Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0011508

Physical Location & Seq

Genomic Coordinates Forward (+)

18875767 .. 18879196

Gene Structure 3430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G203500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCGAATGTGATTGAATGGTTGCATACTCGCCGATTACATGATTCATTGATAGAATTATCTATGCCAACTCAAAACTTGGACAAGAAATTTTTCAGTCAAAGTTCTGTCCAGTCAATGCCTCTCTATACTACTAATTGCATGTCGTGGAATCCAATTGAACGAGAAATTCCACAATCTTCGTCCAAGGATGCAAGCTTTAAAGTGGAATTTACGCCACAAGTTCATCACGATGCAAAGCATTTAGGACTTCAACTGCTACCGGACCAGGGATCATCATCCACAACACAAACAATTAGCCAATCTCAAGATCGATGCAATTCATCAGAATCTGGTGAAGATGAAATATGTGGCAAGGGTGTTGAAGGCCAAATGAAGCCAGTTTACTTGCTGAATAATCTAGACCTCATGTCAAATCCTTCTCAAGTTGGTTACGGAAATTTAATGGGTCGTGTACCGTATCCTTATGCCGATCCTTACTTCAGTGGGTTCTTGGCTGCATATGGACCACAGGCTATGCCCCAGATGATGGCACCTACGCGAGTTCCATTGCCTCTTGATCTGGCAGAAGATGGACCCATCTATGTCAATGCGAAACAGTACCATGGCATCCTCAGAAGGAGACAATCTCGTGCAAAACTGGAGGCTCAAAACAAACTTCTCAAAGCTCGAAAGCCATATCTCCATGAGTCTCGTCATCTTCATGCCCTGAACAGGGTAAGGGGCTCTGGTGGACGTTTTCTCAGCACAAAGAGGCTCCAACAATCTGATCAGAACCCCTCCAGTAGCACCCATGATGTTCCGGACTCCATCAACTTACATCAGAAAGATACACAGGACACAGAAAGTCATCACTTGGGAAGCAGTGAATTCGTCACTGCTGTCGCAACCCACTCAGACATAGCAAGTGTTTCCCATACCAATGACATCTTTCGGCAGCAGGATCGCAGGTTCTCAGGCATCCCTTCCCACATGGGTGGAGCCATGCAATTCCGCGGGGGGCTTATGCGTGCTGGAACCCAGCATTGTGCTTCAGTTGTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

349

Amino Acids

38.88

Weight (kDa)

8.6

Isoelectric Point (pI)

