Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011508

Physical Location & Seq

Genomic Coordinates Reverse (-)

13448494 .. 13450211

Gene Structure 1718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g18980.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCCCCTTTATACTAATTCCATGTCGTGGAATCCAAGTGAACGACAAATTTCAGAGTCTTTATCCAAGGATGTGAGCTTCAAAGTGGTATTTCCGCCACAAGGTCATCATGACGCAAAGCATTTAGGACTTCAACTACAAACAGACCAGGGATCATCATCCACAACCCAATCAATTGGTCACTCTCAAGGCGAAGATGAAACATATGGTAAGGGTGCTGATGGGAAACTGAAGCCAGTTTTCTTGCCGAGTAATCAAGATTTAATGTTGAACCCTTCTCAAGTTGGTTACAGCAATGTAGTGGGCTGCATACCATATCCTTATGTTGGCCCTTACTTCAGTGGGTTCGCGACTGCATATGGATCACAGGCTATGTCCCATATGCTTGGGATCGTACCTACACGAGTTCCGTTGCCTCCTGATCTGGCACAAGATGGACCCATCTATGTCAATGCAAAACAGTACCGTGGAATCCTCAGAAGGAGACAGTCCCGTGCAAAGTTGGAGGCTCAAAACAAACTTCTCAAATCTCGAAAGCCTTATCTCCACGAGTCTCGCCATCTTCATGCCCTGAATAGGGTAAGGGGCTCTGGTGGACGATTTCTCAGCACAAAGCGGCAATCAGACCAGAGCGCCTCCAGTAGCACCCACCACGTTTCTGACTCCATCAGCGTACATCAGAAAGATACAGGGGACACAGAAAGTCATCACTCGGAAAGCAGTGAATTCCTCCGTAGTGTTGCAATCCACTCAGACATGACAAGTGTTTCCAACACAAATGACAACTTTCGGCAGGCAGATCGCAGGTTCTCAGGCATCCCTCCCCACATGAGTGGAGCAATGGAGTTCCATGGCGGGTTTATGCGTGCTGGAAACCAGCACTCTGCTTCTGTTGTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

301

Amino Acids

33.07

Weight (kDa)

9.47

Isoelectric Point (pI)

