Rorug02G0042100

Nuclear transcription factor Y subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011508
Physical Location & Seq
Reverse (-)
3262945 .. 3265250
2306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0042100.1

Sequence Viewer

Length: 2151 bp
ATGGCTGCTCCGCTTTCCCTCCACCACATTAGACCACATTTCCTTCCCGACAATCCCCTCTTAAATAAACCCACCGCCATAACGGTCGCAACTACCACGGCCGCGGCGGCTACCAAAACTAACCAAGCTCAACAACACCCATGTCTTACGTTACTAGACAACTGCTCCAGCATGTCTGAGCTCAAGCAAATCCACGCCCAGCTCCTCCGGAATGGTCTCTTCTTCGACGCATTCACCGTCAGCAAGATCGTCGCCTTTTCGGCTTTAGAAGACTCCGGGAACCTCACTTATTCCCGTTCAGTCCTCACCCAAATCCCCAATCCCAATGGTTTCACTTGTAATTCTGTTATCCGAGGCTATACGAACAAGGGTTTGGCCCGGGAGGCCATTTCTTTCTACCGAGAAATGATTGCACGGGGTTGGATACCTGACCGGTTCACATTCCCTTCGTTGTTCAAGTCATGTAAGGATTTGGGTGTAGGGAAACAGCTGCATTGTCAATCTACCAAGCTAGGCTTCGCTTCGGATTCGTACATTCAGAACACTCTGATTAACATGTACTCGACTTGCGGGTGTTTGGTCTCTGCAAGGAAGGTGTTTGATAAAATGAGTGACAAGAGTGTGGTGTCTTGGGCGACCATGATCGACGCTTATGCGCGGTGGGATCAATCCGCTGAAGCTTTGAAGCTGTTTGATAAGATGGAGAGGGTAAATGTGGATCCTAATGAGGTTACTTTGCTTAATGTTTTGACTGCTTGTGGGATGGCGAGGGATTTGGGAACTGCGAAAAGGGTGCACCGGTGCATTGAGGAGTACGGTTTTGGGTCGCATTTGAAGCTCAGTACGGCTCTGATGGATGTTTATTGCAAATGTGGATGTGTATCGCTTGCGCGAGAATTGTTCGACAGAATGCCTGAGAAGAACTTGTTCTGTTGGAACATCATGATCAATGGACATGTAGAGGAAAGTGATTATGATGAGGCGTTCCTACTCTTTCGTAGAATGCAACTTGAGGGAGAAAAGGGGGATGAGGTGACTATGGTGAGTTTATTGCTTGCTTGCAGCAATTTGGGAGCTCTAGAGCTTGGAAAGTGGCTGCACGCCTATATTGAAAAGCAGAAAATTGAGGTGGACGTTGCCCTCGGGACGGCTCTTGTTGACATGTACGCCAAGTGTGGGAGCATAGACATTGCATCAGATGTTTTCCGGACACTGCCTGCGAAGGATTTGATGACTTGGGCAGCCTTGATTTCTGGTTTTGCAATGTGTGGCCAGGGGAAGAAGGCTTTGGAGCATTTCCATGAGATGCAGATGAGTGGAGTGAAACCAGATGCAATAACCTTTGTTGGGGTATTGGCTGCTTGTAGCCATGCTGGGTTAGTGGATGAAGGACTTTCACATTTTAACTCAATGTCTGAAGTGTATGGGATTCAGCCTAGCATTGAACACTATGGCTGTATGGTTGATGTGTTAGGCAGAGCTGGTCGCATAGCTGAAGCAGAGGAGTTGATTCAAAAGATGCAAATGAAACCGGATCGTTTCGTTTTGGGAGGGCTTCTTGGTGCCTGCAGAATCCATGGCAACCTTGAGGCTGCAGAAAGAGCAGCTAAACAGCTCCTAGAACTTAATCCGGATGATGAAGGAACATATGTGCTTCTATCAAACTTATACAGCTCTATGGAAAAATGGGAAGAAGCAATAAGAATTAGGAAACTCATGGCAGAAAGGAGTATAAAGAAACCTCCTGGATGTAGTCTGATTGAGGTCGATGGAATTGTCCATGAATTTGTGAAGGGTGATTCATCTCATCCACAATCCACAAACATCTATGAAATGCTGGAAGACATGATCAGTCGATTGAAGAAAGCCGGTTATGTCCCTCAGAAATCAGAGGTGTTGTTTGATATGGATGAAGAAGAGAAGGAGACTGCACTTAGCCTCCACAGTGAAAAACTAGCAATTGCATTTGGGCTCATAAGTACAAATCCTGGGACGCCGATTCGAGTAGTGAAAAACCTTCGTGTATGCAGTGATTGCCACACTGCAACCAAGCTCATATCCAAAGTATACAACAGGGAGATAATAGTTCGGGACAGGAATCGTTTCCATCAATTTAAGGATGGATCTTGTTCTTGTAAGGATTTCTGGTGA

