Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011508

Physical Location & Seq

Genomic Coordinates Forward (+)

3260678 .. 3262369

Gene Structure 1692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0042000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTCTGCGATTAGGGTCGATGTTAAGCAGTACTACGCCACTAGTAGTCTTCTGATTGGCTATGCACTCTGTTCTAGCTTGTTAGCTGTGATAAACAAGTTTGCCATAACCAAATTCAACTACCCGGGTCTTTTGACCGCTCTGCAATACCTCACTTCTGCTTTGGGGGTTTGGGTTTTGGGAAAGTTGGGGTTTTTGCACCATGATGCATTCACATGGGAAACAGCTAAGAAGTTCTTGCCTGCTGCTTTTGTGTTTTATCTTGCCATTTTCACCAATACTAATCTGCTTCGCCATGCCAATGTGGATACATTTATAGTGTTTCGGTCGTGTACACCCATTTTGGTTGCGCTGGCTGATACGGTGTTTAGGAATCAGAAGTGCCCGTCGAAGCTTACGTTTCTGTCTTTGTTGGTGATTTTGGGGGGAGCTGTTGGGTATGTGGCCACTGATTATGGCTTTACTTTGACTGCTTATTCGTGGGCGTTTGCGTATTTGGTGACCATTACGACTGAGATGGTGTACATTAAGCATATGGTGACGAATCTCGGGTTGAACACTTGGGGTTTTGTGTTGTACAACAATTTGTTGTCATTGATGATGGCTCCGCCGTTCTGGATCATTACAGGAGAGTATGTTGAGGTGTTTGCTGCTTTGGGATCCAAGACTGAGAGTTTCTTTGCACCTGGTGCATTCTTTGCGGTGTCATTGTCGTGTGTGTTTGGCCTGCTCATCAGCTTCTTTGGGTTTGCAGCGAGGAAGGCAGTCTCTGCAACAGCCTTTACAGTGACTGGTGTTGTTAACAAGTTTCTTACGGTTGCTATCAATGTGATGATATGGGATAAGCATGCCAGCCCCTTTGGTTTGTTCTGCCTCCTAATGACAATCATTGGTGGTGTCTTTTATCAGCAATCCGTAACTGGACCTAGCAGTGCCCCATCAAAGAGTGAATCAGCAGTGCCTAAGCAGACTGACAGCGAGAATGATGGTGATGACTTTGACAATGAAAACCAAGGGAAGGCTGTTTCTGCTAAACTTGGGTCTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

349

Amino Acids

38.07

Weight (kDa)

8.47

Isoelectric Point (pI)