58.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011508)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08160 FvH4_1g08160 FvH4_1g08160
malus_domestica	MD02G1086200.v1.1 MD15G1213400.v1.1
prunus_persica	Prupe.7G203500_v2.0.a1
pyrus_communis	pycom02g06940 pycom15g18980
rosa_chinensis	RchiOBHm_Chr2g0094231
rosa_laevigata	RLG00000016468
rosa_multiflora	Rmu_sc0002193.1_g000009 Rmu_sc0006198.1_g000014
rosa_roxburghii	Rroxscaffold_2G00147350
rosa_rugosa	Rorug02G0042000 Rorug02G0042100 Rorug02G0042200
rosa_samantha	Rh2AG089800 Rh2BG089900 Rh2CG092400 Rh2DG088700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	939
AccB1I	GGYRCC	1 cut(s)	532
AccB7I	CCANNNNNTGG	1 cut(s)	529
AccII	CGCG	2 cut(s)	541, 996
AccIII	TCCGGA	1 cut(s)	802
AciI	CCGC	2 cut(s)	994, 996
AclWI	GGATC	3 cut(s)	280, 467, 951
AcsI	RAATTY	5 cut(s)	89, 168, 209, 439, 869
AcuI	CTGAAG	2 cut(s)	466, 1017
AfaI	GTAC	2 cut(s)	456, 602
AfiI	CCNNNNNNNGG	4 cut(s)	269, 529, 714, 715
AgsI	TTSAA	4 cut(s)	17, 161, 254, 365
AhdI	GACNNNNNGTC	1 cut(s)	409
AjnI	CCWGG	1 cut(s)	267
AleI	CACNNNNGTG	1 cut(s)	975
AloI	GAACNNNNNNTCC	2 cut(s)	935, 967
AluBI	AGCT	2 cut(s)	198, 668
AluI	AGCT	2 cut(s)	198, 668
Alw26I	GTCTC	2 cut(s)	616, 696
AlwI	GGATC	3 cut(s)	280, 467, 951
AlwNI	CAGNNNCTG	1 cut(s)	332
Aor13HI	TCCGGA	1 cut(s)	802
AoxI	GGCC	1 cut(s)	367
ApeKI	GCWGC	2 cut(s)	497, 937
ApoI	RAATTY	5 cut(s)	89, 168, 209, 439, 869
Asp700I	GAANNNNTTC	1 cut(s)	92
AspS9I	GGNCC	3 cut(s)	265, 506, 575
AsuHPI	GGTGA	1 cut(s)	347
AvaII	GGWCC	3 cut(s)	265, 506, 575
BanI	GGYRCC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	728
BarI	GAAGNNNNNNTAC	2 cut(s)	368, 400
BauI	CACGAG	1 cut(s)	630
BbvI	GCAGC	2 cut(s)	484, 949
BccI	CCATC	4 cut(s)	523, 566, 587, 818
BcgI	CGANNNNNNTGC	4 cut(s)	853, 887, 926, 960
BciT130I	CCWGG	1 cut(s)	269
BciVI	GTATCC	1 cut(s)	471
BclI	TGATCA	1 cut(s)	769
BcoDI	GTCTC	2 cut(s)	616, 696
BfaI	CTAG	1 cut(s)	401
BfuAI	ACCTGC	1 cut(s)	939
BfuI	GTATCC	1 cut(s)	471
BisI	GCNGC	2 cut(s)	498, 938
BlsI	GCNGC	2 cut(s)	499, 939
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	3 cut(s)	265, 506, 575
BmeRI	GACNNNNNGTC	1 cut(s)	409
BmgT120I	GGNCC	3 cut(s)	265, 506, 575
BmiI	GGNNCC	5 cut(s)	534, 577, 758, 982, 1018
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	5 cut(s)	181, 223, 305, 618, 969
BplI	GAGNNNNNCTC	2 cut(s)	613, 645
BpmI	CTGGAG	2 cut(s)	662, 766
BpuEI	CTTGAG	2 cut(s)	291, 408
Bsa29I	ATCGAT	1 cut(s)	313
BsaBI	GATNNNNATC	1 cut(s)	277