Protein Analysis

716

Amino Acids

79.76

Weight (kDa)

6.33

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 108 - 155 1.1e-09 PPR repeat family
PPR PF01535 111 - 140 8.5e-06 PPR repeat
PPR_2 PF13041 207 - 253 4e-09 PPR repeat family
PPR PF01535 209 - 237 7.3e-06 PPR repeat
PPR_2 PF13041 308 - 355 5.1e-08 PPR repeat family
PPR PF01535 311 - 339 1e-05 PPR repeat
PPR_2 PF13041 409 - 456 7.1e-09 PPR repeat family
E_motif PF20431 526 - 588 1.5e-20 E motif
Eplus_motif PF20430 593 - 620 5.5e-07 E+ motif
DYW_deaminase PF14432 624 - 716 1.3e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1562
AccI GTMKAC 1 cut(s) 2067
AccII CGCG 3 cut(s) 104, 658, 892
AccIII TCCGGA 3 cut(s) 207, 1206, 1630
AciI CCGC 8 cut(s) 11, 75, 102, 104, 107, 570, 658, 672
AclWI GGATC 5 cut(s) 672, 713, 726, 1542, 2131
AcoI YGGCCR 2 cut(s) 99, 1270
AcsI RAATTY 1 cut(s) 1784
AcuI CTGAAG 3 cut(s) 696, 1437, 1515
AcyI GRCGYC 1 cut(s) 1994
AfaI GTAC 6 cut(s) 533, 560, 815, 844, 1166, 1981
AfiI CCNNNNNNNGG 3 cut(s) 1147, 1176, 1347
AflIII ACRYGT 3 cut(s) 555, 955, 1161
AgeI ACCGGT 2 cut(s) 432, 798
AgsI TTSAA 7 cut(s) 457, 685, 835, 1112, 1445, 1514, 1861
AjnI CCWGG 3 cut(s) 1272, 1744, 1987
AjuI GAANNNNNNNTTGG 6 cut(s) 356, 388, 500, 532, 1271, 1303
Alw21I GWGCWC 3 cut(s) 183, 798, 1078
Alw26I GTCTC 3 cut(s) 221, 586, 1919
Alw44I GTGCAC 1 cut(s) 794
AlwI GGATC 5 cut(s) 672, 713, 726, 1542, 2131
Ama87I CYCGRG 2 cut(s) 378, 1142
Aor13HI TCCGGA 3 cut(s) 207, 1206, 1630
AoxI GGCC 4 cut(s) 99, 375, 384, 1270
ApaLI GTGCAC 1 cut(s) 794
ApeKI GCWGC 8 cut(s) 5, 490, 1062, 1096, 1241, 1358, 1592, 1604
ApoI RAATTY 1 cut(s) 1784
AsiGI ACCGGT 2 cut(s) 432, 798
Asp700I GAANNNNTTC 2 cut(s) 926, 2102
AspLEI GCGC 2 cut(s) 658, 892
AspS9I GGNCC 1 cut(s) 376
AsuC2I CCSGG 3 cut(s) 277, 379, 380
AsuHPI GGTGA 5 cut(s) 226, 298, 1045, 1054, 1808
AvaI CYCGRG 2 cut(s) 378, 1142
BaeGI GKGCMC 1 cut(s) 798
BalI TGGCCA 1 cut(s) 1272
BamHI GGATCC 1 cut(s) 718
BanI GGYRCC 1 cut(s) 1562
BanII GRGCYC 3 cut(s) 183, 1078, 1974
BbsI GAAGAC 2 cut(s) 276, 1848
Bbv12I GWGCWC 3 cut(s) 183, 798, 1078
BbvI GCAGC 7 cut(s) 477, 1074, 1083, 1253, 1345, 1579, 1616
BccI CCATC 6 cut(s) 694, 757, 847, 1763, 2114, 2115
BceAI ACGGC 3 cut(s) 114, 861, 1164