31.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	23 - 302	7.6e-15	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011508)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08160 FvH4_1g08160 FvH4_1g08160
malus_domestica	MD02G1086200.v1.1 MD15G1213400.v1.1
prunus_persica	Prupe.7G203500_v2.0.a1
pyrus_communis	pycom02g06940 pycom15g18980
rosa_chinensis	RchiOBHm_Chr2g0094231
rosa_laevigata	RLG00000016468
rosa_multiflora	Rmu_sc0002193.1_g000009 Rmu_sc0006198.1_g000014
rosa_roxburghii	Rroxscaffold_2G00147350
rosa_rugosa	Rorug02G0042000 Rorug02G0042100 Rorug02G0042200
rosa_samantha	Rh2AG089800 Rh2BG089900 Rh2CG092400 Rh2DG088700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	140
AciI	CCGC	3 cut(s)	138, 608, 701
AclWI	GGATC	3 cut(s)	626, 654, 667
AcoI	YGGCCR	1 cut(s)	444
AcsI	RAATTY	1 cut(s)	113
AdeI	CACNNNGTG	1 cut(s)	689
AfaI	GTAC	4 cut(s)	32, 334, 524, 578
AfiI	CCNNNNNNNGG	1 cut(s)	1018
AgsI	TTSAA	2 cut(s)	118, 556
AhlI	ACTAGT	1 cut(s)	41
AjnI	CCWGG	1 cut(s)	685
AluBI	AGCT	6 cut(s)	78, 86, 227, 394, 431, 738
AluI	AGCT	6 cut(s)	78, 86, 227, 394, 431, 738
Alw26I	GTCTC	1 cut(s)	772
AlwI	GGATC	3 cut(s)	626, 654, 667
AlwNI	CAGNNNCTG	2 cut(s)	770, 791
Ama87I	CYCGRG	2 cut(s)	124, 548
AoxI	GGCC	2 cut(s)	444, 724
ApeKI	GCWGC	3 cut(s)	245, 650, 752
ApoI	RAATTY	1 cut(s)	113
ArsI	GACNNNNNNTTYG	2 cut(s)	460, 492
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	923
AsuC2I	CCSGG	2 cut(s)	125, 126
AsuHPI	GGTGA	5 cut(s)	265, 427, 511, 550, 1001
AvaI	CYCGRG	2 cut(s)	124, 548
AvaII	GGWCC	1 cut(s)	923
BaeGI	GKGCMC	2 cut(s)	386, 937
BalI	TGGCCA	1 cut(s)	446
BamHI	GGATCC	1 cut(s)	659
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	3 cut(s)	232, 637, 764
BccI	CCATC	4 cut(s)	511, 595, 946, 980
BceAI	ACGGC	1 cut(s)	595
BciT130I	CCWGG	1 cut(s)	687
BciVI	GTATCC	1 cut(s)	301
BcnI	CCSGG	2 cut(s)	125, 126
BcoDI	GTCTC	1 cut(s)	772
BcuI	ACTAGT	1 cut(s)	41
BfaI	CTAG	3 cut(s)	42, 75, 927
BfuI	GTATCC	1 cut(s)	301
BisI	GCNGC	3 cut(s)	246, 651, 753
BlsI	GCNGC	3 cut(s)	247, 652, 754
BmcAI	AGTACT	1 cut(s)	32
Bme1390I	CCNGG	3 cut(s)	125, 126, 687
Bme18I	GGWCC	1 cut(s)	923
BmeT110I	CYCGRG	2 cut(s)	124, 548
BmgT120I	GGNCC	1 cut(s)	923
BmiI	GGNNCC	2 cut(s)	606, 661
BmrFI	CCNGG	3 cut(s)	125, 126, 687
BmsI	GCATC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	41
Bpu10I	CCTNAGC	1 cut(s)	963
BpuMI	CCSGG	2 cut(s)	125, 126
BsaJI	CCNNGG	2 cut(s)	124, 1012
BsaXI	ACNNNNNCTCC	2 cut(s)	621, 651
Bsc4I	CCNNNNNNNGG	1 cut(s)	1018
Bse1I	ACTGG	2 cut(s)	796, 925
BseBI	CCWGG	1 cut(s)	687
BseDI	CCNNGG	2 cut(s)	124, 1012
BseLI	CCNNNNNNNGG	1 cut(s)	1018
BseMII	CTCAG	2 cut(s)	504, 660
BseNI	ACTGG	2 cut(s)	796, 925
BseSI	GKGCMC	2 cut(s)	386, 937
BseXI	GCAGC	3 cut(s)	232, 637, 764
Bsh1285I	CGRYCG	1 cut(s)	329
BshFI	GGCC	2 cut(s)	446, 726
BsiEI	CGRYCG	1 cut(s)	329
BsiHKCI	CYCGRG	2 cut(s)	124, 548
BsiSI	CCGG	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	1018
BsmAI	GTCTC	1 cut(s)	772
BsmI	GAATGC	2 cut(s)	209, 692
BsnI	GGCC	2 cut(s)	446, 726
BsoBI	CYCGRG	2 cut(s)	124, 548
Bsp1286I	GDGCHC	2 cut(s)	386, 937
Bsp1407I	TGTACA	3 cut(s)	332, 522, 576