49.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011508)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08160 FvH4_1g08160 FvH4_1g08160
malus_domestica	MD02G1086200.v1.1 MD15G1213400.v1.1
prunus_persica	Prupe.7G203500_v2.0.a1
pyrus_communis	pycom02g06940 pycom15g18980
rosa_chinensis	RchiOBHm_Chr2g0094231
rosa_laevigata	RLG00000016468
rosa_multiflora	Rmu_sc0002193.1_g000009 Rmu_sc0006198.1_g000014
rosa_roxburghii	Rroxscaffold_2G00147350
rosa_rugosa	Rorug02G0042000 Rorug02G0042100 Rorug02G0042200
rosa_samantha	Rh2AG089800 Rh2BG089900 Rh2CG092400 Rh2DG088700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	795
AccB7I	CCANNNNNTGG	1 cut(s)	27
AccII	CGCG	1 cut(s)	350
AciI	CCGC	3 cut(s)	95, 616, 855
AclWI	GGATC	3 cut(s)	160, 370, 398
AcsI	RAATTY	2 cut(s)	48, 725
AcuI	CTGAAG	2 cut(s)	251, 322
AfaI	GTAC	3 cut(s)	396, 464, 675
AfiI	CCNNNNNNNGG	5 cut(s)	27, 101, 326, 576, 577
AgsI	TTSAA	3 cut(s)	82, 134, 271
AjnI	CCWGG	1 cut(s)	147
AleI	CACNNNNGTG	1 cut(s)	831
AluBI	AGCT	1 cut(s)	78
AluI	AGCT	1 cut(s)	78
Alw26I	GTCTC	2 cut(s)	478, 558
AlwI	GGATC	3 cut(s)	160, 370, 398
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	1 cut(s)	306
ApoI	RAATTY	2 cut(s)	48, 725
AspLEI	GCGC	1 cut(s)	635
AspS9I	GGNCC	2 cut(s)	329, 437
AvaII	GGWCC	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	590
BauI	CACGAG	2 cut(s)	402, 548
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	5 cut(s)	215, 428, 449, 567, 674
BcgI	CGANNNNNNTGC	2 cut(s)	782, 816
BciT130I	CCWGG	1 cut(s)	149
BcoDI	GTCTC	2 cut(s)	478, 558
BfoI	RGCGCY	1 cut(s)	636
BfuAI	ACCTGC	1 cut(s)	795
BisI	GCNGC	2 cut(s)	307, 617
BlsI	GCNGC	2 cut(s)	308, 618
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	2 cut(s)	329, 437
BmiI	GGNNCC	1 cut(s)	439
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	825
BpmI	CTGGAG	1 cut(s)	622
BpuEI	CTTGAG	2 cut(s)	171, 264
BsaBI	GATNNNNATC	1 cut(s)	157
BsaJI	CCNNGG	4 cut(s)	66, 148, 466, 850
BsaWI	WCCGGW	1 cut(s)	897
Bsc4I	CCNNNNNNNGG	5 cut(s)	27, 101, 326, 576, 577
Bse1I	ACTGG	2 cut(s)	236, 639
Bse3DI	GCAATG	2 cut(s)	301, 846
Bse8I	GATNNNNATC	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	4 cut(s)	66, 148, 466, 850
BseGI	GGATG	3 cut(s)	76, 158, 816
BseJI	GATNNNNATC	1 cut(s)	157
BseLI	CCNNNNNNNGG	5 cut(s)	27, 101, 326, 576, 577
BseMI	GCAATG	2 cut(s)	301, 846
BseMII	CTCAG	4 cut(s)	490, 619, 765, 825
BseNI	ACTGG	2 cut(s)	236, 639
BseXI	GCAGC	1 cut(s)	293
Bsh1236I	CGCG	1 cut(s)	350
BshFI	GGCC	1 cut(s)	330
BsiSI	CCGG	1 cut(s)	898
BslFI	GGGAC	3 cut(s)	361, 475, 707
BslI	CCNNNNNNNGG	5 cut(s)	27, 101, 326, 576, 577
BsmAI	GTCTC	2 cut(s)	478, 558
BsmFI	GGGAC	3 cut(s)	361, 475, 707
BsnI	GGCC	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	590
Bsp143I	GATC	5 cut(s)	152, 362, 390, 421, 799
Bsp19I	CCATGG	1 cut(s)	850
Bsp68I	TCGCGA	1 cut(s)	350
BspACI	CCGC	3 cut(s)	95, 616, 855