BcgI CGANNNNNNTGC 6 cut(s) 232, 266, 635, 669, 775, 809
BciT130I CCWGG 3 cut(s) 1274, 1746, 1989
BciVI GTATCC 1 cut(s) 417
BclI TGATCA 2 cut(s) 945, 1848
BcnI CCSGG 3 cut(s) 277, 379, 380
BcoDI GTCTC 3 cut(s) 221, 586, 1919
BfaI CTAG 6 cut(s) 155, 512, 1079, 1437, 1619, 1955
BfmI CTRYAG 2 cut(s) 1567, 1593
BfuI GTATCC 1 cut(s) 417
BglI GCCNNNNNGGC 3 cut(s) 107, 260, 383
Bme1390I CCNGG 6 cut(s) 277, 379, 380, 1274, 1746, 1989
BmeT110I CYCGRG 2 cut(s) 378, 1142
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 3 cut(s) 281, 720, 1564
BmrFI CCNGG 6 cut(s) 277, 379, 380, 1274, 1746, 1989
BmsI GCATC 4 cut(s) 1202, 1296, 1321, 1509
BpiI GAAGAC 2 cut(s) 276, 1848
BpmI CTGGAG 1 cut(s) 151
BpuEI CTTGAG 3 cut(s) 167, 1031, 1607
BpuMI CCSGG 3 cut(s) 277, 379, 380
BsaBI GATNNNNATC 1 cut(s) 880
BsaHI GRCGYC 1 cut(s) 1994
BsaI GGTCTC 2 cut(s) 221, 586
BsaJI CCNNGG 8 cut(s) 96, 102, 352, 378, 1141, 1273, 1576, 1988
BsaWI WCCGGW 6 cut(s) 207, 432, 798, 1206, 1531, 1630
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 1923, 1953
Bsc4I CCNNNNNNNGG 3 cut(s) 1147, 1176, 1347
Bse118I RCCGGY 3 cut(s) 432, 798, 1868
Bse3DI GCAATG 2 cut(s) 1188, 1269
Bse8I GATNNNNATC 1 cut(s) 880
BseAI TCCGGA 3 cut(s) 207, 1206, 1630
BseBI CCWGG 3 cut(s) 1274, 1746, 1989
BseDI CCNNGG 8 cut(s) 96, 102, 352, 378, 1141, 1273, 1576, 1988
BseJI GATNNNNATC 1 cut(s) 880
BseLI CCNNNNNNNGG 3 cut(s) 1147, 1176, 1347
BseMI GCAATG 2 cut(s) 1188, 1269
BseMII CTCAG 4 cut(s) 168, 853, 906, 1895
BseRI GAGGAG 3 cut(s) 194, 824, 1517
BseSI GKGCMC 1 cut(s) 798
BseX3I CGGCCG 1 cut(s) 99
BseXI GCAGC 7 cut(s) 477, 1074, 1083, 1253, 1345, 1579, 1616
BseYI CCCAGC 2 cut(s) 198, 1373
BsgI GTGCAG 2 cut(s) 1082, 1914
Bsh1236I CGCG 3 cut(s) 104, 658, 892
Bsh1285I CGRYCG 2 cut(s) 87, 102
BshFI GGCC 4 cut(s) 101, 377, 386, 1272
BshNI GGYRCC 1 cut(s) 1562
BshTI ACCGGT 2 cut(s) 432, 798
BsiEI CGRYCG 2 cut(s) 87, 102
BsiHKAI GWGCWC 3 cut(s) 183, 798, 1078
BsiHKCI CYCGRG 2 cut(s) 378, 1142
BsiSI CCGG 9 cut(s) 208, 276, 379, 433, 799, 1207, 1532, 1631, 1869
BslFI GGGAC 4 cut(s) 1159, 1862, 2005, 2105
BslI CCNNNNNNNGG 3 cut(s) 1147, 1176, 1347
BsmAI GTCTC 3 cut(s) 221, 586, 1919
BsmFI GGGAC 4 cut(s) 1159, 1862, 2005, 2105
BsmI GAATGC 3 cut(s) 230, 915, 1008
BsnI GGCC 4 cut(s) 101, 377, 386, 1272
Bso31I GGTCTC 2 cut(s) 221, 586
BsoBI CYCGRG 2 cut(s) 378, 1142
