Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0011508

Physical Location & Seq

Genomic Coordinates Reverse (-)

4805157 .. 4806892

Gene Structure 1736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g06940.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCCCCTTTATACTAATTCCATGTCGTGGAATCCAAGTGAACAAGTTCCACAACTTTTATCCAAAGATGTAAGCTTCAAAGTGAAATTTCCGCCACAAGTTCATCATGGCGCAAAGCATTTAGGACTCCAACTACAAACAGACCACGGATCATCATCCATAACCCAATCAATCGGTCACTCTCAAGATCCAAGCAATTCATCAGATTCTGGCGAAGTTCAAACATGTGATAAGGATGCTGAAGGCAACATGAAGCCAGTTCTCTTGCAGAGTAATCAAGATTTCATTTTGAATCCTTCTCAAGTTAGTCACGGAAATTTAGTGGGTTGTGTACCATATCCTTATGTCGACCCTTACTTCGGCGGGTTCTTGACTGCATATGGACCACAGGCGATGTCCCATATGGTTGGGATGGCACCTACACGAGTTCTATTGCCTCCCGATCTGGCACAAGATGGACCCATCTACGTCAATGCAAAACAATACCACGGAATCCTCAGAAGGAGACAGTCCCGTGCAAAGTTGGAGGCTCGTAACAAACTTCTCAAAGCTCGAAAGCCTTATCTCCATGAGTCTCGCCATCTTCATGCCGTGAATAGGGTAAGGGGATCTGGTGGACGTTTTCTCAGCACAAAACGACAGTCAGACCAGAACCCCTCCAGTAACACCCACCATGTTTCGGATTCCATCAGCTCACACCAGAAAGATACAGGGGGCACAGAAGGTAATCACTCGGGAAGCAGTGATTTCCTCCCTAGTGTTGCACTCCACTCAGACATGACTAGTGTTTCCAACACCAATGACAACTTTCAGCAACCAGATCGCAGATTCTCAGGCATCCCTCCCCATATGACTGGAGCAATGCAGTTCCCTGGCGGGTTTATGCATGCTGGAAATCAGCACTGTGCTTCTGTTGTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

308

Amino Acids

33.64

Weight (kDa)