BsaJI	CCNNGG	4 cut(s)	186, 268, 604, 994
BsaWI	WCCGGW	3 cut(s)	262, 802, 1041
Bsc4I	CCNNNNNNNGG	4 cut(s)	269, 529, 714, 715
Bse1I	ACTGG	4 cut(s)	112, 380, 645, 783
Bse3DI	GCAATG	1 cut(s)	548
Bse8I	GATNNNNATC	1 cut(s)	277
BseAI	TCCGGA	1 cut(s)	802
BseBI	CCWGG	1 cut(s)	269
BseCI	ATCGAT	1 cut(s)	313
BseDI	CCNNGG	4 cut(s)	186, 268, 604, 994
BseGI	GGATG	4 cut(s)	196, 278, 609, 960
BseJI	GATNNNNATC	1 cut(s)	277
BseLI	CCNNNNNNNGG	4 cut(s)	269, 529, 714, 715
BseMI	GCAATG	1 cut(s)	548
BseMII	CTCAG	4 cut(s)	628, 757, 909, 969
BseNI	ACTGG	4 cut(s)	112, 380, 645, 783
BseXI	GCAGC	2 cut(s)	484, 949
BseYI	CCCAGC	1 cut(s)	1020
Bsh1236I	CGCG	2 cut(s)	541, 996
BshFI	GGCC	1 cut(s)	369
BshNI	GGYRCC	1 cut(s)	532
BshVI	ATCGAT	1 cut(s)	313
BsiSI	CCGG	3 cut(s)	263, 803, 1042
BslI	CCNNNNNNNGG	4 cut(s)	269, 529, 714, 715
BsmAI	GTCTC	2 cut(s)	616, 696
BsnI	GGCC	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	728
Bsp13I	TCCGGA	1 cut(s)	802
Bsp143I	GATC	6 cut(s)	272, 310, 472, 559, 769, 943
Bsp19I	CCATGG	1 cut(s)	604
BspACI	CCGC	2 cut(s)	994, 996
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	4 cut(s)	627, 756, 908, 968
BspDI	ATCGAT	1 cut(s)	313
BspEI	TCCGGA	1 cut(s)	802
BspFNI	CGCG	2 cut(s)	541, 996
BspLI	GGNNCC	5 cut(s)	534, 577, 758, 982, 1018
BspMI	ACCTGC	1 cut(s)	939
BspPI	GGATC	3 cut(s)	280, 467, 951
BspT107I	GGYRCC	1 cut(s)	532
BsrDI	GCAATG	1 cut(s)	548
BsrI	ACTGG	4 cut(s)	112, 380, 645, 783
BssECI	CCNNGG	4 cut(s)	186, 268, 604, 994
BssMI	GATC	6 cut(s)	272, 310, 472, 559, 769, 943
BssSI	CACGAG	1 cut(s)	630
BssT1I	CCWWGG	2 cut(s)	186, 604
Bst2BI	CACGAG	1 cut(s)	630
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	2 cut(s)	459, 600
BstC8I	GCNNGC	2 cut(s)	196, 1011
BstDEI	CTNAG	4 cut(s)	614, 743, 895, 955
BstDSI	CCRYGG	2 cut(s)	604, 994
BstF5I	GGATG	4 cut(s)	196, 278, 609, 960
BstFNI	CGCG	2 cut(s)	541, 996
BstKTI	GATC	6 cut(s)	275, 313, 475, 562, 772, 946
BstMAI	GTCTC	2 cut(s)	616, 696
BstMBI	GATC	6 cut(s)	272, 310, 472, 559, 769, 943
BstNI	CCWGG	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	267
BstUI	CGCG	2 cut(s)	541, 996
BstV1I	GCAGC	2 cut(s)	484, 949
BstXI	CCANNNNNNTGG	1 cut(s)	977
Bsu15I	ATCGAT	1 cut(s)	313
BsuI	GTATCC	1 cut(s)	471
BsuRI	GGCC	1 cut(s)	369
BsuTUI	ATCGAT	1 cut(s)	313
BtgI	CCRYGG	2 cut(s)	604, 994
BtsCI	GGATG	4 cut(s)	196, 278, 609, 960
BtsI	GCAGTG	2 cut(s)	871, 876
BtsIMutI	CAGTG	3 cut(s)	490, 871, 876
BveI	ACCTGC	1 cut(s)	939
Cac8I	GCNNGC	2 cut(s)	196, 1011
CaiI	CAGNNNCTG	1 cut(s)	332