Bsp1286I GDGCHC 4 cut(s) 183, 798, 1078, 1974
Bsp13I TCCGGA 3 cut(s) 207, 1206, 1630
Bsp143I GATC 8 cut(s) 246, 642, 664, 718, 945, 1534, 1848, 2123
Bsp19I CCATGG 1 cut(s) 1576
BspACI CCGC 8 cut(s) 11, 75, 102, 104, 107, 570, 658, 672
BspANI GGCC 4 cut(s) 101, 377, 386, 1272
BspCNI CTCAG 4 cut(s) 169, 852, 907, 1894
BspEI TCCGGA 3 cut(s) 207, 1206, 1630
BspFNI CGCG 3 cut(s) 104, 658, 892
BspHI TCATGA 1 cut(s) 942
BspLI GGNNCC 3 cut(s) 281, 720, 1564
BspMAI CTGCAG 2 cut(s) 1571, 1597
BspPI GGATC 5 cut(s) 672, 713, 726, 1542, 2131
BspT107I GGYRCC 1 cut(s) 1562
BspTNI GGTCTC 2 cut(s) 221, 586
BsrDI GCAATG 2 cut(s) 1188, 1269
BsrFI RCCGGY 3 cut(s) 432, 798, 1868
BssAI RCCGGY 3 cut(s) 432, 798, 1868
BssECI CCNNGG 8 cut(s) 96, 102, 352, 378, 1141, 1273, 1576, 1988
BssMI GATC 8 cut(s) 246, 642, 664, 718, 945, 1534, 1848, 2123
BssNAI GTATAC 1 cut(s) 2068
BssNI GRCGYC 1 cut(s) 1994
BssT1I CCWWGG 1 cut(s) 1576
Bst1107I GTATAC 1 cut(s) 2068
Bst2UI CCWGG 3 cut(s) 1274, 1746, 1989
Bst4CI ACNGT 4 cut(s) 85, 238, 818, 1946
Bst6I CTCTTC 2 cut(s) 224, 1911
BstACI GRCGYC 1 cut(s) 1994
BstAPI GCANNNNNTGC 1 cut(s) 2034
BstC8I GCNNGC 6 cut(s) 888, 1056, 1060, 1101, 1218, 1567
BstDEI CTNAG 5 cut(s) 177, 839, 915, 1881, 1934
BstDSI CCRYGG 3 cut(s) 96, 102, 1576
BstFNI CGCG 3 cut(s) 104, 658, 892
BstHHI GCGC 2 cut(s) 658, 892
BstKTI GATC 8 cut(s) 249, 645, 667, 721, 948, 1537, 1851, 2126
BstMAI GTCTC 3 cut(s) 221, 586, 1919
BstMBI GATC 8 cut(s) 246, 642, 664, 718, 945, 1534, 1848, 2123
BstMCI CGRYCG 2 cut(s) 87, 102
BstMWI GCNNNNNNNGC 6 cut(s) 107, 260, 383, 835, 1601, 2034
BstNI CCWGG 3 cut(s) 1274, 1746, 1989
BstNSI RCATGY 4 cut(s) 175, 559, 959, 1165
BstSCI CCNGG 6 cut(s) 275, 377, 378, 1272, 1744, 1987
BstSFI CTRYAG 2 cut(s) 1567, 1593
BstSLI GKGCMC 1 cut(s) 798
BstUI CGCG 3 cut(s) 104, 658, 892
BstV1I GCAGC 7 cut(s) 477, 1074, 1083, 1253, 1345, 1579, 1616
BstV2I GAAGAC 2 cut(s) 276, 1848
BstX2I RGATCY 2 cut(s) 718, 2123
BstYI RGATCY 2 cut(s) 718, 2123
BstZ17I GTATAC 1 cut(s) 2068
BstZI CGGCCG 1 cut(s) 99
BsuI GTATCC 1 cut(s) 417
BsuRI GGCC 4 cut(s) 101, 377, 386, 1272
BtgI CCRYGG 3 cut(s) 96, 102, 1576
BtsI GCAGTG 3 cut(s) 1211, 2035, 2040
BtsIMutI CAGTG 4 cut(s) 1211, 1951, 2035, 2040
Cac8I GCNNGC 6 cut(s) 888, 1056, 1060, 1101, 1218, 1567
CciI TCATGA 1 cut(s) 942
CfoI GCGC 2 cut(s) 658, 892