Bsp143I	GATC	2 cut(s)	618, 659
BspACI	CCGC	3 cut(s)	138, 608, 701
BspANI	GGCC	2 cut(s)	446, 726
BspCNI	CTCAG	2 cut(s)	505, 661
BspLI	GGNNCC	2 cut(s)	606, 661
BspPI	GGATC	3 cut(s)	626, 654, 667
BsrBI	CCGCTC	1 cut(s)	140
BsrGI	TGTACA	3 cut(s)	332, 522, 576
BsrI	ACTGG	2 cut(s)	796, 925
BssECI	CCNNGG	2 cut(s)	124, 1012
BssMI	GATC	2 cut(s)	618, 659
BssT1I	CCWWGG	1 cut(s)	1012
Bst2UI	CCWGG	1 cut(s)	687
Bst4CI	ACNGT	3 cut(s)	364, 787, 817
BstAPI	GCANNNNNTGC	3 cut(s)	689, 698, 770
BstAUI	TGTACA	3 cut(s)	332, 522, 576
BstC8I	GCNNGC	5 cut(s)	243, 354, 728, 849, 853
BstDEI	CTNAG	4 cut(s)	228, 513, 669, 963
BstEII	GGTNACC	1 cut(s)	499
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	2 cut(s)	621, 662
BstMAI	GTCTC	1 cut(s)	772
BstMBI	GATC	2 cut(s)	618, 659
BstMCI	CGRYCG	1 cut(s)	329
BstMWI	GCNNNNNNNGC	5 cut(s)	689, 698, 761, 770, 1028
BstNI	CCWGG	1 cut(s)	687
BstNSI	RCATGY	1 cut(s)	851
BstPI	GGTNACC	1 cut(s)	499
BstSCI	CCNGG	3 cut(s)	123, 124, 685
BstSLI	GKGCMC	2 cut(s)	386, 937
BstV1I	GCAGC	3 cut(s)	232, 637, 764
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	659
BstYI	RGATCY	1 cut(s)	659
BsuI	GTATCC	1 cut(s)	301
BsuRI	GGCC	2 cut(s)	446, 726
BtsI	GCAGTG	2 cut(s)	937, 963
BtsIMutI	CAGTG	4 cut(s)	447, 792, 937, 963
Cac8I	GCNNGC	5 cut(s)	243, 354, 728, 849, 853
CaiI	CAGNNNCTG	2 cut(s)	770, 791
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	923
Cfr9I	CCCGGG	1 cut(s)	124
CsiI	ACCWGGT	1 cut(s)	685
Csp6I	GTAC	4 cut(s)	31, 333, 523, 577
CviAII	CATG	4 cut(s)	203, 216, 296, 848
CviQI	GTAC	4 cut(s)	31, 333, 523, 577
DdeI	CTNAG	4 cut(s)	228, 513, 669, 963
DpnI	GATC	2 cut(s)	620, 661
DpnII	GATC	2 cut(s)	618, 659
DraIII	CACNNNGTG	1 cut(s)	689
EaeI	YGGCCR	1 cut(s)	444
EciI	GGCGGA	1 cut(s)	597
Eco130I	CCWWGG	1 cut(s)	1012
Eco47I	GGWCC	1 cut(s)	923
Eco88I	CYCGRG	2 cut(s)	124, 548
Eco91I	GGTNACC	1 cut(s)	499
EcoO65I	GGTNACC	1 cut(s)	499
EcoRII	CCWGG	1 cut(s)	685
EcoT14I	CCWWGG	1 cut(s)	1012
EcoT22I	ATGCAT	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	1012
FaeI	CATG	4 cut(s)	206, 219, 299, 851
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FatI	CATG	4 cut(s)	202, 215, 295, 847
FauNDI	CATATG	1 cut(s)	534
Fnu4HI	GCNGC	3 cut(s)	246, 651, 753
Fsp4HI	GCNGC	3 cut(s)	246, 651, 753
FspBI	CTAG	3 cut(s)	42, 75, 927
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	3 cut(s)	246, 651, 753
HaeIII	GGCC	2 cut(s)	446, 726
HapII	CCGG	1 cut(s)	125
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	4 cut(s)	206, 219, 299, 851
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	3 cut(s)	373, 544, 950
HpaI	GTTAAC	1 cut(s)	802
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	5 cut(s)	265, 427, 511, 550, 1001
Hpy166II	GTNNAC	4 cut(s)	333, 335, 523, 802
Hpy188I	TCNGA	2 cut(s)	54, 378
Hpy188III	TCNNGA	1 cut(s)	616
Hpy8I	GTNNAC	4 cut(s)	333, 335, 523, 802
Hpy99I	CGWCG	1 cut(s)	391
HpyAV	CCTTC	2 cut(s)	754, 1012
HpyCH4III	ACNGT	3 cut(s)	364, 787, 817
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	8 cut(s)	65, 145, 199, 209, 683, 692, 752, 773
HpyF10VI	GCNNNNNNNGC	5 cut(s)	689, 698, 761, 770, 1028
HpyF3I	CTNAG	4 cut(s)	228, 513, 669, 963