Cfr13I	GGNCC	3 cut(s)	265, 506, 575
Cfr42I	CCGCGG	1 cut(s)	997
ClaI	ATCGAT	1 cut(s)	313
Csp6I	GTAC	2 cut(s)	455, 601
CviAII	CATG	9 cut(s)	41, 142, 409, 605, 686, 704, 794, 973, 985
CviQI	GTAC	2 cut(s)	455, 601
DdeI	CTNAG	4 cut(s)	614, 743, 895, 955
DpnI	GATC	6 cut(s)	274, 312, 474, 561, 771, 945
DpnII	GATC	6 cut(s)	272, 310, 472, 559, 769, 943
DraI	TTTAAA	1 cut(s)	202
DriI	GACNNNNNGTC	1 cut(s)	409
Eam1105I	GACNNNNNGTC	1 cut(s)	409
Eco130I	CCWWGG	2 cut(s)	186, 604
Eco24I	GRGCYC	1 cut(s)	728
Eco47I	GGWCC	3 cut(s)	265, 506, 575
Eco57I	CTGAAG	2 cut(s)	466, 1017
EcoRI	GAATTC	1 cut(s)	869
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	2 cut(s)	186, 604
EcoT38I	GRGCYC	1 cut(s)	728
ErhI	CCWWGG	2 cut(s)	186, 604
FaeI	CATG	9 cut(s)	44, 145, 412, 608, 689, 707, 797, 976, 988
FatI	CATG	9 cut(s)	40, 141, 408, 604, 685, 703, 793, 972, 984
FauI	CCCGC	1 cut(s)	989
FauNDI	CATATG	1 cut(s)	502
FbaI	TGATCA	1 cut(s)	769
Fnu4HI	GCNGC	2 cut(s)	498, 938
FokI	GGATG	4 cut(s)	203, 265, 596, 947
FriOI	GRGCYC	1 cut(s)	728
Fsp4HI	GCNGC	2 cut(s)	498, 938
FspBI	CTAG	1 cut(s)	401
GluI	GCNGC	2 cut(s)	498, 938
GsaI	CCCAGC	1 cut(s)	1024
GsuI	CTGGAG	2 cut(s)	662, 766
HaeIII	GGCC	1 cut(s)	369
HapII	CCGG	3 cut(s)	263, 803, 1042
Hin1II	CATG	9 cut(s)	44, 145, 412, 608, 689, 707, 797, 976, 988
HindIII	AAGCTT	1 cut(s)	196
HinfI	GANTC	5 cut(s)	44, 151, 329, 689, 806
HpaII	CCGG	3 cut(s)	263, 803, 1042
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	3 cut(s)	385, 455, 734
Hpy188I	TCNGA	6 cut(s)	328, 617, 769, 774, 825, 898
Hpy188III	TCNNGA	5 cut(s)	230, 308, 401, 557, 803
Hpy8I	GTNNAC	3 cut(s)	385, 455, 734
HpyAV	CCTTC	4 cut(s)	359, 429, 612, 975
HpyCH4III	ACNGT	2 cut(s)	459, 600
HpyCH4IV	ACGT	1 cut(s)	736
HpyCH4V	TGCA	8 cut(s)	25, 141, 194, 236, 318, 500, 635, 988
HpyF3I	CTNAG	4 cut(s)	614, 743, 895, 955
HpySE526I	ACGT	1 cut(s)	736
Hsp92II	CATG	9 cut(s)	44, 145, 412, 608, 689, 707, 797, 976, 988
Kpn2I	TCCGGA	1 cut(s)	802
Ksp22I	TGATCA	1 cut(s)	769
KspI	CCGCGG	1 cut(s)	997
Kzo9I	GATC	6 cut(s)	272, 310, 472, 559, 769, 943
LmnI	GCTCC	2 cut(s)	762, 980
Lsp1109I	GCAGC	2 cut(s)	484, 949
LweI	GCATC	5 cut(s)	181, 223, 305, 618, 969
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	1 cut(s)	736
MaeIII	GTNAC	2 cut(s)	431, 874
MalI	GATC	6 cut(s)	274, 312, 474, 561, 771, 945
MboI	GATC	6 cut(s)	272, 310, 472, 559, 769, 943
MboII	GAAGA	4 cut(s)	171, 350, 581, 692
MfeI	CAATTG	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	728
MlyI	GAGTC	2 cut(s)	698, 800