Cfr10I RCCGGY 3 cut(s) 432, 798, 1868
Cfr13I GGNCC 1 cut(s) 376
Cfr42I CCGCGG 1 cut(s) 105
Cfr9I CCCGGG 1 cut(s) 378
CseI GACGC 3 cut(s) 236, 656, 2002
Csp6I GTAC 6 cut(s) 532, 559, 814, 843, 1165, 1980
CspAI ACCGGT 2 cut(s) 432, 798
CviQI GTAC 6 cut(s) 532, 559, 814, 843, 1165, 1980
DdeI CTNAG 5 cut(s) 177, 839, 915, 1881, 1934
DpnI GATC 8 cut(s) 248, 644, 666, 720, 947, 1536, 1850, 2125
DpnII GATC 8 cut(s) 246, 642, 664, 718, 945, 1534, 1848, 2123
EaeI YGGCCR 2 cut(s) 99, 1270
EagI CGGCCG 1 cut(s) 99
Eam1104I CTCTTC 2 cut(s) 224, 1911
EarI CTCTTC 2 cut(s) 224, 1911
Ecl136II GAGCTC 2 cut(s) 181, 1076
EclXI CGGCCG 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 1576
Eco24I GRGCYC 3 cut(s) 183, 1078, 1974
Eco31I GGTCTC 2 cut(s) 221, 586
Eco52I CGGCCG 1 cut(s) 99
Eco53kI GAGCTC 2 cut(s) 181, 1076
Eco57I CTGAAG 3 cut(s) 696, 1437, 1515
Eco88I CYCGRG 2 cut(s) 378, 1142
EcoICRI GAGCTC 2 cut(s) 181, 1076
EcoRII CCWGG 3 cut(s) 1272, 1744, 1987
EcoT14I CCWWGG 1 cut(s) 1576
EcoT38I GRGCYC 3 cut(s) 183, 1078, 1974
ErhI CCWWGG 1 cut(s) 1576
FalI AAGNNNNNCTT 2 cut(s) 500, 532
FaqI GGGAC 4 cut(s) 1159, 1862, 2005, 2105
FauI CCCGC 1 cut(s) 563
FauNDI CATATG 1 cut(s) 1648
FbaI TGATCA 2 cut(s) 945, 1848
FblI GTMKAC 1 cut(s) 2067
FriOI GRGCYC 3 cut(s) 183, 1078, 1974
FspBI CTAG 6 cut(s) 155, 512, 1079, 1437, 1619, 1955
GlaI GCGC 2 cut(s) 657, 891
GsaI CCCAGC 2 cut(s) 202, 1377
GsuI CTGGAG 1 cut(s) 151
HaeIII GGCC 4 cut(s) 101, 377, 386, 1272
HapII CCGG 9 cut(s) 208, 276, 379, 433, 799, 1207, 1532, 1631, 1869
HgaI GACGC 3 cut(s) 236, 656, 2002
HhaI GCGC 2 cut(s) 658, 892
Hin1I GRCGYC 1 cut(s) 1994
Hin6I GCGC 2 cut(s) 656, 890
HinP1I GCGC 2 cut(s) 656, 890
HincII GTYRAC 1 cut(s) 1159
HindII GTYRAC 1 cut(s) 1159
HindIII AAGCTT 1 cut(s) 678
HinfI GANTC 8 cut(s) 272, 527, 1429, 1510, 1572, 1799, 1999, 2098
HpaII CCGG 9 cut(s) 208, 276, 379, 433, 799, 1207, 1532, 1631, 1869
HphI GGTGA 5 cut(s) 226, 298, 1045, 1054, 1808
Hpy166II GTNNAC 5 cut(s) 438, 796, 1132, 1159, 2068
Hpy188III TCNNGA 8 cut(s) 47, 208, 943, 1079, 1144, 1207, 1631, 2090
Hpy8I GTNNAC 5 cut(s) 438, 796, 1132, 1159, 2068
Hpy99I CGWCG 3 cut(s) 230, 254, 650
HpyCH4III ACNGT 4 cut(s) 85, 238, 818, 1946
HpyCH4IV ACGT 2 cut(s) 149, 1134
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 260, 383, 835, 1601, 2034