HpySE526I	ACGT	1 cut(s)	398
Hsp92II	CATG	4 cut(s)	206, 219, 299, 851
HspAI	GCGC	1 cut(s)	350
KspAI	GTTAAC	1 cut(s)	802
Kzo9I	GATC	2 cut(s)	618, 659
LmnI	GCTCC	2 cut(s)	428, 610
Lsp1109I	GCAGC	3 cut(s)	232, 637, 764
LweI	GCATC	1 cut(s)	196
MabI	ACCWGGT	1 cut(s)	685
MaeI	CTAG	3 cut(s)	42, 75, 927
MaeII	ACGT	1 cut(s)	398
MaeIII	GTNAC	4 cut(s)	499, 538, 787, 916
MalI	GATC	2 cut(s)	620, 661
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	2 cut(s)	618, 659
MboII	GAAGA	1 cut(s)	41
MflI	RGATCY	1 cut(s)	659
MhlI	GDGCHC	2 cut(s)	386, 937
MlsI	TGGCCA	1 cut(s)	446
MluCI	AATT	2 cut(s)	113, 583
MluNI	TGGCCA	1 cut(s)	446
MnlI	CCTC	4 cut(s)	161, 634, 750, 884
Mox20I	TGGCCA	1 cut(s)	446
Mph1103I	ATGCAT	1 cut(s)	211
MscI	TGGCCA	1 cut(s)	446
MseI	TTAA	3 cut(s)	24, 528, 801
MslI	CAYNNNNRTG	4 cut(s)	204, 214, 300, 712
Msp20I	TGGCCA	1 cut(s)	446
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	3 cut(s)	125, 126, 687
Mva1269I	GAATGC	2 cut(s)	209, 692
MvaI	CCWGG	1 cut(s)	687
MwoI	GCNNNNNNNGC	5 cut(s)	689, 698, 761, 770, 1028
NciI	CCSGG	2 cut(s)	125, 126
NdeI	CATATG	1 cut(s)	534
NdeII	GATC	2 cut(s)	618, 659
NlaIII	CATG	4 cut(s)	206, 219, 299, 851
NlaIV	GGNNCC	2 cut(s)	606, 661
NmuCI	GTSAC	3 cut(s)	499, 538, 787
NsiI	ATGCAT	1 cut(s)	211
NspI	RCATGY	1 cut(s)	851
PaeI	GCATGC	1 cut(s)	851
PcsI	WCGNNNNNNNCGW	1 cut(s)	395
PctI	GAATGC	2 cut(s)	209, 692
PfeI	GAWTC	3 cut(s)	373, 544, 950
PkrI	GCNGC	3 cut(s)	247, 652, 754
Psp6I	CCWGG	1 cut(s)	685
PspEI	GGTNACC	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	685
PspN4I	GGNNCC	2 cut(s)	606, 661
PspPI	GGNCC	1 cut(s)	923
PstNI	CAGNNNCTG	2 cut(s)	770, 791
PsuI	RGATCY	1 cut(s)	659
RsaI	GTAC	4 cut(s)	32, 334, 524, 578
RsaNI	GTAC	4 cut(s)	31, 333, 523, 577
RseI	CAYNNNNRTG	4 cut(s)	204, 214, 300, 712
SaqAI	TTAA	3 cut(s)	24, 528, 801
SatI	GCNGC	3 cut(s)	246, 651, 753
Sau3AI	GATC	2 cut(s)	618, 659
Sau96I	GGNCC	1 cut(s)	923
ScaI	AGTACT	1 cut(s)	32
ScrFI	CCNGG	3 cut(s)	125, 126, 687
SduI	GDGCHC	2 cut(s)	386, 937
SexAI	ACCWGGT	1 cut(s)	685
SfaNI	GCATC	1 cut(s)	196
SinI	GGWCC	1 cut(s)	923
SmaI	CCCGGG	1 cut(s)	126
SmiMI	CAYNNNNRTG	4 cut(s)	204, 214, 300, 712
SpeI	ACTAGT	1 cut(s)	41
SphI	GCATGC	1 cut(s)	851
Sse9I	AATT	2 cut(s)	113, 583
SsiI	CCGC	3 cut(s)	138, 608, 701
SspMI	CTAG	3 cut(s)	42, 75, 927
StyD4I	CCNGG	3 cut(s)	123, 124, 685
StyI	CCWWGG	1 cut(s)	1012
TaaI	ACNGT	3 cut(s)	364, 787, 817
TaiI	ACGT	1 cut(s)	401
TaqI	TCGA	2 cut(s)	18, 389
TaqII	GACCGA	1 cut(s)	315
TasI	AATT	2 cut(s)	113, 583
TatI	WGTACW	4 cut(s)	30, 332, 522, 576
TfiI	GAWTC	3 cut(s)	373, 544, 950
Tru1I	TTAA	3 cut(s)	24, 528, 801
Tru9I	TTAA	3 cut(s)	24, 528, 801
TscAI	CASTG	4 cut(s)	454, 792, 937, 963
TseFI	GTSAC	3 cut(s)	499, 538, 787
TseI	GCWGC	3 cut(s)	245, 650, 752
Tsp45I	GTSAC	3 cut(s)	499, 538, 787
TspDTI	ATGAA	1 cut(s)	1020
TspGWI	ACGGA	1 cut(s)	904
TspMI	CCCGGG	1 cut(s)	124
TspRI	CASTG	4 cut(s)	454, 792, 937, 963
VpaK11BI	GGWCC	1 cut(s)	923
XapI	RAATTY	1 cut(s)	113
XceI	RCATGY	1 cut(s)	851
XmaI	CCCGGG	1 cut(s)	124
XspI	CTAG	3 cut(s)	42, 75, 927
ZrmI	AGTACT	1 cut(s)	32
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.