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	4 cut(s)	489, 618, 764, 824
BspFNI	CGCG	1 cut(s)	350
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	439
BspMI	ACCTGC	1 cut(s)	795
BspPI	GGATC	3 cut(s)	160, 370, 398
BsrDI	GCAATG	2 cut(s)	301, 846
BsrI	ACTGG	2 cut(s)	236, 639
BssECI	CCNNGG	4 cut(s)	66, 148, 466, 850
BssMI	GATC	5 cut(s)	152, 362, 390, 421, 799
BssSI	CACGAG	2 cut(s)	402, 548
BssT1I	CCWWGG	2 cut(s)	66, 850
Bst2BI	CACGAG	2 cut(s)	402, 548
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	3 cut(s)	462, 467, 489
BstC8I	GCNNGC	2 cut(s)	795, 867
BstDEI	CTNAG	4 cut(s)	476, 605, 751, 811
BstDSI	CCRYGG	2 cut(s)	466, 850
BstF5I	GGATG	3 cut(s)	76, 158, 816
BstFNI	CGCG	1 cut(s)	350
BstH2I	RGCGCY	1 cut(s)	636
BstHHI	GCGC	1 cut(s)	635
BstKTI	GATC	5 cut(s)	155, 365, 393, 424, 802
BstMAI	GTCTC	2 cut(s)	478, 558
BstMBI	GATC	5 cut(s)	152, 362, 390, 421, 799
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	1 cut(s)	293
BstXI	CCANNNNNNTGG	3 cut(s)	176, 386, 833
BsuRI	GGCC	1 cut(s)	330
BtgI	CCRYGG	2 cut(s)	466, 850
BtsCI	GGATG	3 cut(s)	76, 158, 816
BtsI	GCAGTG	1 cut(s)	727
BtsIMutI	CAGTG	2 cut(s)	346, 727
BtuMI	TCGCGA	1 cut(s)	350
BveI	ACCTGC	1 cut(s)	795
Cac8I	GCNNGC	2 cut(s)	795, 867
CciI	TCATGA	1 cut(s)	109
CfoI	GCGC	1 cut(s)	635
Cfr13I	GGNCC	2 cut(s)	329, 437
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	3 cut(s)	395, 463, 674
CviAII	CATG	6 cut(s)	22, 110, 566, 757, 829, 851
CviJI	RGCY	8 cut(s)	78, 235, 306, 330, 371, 509, 538, 588
CviKI_1	RGCY	8 cut(s)	78, 235, 306, 330, 371, 509, 538, 588
CviQI	GTAC	3 cut(s)	395, 463, 674
DdeI	CTNAG	4 cut(s)	476, 605, 751, 811
DpnI	GATC	5 cut(s)	154, 364, 392, 423, 801
DpnII	GATC	5 cut(s)	152, 362, 390, 421, 799
EciI	GGCGGA	1 cut(s)	84
Eco130I	CCWWGG	2 cut(s)	66, 850
Eco24I	GRGCYC	1 cut(s)	590
Eco47I	GGWCC	1 cut(s)	437
Eco57I	CTGAAG	2 cut(s)	251, 322
EcoRI	GAATTC	1 cut(s)	725
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	66, 850
EcoT38I	GRGCYC	1 cut(s)	590
ErhI	CCWWGG	2 cut(s)	66, 850
FaeI	CATG	6 cut(s)	25, 113, 569, 760, 832, 854
FaqI	GGGAC	3 cut(s)	361, 475, 707
FatI	CATG	6 cut(s)	21, 109, 565, 756, 828, 850
FauI	CCCGC	1 cut(s)	848
FauNDI	CATATG	3 cut(s)	205, 358, 381
Fnu4HI	GCNGC	2 cut(s)	307, 617
FokI	GGATG	3 cut(s)	83, 145, 803
FriOI	GRGCYC	1 cut(s)	590
Fsp4HI	GCNGC	2 cut(s)	307, 617
GlaI	GCGC	1 cut(s)	634
GluI	GCNGC	2 cut(s)	307, 617
GsuI	CTGGAG	1 cut(s)	622
HaeII	RGCGCY	1 cut(s)	636
HaeIII	GGCC	1 cut(s)	330
HapII	CCGG	1 cut(s)	898
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	1 cut(s)	635
Hin1II	CATG	6 cut(s)	25, 113, 569, 760, 832, 854
Hin6I	GCGC	1 cut(s)	633
HinP1I	GCGC	1 cut(s)	633
HinfI	GANTC	5 cut(s)	31, 56, 471, 551, 662
HpaII	CCGG	1 cut(s)	898
Hpy166II	GTNNAC	2 cut(s)	41, 596
Hpy188I	TCNGA	7 cut(s)	55, 479, 625, 661, 681, 715, 754
Hpy188III	TCNNGA	5 cut(s)	110, 257, 349, 419, 531
Hpy8I	GTNNAC	2 cut(s)	41, 596