HpyF3I CTNAG 5 cut(s) 177, 839, 915, 1881, 1934
HpySE526I ACGT 2 cut(s) 149, 1134
Hsp92I GRCGYC 1 cut(s) 1994
HspAI GCGC 2 cut(s) 656, 890
Kpn2I TCCGGA 3 cut(s) 207, 1206, 1630
Ksp22I TGATCA 2 cut(s) 945, 1848
KspI CCGCGG 1 cut(s) 105
Kzo9I GATC 8 cut(s) 246, 642, 664, 718, 945, 1534, 1848, 2123
LmnI GCTCC 7 cut(s) 13, 170, 207, 1073, 1179, 1291, 1620
Lsp1109I GCAGC 7 cut(s) 477, 1074, 1083, 1253, 1345, 1579, 1616
LweI GCATC 4 cut(s) 1202, 1296, 1321, 1509
MaeI CTAG 6 cut(s) 155, 512, 1079, 1437, 1619, 1955
MaeII ACGT 2 cut(s) 149, 1134
MaeIII GTNAC 4 cut(s) 150, 611, 730, 1033
MalI GATC 8 cut(s) 248, 644, 666, 720, 947, 1536, 1850, 2125
MboI GATC 8 cut(s) 246, 642, 664, 718, 945, 1534, 1848, 2123
MfeI CAATTG 1 cut(s) 1959
MflI RGATCY 2 cut(s) 718, 2123
MhlI GDGCHC 4 cut(s) 183, 798, 1078, 1974
MlsI TGGCCA 1 cut(s) 1272
MluCI AATT 9 cut(s) 340, 896, 1066, 1122, 1704, 1773, 1784, 1959, 2111
MluNI TGGCCA 1 cut(s) 1272
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 2 cut(s) 401, 914
Mox20I TGGCCA 1 cut(s) 1272
MroI TCCGGA 3 cut(s) 207, 1206, 1630
MroXI GAANNNNTTC 2 cut(s) 926, 2102
MscI TGGCCA 1 cut(s) 1272
MseI TTAA 6 cut(s) 62, 552, 741, 1404, 1626, 2115
MslI CAYNNNNRTG 1 cut(s) 1299
Msp20I TGGCCA 1 cut(s) 1272
MspA1I CMGCKG 3 cut(s) 104, 490, 674
MspI CCGG 9 cut(s) 208, 276, 379, 433, 799, 1207, 1532, 1631, 1869
MspR9I CCNGG 6 cut(s) 277, 379, 380, 1274, 1746, 1989
MunI CAATTG 1 cut(s) 1959
Mva1269I GAATGC 3 cut(s) 230, 915, 1008
MvaI CCWGG 3 cut(s) 1274, 1746, 1989
MvnI CGCG 3 cut(s) 104, 658, 892
MwoI GCNNNNNNNGC 6 cut(s) 107, 260, 383, 835, 1601, 2034
NciI CCSGG 3 cut(s) 277, 379, 380
NcoI CCATGG 1 cut(s) 1576
NdeI CATATG 1 cut(s) 1648
NdeII GATC 8 cut(s) 246, 642, 664, 718, 945, 1534, 1848, 2123
NlaIV GGNNCC 3 cut(s) 281, 720, 1564
NmuCI GTSAC 2 cut(s) 611, 1033
NspI RCATGY 4 cut(s) 175, 559, 959, 1165
PagI TCATGA 1 cut(s) 942
PciI ACATGT 3 cut(s) 555, 955, 1161
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PctI GAATGC 3 cut(s) 230, 915, 1008
PdmI GAANNNNTTC 2 cut(s) 926, 2102
PfeI GAWTC 7 cut(s) 527, 1429, 1510, 1572, 1799, 1999, 2098
PfoI TCCNGGA 2 cut(s) 275, 1744
PinAI ACCGGT 2 cut(s) 432, 798
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PscI ACATGT 3 cut(s) 555, 955, 1161
Psp124BI GAGCTC 2 cut(s) 183, 1078
Psp6I CCWGG 3 cut(s) 1272, 1744, 1987