MmeI	TCCRAC	1 cut(s)	784
MnlI	CCTC	7 cut(s)	132, 416, 564, 623, 637, 747, 790
MroI	TCCGGA	1 cut(s)	802
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	2 cut(s)	201, 443
MslI	CAYNNNNRTG	4 cut(s)	231, 702, 921, 975
MspA1I	CMGCKG	1 cut(s)	996
MspI	CCGG	3 cut(s)	263, 803, 1042
MspR9I	CCNGG	1 cut(s)	269
MunI	CAATTG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	2 cut(s)	541, 996
NcoI	CCATGG	1 cut(s)	604
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	6 cut(s)	272, 310, 472, 559, 769, 943
NlaIII	CATG	9 cut(s)	44, 145, 412, 608, 689, 707, 797, 976, 988
NlaIV	GGNNCC	5 cut(s)	534, 577, 758, 982, 1018
NmuCI	GTSAC	1 cut(s)	874
NspI	RCATGY	1 cut(s)	145
OliI	CACNNNNGTG	1 cut(s)	975
PdmI	GAANNNNTTC	1 cut(s)	92
PfeI	GAWTC	3 cut(s)	44, 151, 329
PflMI	CCANNNNNTGG	1 cut(s)	529
PkrI	GCNGC	2 cut(s)	499, 939
PleI	GAGTC	2 cut(s)	697, 800
PpsI	GAGTC	2 cut(s)	697, 800
Psp6I	CCWGG	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	1020
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	5 cut(s)	534, 577, 758, 982, 1018
PspPI	GGNCC	3 cut(s)	265, 506, 575
PstNI	CAGNNNCTG	1 cut(s)	332
RsaI	GTAC	2 cut(s)	456, 602
RsaNI	GTAC	2 cut(s)	455, 601
RseI	CAYNNNNRTG	4 cut(s)	231, 702, 921, 975
SacII	CCGCGG	1 cut(s)	997
SaqAI	TTAA	2 cut(s)	201, 443
SatI	GCNGC	2 cut(s)	498, 938
Sau3AI	GATC	6 cut(s)	272, 310, 472, 559, 769, 943
Sau96I	GGNCC	3 cut(s)	265, 506, 575
SchI	GAGTC	2 cut(s)	698, 800
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	728
SetI	ASST	6 cut(s)	200, 408, 538, 670, 739, 953
SfaNI	GCATC	5 cut(s)	181, 223, 305, 618, 969
Sfr303I	CCGCGG	1 cut(s)	997
SgrBI	CCGCGG	1 cut(s)	997
SinI	GGWCC	3 cut(s)	265, 506, 575
SmiMI	CAYNNNNRTG	4 cut(s)	231, 702, 921, 975
SmlI	CTYRAG	2 cut(s)	306, 423
SmoI	CTYRAG	2 cut(s)	306, 423
SsiI	CCGC	2 cut(s)	994, 996
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	2 cut(s)	186, 604
TaaI	ACNGT	2 cut(s)	459, 600
TaiI	ACGT	1 cut(s)	739
TaqI	TCGA	2 cut(s)	313, 670
TfiI	GAWTC	3 cut(s)	44, 151, 329
Tru1I	TTAA	2 cut(s)	201, 443
Tru9I	TTAA	2 cut(s)	201, 443
TscAI	CASTG	3 cut(s)	490, 871, 883
TseFI	GTSAC	1 cut(s)	874
TseI	GCWGC	2 cut(s)	497, 937
Tsp45I	GTSAC	1 cut(s)	874
TspDTI	ATGAA	6 cut(s)	36, 215, 312, 357, 389, 692
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	3 cut(s)	490, 871, 883
Van91I	CCANNNNNTGG	1 cut(s)	529
VpaK11BI	GGWCC	3 cut(s)	265, 506, 575
XapI	RAATTY	5 cut(s)	89, 168, 209, 439, 869
XbaI	TCTAGA	1 cut(s)	400
XceI	RCATGY	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.