTG	1 cut(s)	509
PmlI	CACGTG	1 cut(s)	509
PpsI	GAGTC	3 cut(s)	316, 361, 574
Ppu21I	YACGTR	1 cut(s)	509
PpuMI	RGGWCCY	1 cut(s)	410
Psp124BI	GAGCTC	1 cut(s)	636
Psp5II	RGGWCCY	1 cut(s)	410
PspCI	CACGTG	1 cut(s)	509
PspN4I	GGNNCC	4 cut(s)	411, 454, 799, 865
PspPI	GGNCC	3 cut(s)	377, 410, 452
PspPPI	RGGWCCY	1 cut(s)	410
RsaI	GTAC	3 cut(s)	138, 479, 799
RsaNI	GTAC	3 cut(s)	137, 478, 798
RseI	CAYNNNNRTG	4 cut(s)	111, 336, 579, 858
SacI	GAGCTC	1 cut(s)	636
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	2 cut(s)	287, 818
Sau3AI	GATC	6 cut(s)	152, 343, 436, 646, 673, 748
Sau96I	GGNCC	3 cut(s)	377, 410, 452
SchI	GAGTC	3 cut(s)	316, 361, 575
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	636
SfaNI	GCATC	4 cut(s)	103, 211, 298, 583
SinI	GGWCC	2 cut(s)	410, 452
SmiMI	CAYNNNNRTG	4 cut(s)	111, 336, 579, 858
SmlI	CTYRAG	3 cut(s)	183, 265, 297
SmoI	CTYRAG	3 cut(s)	183, 265, 297
Sse9I	AATT	5 cut(s)	16, 171, 271, 326, 872
SseBI	AGGCCT	1 cut(s)	129
SsiI	CCGC	3 cut(s)	287, 826, 894
SspMI	CTAG	1 cut(s)	752
SstI	GAGCTC	1 cut(s)	636
StuI	AGGCCT	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	481
TaaI	ACNGT	4 cut(s)	168, 477, 504, 911
TaiI	ACGT	3 cut(s)	465, 511, 616
TaqI	TCGA	2 cut(s)	547, 693
TasI	AATT	5 cut(s)	16, 171, 271, 326, 872
TatI	WGTACW	1 cut(s)	136
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	3 cut(s)	31, 206, 486
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	3 cut(s)	591, 883, 914
TseFI	GTSAC	5 cut(s)	319, 364, 504, 754, 770
TseI	GCWGC	1 cut(s)	817
Tsp45I	GTSAC	5 cut(s)	319, 364, 504, 754, 770
TspDTI	ATGAA	5 cut(s)	54, 95, 266, 271, 551
TspGWI	ACGGA	1 cut(s)	465
TspRI	CASTG	3 cut(s)	591, 883, 914
VpaK11BI	GGWCC	2 cut(s)	410, 452
XceI	RCATGY	3 cut(s)	25, 584, 847
XspI	CTAG	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.