HpyAV	CCTTC	2 cut(s)	285, 474
HpyCH4III	ACNGT	3 cut(s)	462, 467, 489
HpyCH4IV	ACGT	1 cut(s)	654
HpyCH4V	TGCA	5 cut(s)	309, 356, 455, 497, 743
HpyF3I	CTNAG	4 cut(s)	476, 605, 751, 811
HpySE526I	ACGT	1 cut(s)	654
Hsp92II	CATG	6 cut(s)	25, 113, 569, 760, 832, 854
HspAI	GCGC	1 cut(s)	633
Kzo9I	GATC	5 cut(s)	152, 362, 390, 421, 799
LmnI	GCTCC	1 cut(s)	836
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	1 cut(s)	825
MaeII	ACGT	1 cut(s)	654
MaeIII	GTNAC	2 cut(s)	179, 287
MalI	GATC	5 cut(s)	154, 364, 392, 423, 801
MboI	GATC	5 cut(s)	152, 362, 390, 421, 799
MboII	GAAGA	2 cut(s)	206, 554
MfeI	CAATTG	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	590
MluCI	AATT	4 cut(s)	16, 48, 174, 725
MlyI	GAGTC	3 cut(s)	65, 560, 656
MmeI	TCCRAC	2 cut(s)	483, 795
MnlI	CCTC	6 cut(s)	426, 485, 499, 646, 740, 831
MseI	TTAA	1 cut(s)	263
MslI	CAYNNNNRTG	2 cut(s)	564, 831
MspI	CCGG	1 cut(s)	898
MspR9I	CCNGG	1 cut(s)	149
MunI	CAATTG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	350
NcoI	CCATGG	1 cut(s)	850
NdeI	CATATG	3 cut(s)	205, 358, 381
NdeII	GATC	5 cut(s)	152, 362, 390, 421, 799
NlaIII	CATG	6 cut(s)	25, 113, 569, 760, 832, 854
NlaIV	GGNNCC	1 cut(s)	439
NmeAIII	GCCGAG	1 cut(s)	273
NmuCI	GTSAC	1 cut(s)	179
NruI	TCGCGA	1 cut(s)	350
OliI	CACNNNNGTG	1 cut(s)	831
PagI	TCATGA	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	31, 471
PflMI	CCANNNNNTGG	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	308, 618
PleI	GAGTC	3 cut(s)	64, 559, 656
PpsI	GAGTC	3 cut(s)	64, 559, 656
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	439
PspPI	GGNCC	2 cut(s)	329, 437
RruI	TCGCGA	1 cut(s)	350
RsaI	GTAC	3 cut(s)	396, 464, 675
RsaNI	GTAC	3 cut(s)	395, 463, 674
RseI	CAYNNNNRTG	2 cut(s)	564, 831
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	2 cut(s)	307, 617
Sau3AI	GATC	5 cut(s)	152, 362, 390, 421, 799
Sau96I	GGNCC	2 cut(s)	329, 437
SchI	GAGTC	3 cut(s)	65, 560, 656
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	590
SetI	ASST	5 cut(s)	80, 106, 400, 657, 809
SfaNI	GCATC	1 cut(s)	825
SinI	GGWCC	1 cut(s)	437
SmiMI	CAYNNNNRTG	2 cut(s)	564, 831
SmlI	CTYRAG	2 cut(s)	186, 279
SmoI	CTYRAG	2 cut(s)	186, 279
Sse9I	AATT	4 cut(s)	16, 48, 174, 725
SsiI	CCGC	3 cut(s)	95, 616, 855
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	2 cut(s)	66, 850
TaaI	ACNGT	3 cut(s)	462, 467, 489
TaiI	ACGT	1 cut(s)	657
TaqI	TCGA	1 cut(s)	532
TasI	AATT	4 cut(s)	16, 48, 174, 725
TauI	GCSGC	1 cut(s)	619
TfiI	GAWTC	2 cut(s)	31, 471
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	2 cut(s)	346, 727
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	1 cut(s)	306
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	213, 554
TspGWI	ACGGA	2 cut(s)	399, 722
TspRI	CASTG	2 cut(s)	346, 727
Van91I	CCANNNNNTGG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	2 cut(s)	48, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.