PspFI CCCAGC 2 cut(s) 198, 1373
PspGI CCWGG 3 cut(s) 1272, 1744, 1987
PspN4I GGNNCC 3 cut(s) 281, 720, 1564
PspPI GGNCC 1 cut(s) 376
PstI CTGCAG 2 cut(s) 1571, 1597
PsuI RGATCY 2 cut(s) 718, 2123
PvuII CAGCTG 1 cut(s) 490
RsaI GTAC 6 cut(s) 533, 560, 815, 844, 1166, 1981
RsaNI GTAC 6 cut(s) 532, 559, 814, 843, 1165, 1980
RseI CAYNNNNRTG 1 cut(s) 1299
SacI GAGCTC 2 cut(s) 183, 1078
SacII CCGCGG 1 cut(s) 105
SaqAI TTAA 6 cut(s) 62, 552, 741, 1404, 1626, 2115
Sau3AI GATC 8 cut(s) 246, 642, 664, 718, 945, 1534, 1848, 2123
Sau96I GGNCC 1 cut(s) 376
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 6 cut(s) 277, 379, 380, 1274, 1746, 1989
SduI GDGCHC 4 cut(s) 183, 798, 1078, 1974
SfaNI GCATC 4 cut(s) 1202, 1296, 1321, 1509
SfcI CTRYAG 2 cut(s) 1567, 1593
SfiI GGCCNNNNNGGCC 1 cut(s) 383
Sfr303I CCGCGG 1 cut(s) 105
SgrAI CRCCGGYG 1 cut(s) 798
SgrBI CCGCGG 1 cut(s) 105
SmaI CCCGGG 1 cut(s) 380
SmiMI CAYNNNNRTG 1 cut(s) 1299
SmlI CTYRAG 3 cut(s) 182, 1010, 1586
SmoI CTYRAG 3 cut(s) 182, 1010, 1586
Sse9I AATT 9 cut(s) 340, 896, 1066, 1122, 1704, 1773, 1784, 1959, 2111
SsiI CCGC 8 cut(s) 11, 75, 102, 104, 107, 570, 658, 672
SspMI CTAG 6 cut(s) 155, 512, 1079, 1437, 1619, 1955
SstI GAGCTC 2 cut(s) 183, 1078
StyD4I CCNGG 6 cut(s) 275, 377, 378, 1272, 1744, 1987
StyI CCWWGG 1 cut(s) 1576
TaaI ACNGT 4 cut(s) 85, 238, 818, 1946
TaiI ACGT 2 cut(s) 152, 1137
TaqI TCGA 7 cut(s) 225, 563, 645, 903, 1767, 1855, 2002
TasI AATT 9 cut(s) 340, 896, 1066, 1122, 1704, 1773, 1784, 1959, 2111
TatI WGTACW 2 cut(s) 558, 1979
TauI GCSGC 3 cut(s) 104, 107, 110
TfiI GAWTC 7 cut(s) 527, 1429, 1510, 1572, 1799, 1999, 2098
Tru1I TTAA 6 cut(s) 62, 552, 741, 1404, 1626, 2115
Tru9I TTAA 6 cut(s) 62, 552, 741, 1404, 1626, 2115
TscAI CASTG 4 cut(s) 1218, 1951, 2035, 2047
TseFI GTSAC 2 cut(s) 611, 1033
TseI GCWGC 8 cut(s) 5, 490, 1062, 1096, 1241, 1358, 1592, 1604
Tsp45I GTSAC 2 cut(s) 611, 1033
TspDTI ATGAA 7 cut(s) 1401, 1541, 1653, 1791, 1797, 1845, 1926
TspMI CCCGGG 1 cut(s) 378
TspRI CASTG 4 cut(s) 1218, 1951, 2035, 2047
VneI GTGCAC 1 cut(s) 794
XapI RAATTY 1 cut(s) 1784
XbaI TCTAGA 1 cut(s) 1078
XceI RCATGY 4 cut(s) 175, 559, 959, 1165
XmaI CCCGGG 1 cut(s) 378
XmiI GTMKAC 1 cut(s) 2067
XmnI GAANNNNTTC 2 cut(s) 926, 2102
XspI CTAG 6 cut(s) 155, 512, 1079, 1437, 1619, 1955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.