9.1

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011508)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08160 FvH4_1g08160 FvH4_1g08160
malus_domestica	MD02G1086200.v1.1 MD15G1213400.v1.1
prunus_persica	Prupe.7G203500_v2.0.a1
pyrus_communis	pycom02g06940 pycom15g18980
rosa_chinensis	RchiOBHm_Chr2g0094231
rosa_laevigata	RLG00000016468
rosa_multiflora	Rmu_sc0002193.1_g000009 Rmu_sc0006198.1_g000014
rosa_roxburghii	Rroxscaffold_2G00147350
rosa_rugosa	Rorug02G0042000 Rorug02G0042100 Rorug02G0042200
rosa_samantha	Rh2AG089800 Rh2BG089900 Rh2CG092400 Rh2DG088700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	415
AccB7I	CCANNNNNTGG	1 cut(s)	27
AccI	GTMKAC	1 cut(s)	348
AciI	CCGC	3 cut(s)	92, 363, 876
AclWI	GGATC	3 cut(s)	157, 182, 616
AcsI	RAATTY	2 cut(s)	86, 316
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	1 cut(s)	333
AfiI	CCNNNNNNNGG	4 cut(s)	27, 359, 597, 679
AflIII	ACRYGT	1 cut(s)	224
AgsI	TTSAA	3 cut(s)	79, 221, 292
AhlI	ACTAGT	1 cut(s)	782
AjnI	CCWGG	1 cut(s)	871
AluBI	AGCT	3 cut(s)	75, 551, 693
AluI	AGCT	3 cut(s)	75, 551, 693
Alw26I	GTCTC	2 cut(s)	499, 579
AlwI	GGATC	3 cut(s)	157, 182, 616
AlwNI	CAGNNNCTG	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	733
ApoI	RAATTY	2 cut(s)	86, 316
ArsI	GACNNNNNNTTYG	4 cut(s)	341, 373, 626, 658
Asp700I	GAANNNNTTC	1 cut(s)	45
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	383, 458
AvaI	CYCGRG	1 cut(s)	733
AvaII	GGWCC	2 cut(s)	383, 458
BaeGI	GKGCMC	1 cut(s)	719
BanI	GGYRCC	1 cut(s)	415
BauI	CACGAG	1 cut(s)	423
BccI	CCATC	5 cut(s)	406, 449, 470, 588, 695
BceAI	ACGGC	1 cut(s)	575
BcgI	CGANNNNNNTGC	2 cut(s)	803, 837
BciT130I	CCWGG	1 cut(s)	873
BcoDI	GTCTC	2 cut(s)	499, 579
BcuI	ACTAGT	1 cut(s)	782
BfaI	CTAG	2 cut(s)	756, 783
Bme1390I	CCNGG	1 cut(s)	873
Bme18I	GGWCC	2 cut(s)	383, 458
BmeT110I	CYCGRG	1 cut(s)	733
BmgT120I	GGNCC	2 cut(s)	383, 458
BmiI	GGNNCC	2 cut(s)	417, 460
BmrFI	CCNGG	1 cut(s)	873
BmsI	GCATC	2 cut(s)	226, 846
BpmI	CTGGAG	2 cut(s)	643, 876
BpuEI	CTTGAG	2 cut(s)	168, 285
BsaBI	GATNNNNATC	1 cut(s)	154
BsaJI	CCNNGG	3 cut(s)	145, 487, 871
BsaWI	WCCGGW	1 cut(s)	918
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 359, 597, 679
Bse1I	ACTGG	3 cut(s)	257, 660, 859
Bse3DI	GCAATG	1 cut(s)	867
Bse8I	GATNNNNATC	1 cut(s)	154
BseBI	CCWGG	1 cut(s)	873
BseDI	CCNNGG	3 cut(s)	145, 487, 871
BseGI	GGATG	4 cut(s)	155, 241, 417, 837
BseJI	GATNNNNATC	1 cut(s)	154
BseLI	CCNNNNNNNGG	4 cut(s)	27, 359, 597, 679
BseMI	GCAATG	1 cut(s)	867
BseMII	CTCAG	4 cut(s)	511, 640, 786, 846
BseNI	ACTGG	3 cut(s)	257, 660, 859
BseSI	GKGCMC	1 cut(s)	719
BshNI	GGYRCC	1 cut(s)	415
BsiHKCI	CYCGRG	1 cut(s)	733
BsiSI	CCGG	1 cut(s)	919
BslFI	GGGAC	2 cut(s)	382, 496
BslI	CCNNNNNNNGG	4 cut(s)	27, 359, 597, 679
BsmAI	GTCTC	2 cut(s)	499, 579
BsmFI	GGGAC	2 cut(s)	382, 496
BsoBI	CYCGRG	1 cut(s)	733
Bsp1286I	GDGCHC	1 cut(s)	719
Bsp143I	GATC	5 cut(s)	149, 187, 442, 608, 820
BspACI	CCGC	3 cut(s)	92, 363, 876
BspCNI	CTCAG	4 cut(s)	510, 639, 785, 845
BspLI	GGNNCC	2 cut(s)	417, 460
BspPI	GGATC	3 cut(s)	157, 182, 616
BspT107I	GGYRCC	1 cut(s)	415
BsrDI	GCAATG	1 cut(s)	867
BsrI	ACTGG	3 cut(s)	257, 660, 859
BssECI	CCNNGG	3 cut(s)	145, 487, 871
BssMI	GATC	5 cut(s)	149, 187, 442, 608, 820
BssSI	CACGAG	1 cut(s)	423
Bst2BI	CACGAG	1 cut(s)	423
Bst2UI	CCWGG	1 cut(s)	873
Bst4CI	ACNGT	3 cut(s)	510, 642, 905
BstC8I	GCNNGC	1 cut(s)	888
BstDEI	CTNAG	4 cut(s)	497, 626, 772, 832
BstDSI	CCRYGG	2 cut(s)	145, 487
BstF5I	GGATG	4 cut(s)	155, 241, 417, 837
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	5 cut(s)	152, 190, 445, 611, 823
BstMAI	GTCTC	2 cut(s)	499, 579
BstMBI	GATC	5 cut(s)	149, 187, 442, 608, 820
BstNI	CCWGG	1 cut(s)	873
BstNSI	RCATGY	2 cut(s)	228, 890
BstSCI	CCNGG	1 cut(s)	871
BstSLI	GKGCMC	1 cut(s)	719
BstX2I	RGATCY	2 cut(s)	187, 608
BstXI	CCANNNNNNTGG	2 cut(s)	407, 854
BstYI	RGATCY	2 cut(s)	187, 608
BtgI	CCRYGG	2 cut(s)	145, 487
BtgZI	GCGATG	1 cut(s)	407
BtsCI	GGATG	4 cut(s)	155, 241, 417, 837
BtsI	GCAGTG	1 cut(s)	748
BtsIMutI	CAGTG	2 cut(s)	748, 901
Cac8I	GCNNGC	1 cut(s)	888
CaiI	CAGNNNCTG	1 cut(s)	209
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	383, 458
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	9 cut(s)	22, 107, 225, 250, 569, 587, 674, 778, 887
CviJI	RGCY	6 cut(s)	75, 256, 530, 551, 559, 693
CviKI_1	RGCY	6 cut(s)	75, 256, 530, 551, 559, 693
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	4 cut(s)	497, 626, 772, 832
DpnI	GATC	5 cut(s)	151, 189, 444, 610, 822
DpnII	GATC	5 cut(s)	149, 187, 442, 608, 820
EciI	GGCGGA	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	383, 458
Eco57I	CTGAAG	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	733
EcoRII	CCWGG	1 cut(s)	871
EcoT22I	ATGCAT	1 cut(s)	888
FaeI	CATG	9 cut(s)	25, 110, 228, 253, 572, 590, 677, 781, 890
FaqI	GGGAC	2 cut(s)	382, 496
FatI	CATG	9 cut(s)	21, 106, 224, 249, 568, 586, 673, 777, 886
FauI	CCCGC	2 cut(s)	356, 869
FauNDI	CATATG	3 cut(s)	379, 402, 849
FblI	GTMKAC	1 cut(s)	348
FokI	GGATG	4 cut(s)	142, 248, 424, 824
FspBI	CTAG	2 cut(s)	756, 783
GlaI	GCGC	1 cut(s)	112
GsuI	CTGGAG	2 cut(s)	643, 876
HapII	CCGG	1 cut(s)	919
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	9 cut(s)	25, 110, 228, 253, 572, 590, 677, 781, 890
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	73
HinfI	GANTC	8 cut(s)	31, 126, 206, 292, 492, 572, 683, 828
HpaII	CCGG	1 cut(s)	919
Hpy166II	GTNNAC	4 cut(s)	41, 332, 349, 617
Hpy188I	TCNGA	5 cut(s)	205, 500, 646, 682, 775
Hpy188III	TCNNGA	5 cut(s)	185, 278, 370, 440, 735
Hpy8I	GTNNAC	4 cut(s)	41, 332, 349, 617
HpyAV	CCTTC	4 cut(s)	236, 306, 495, 716
HpyCH4III	ACNGT	3 cut(s)	510, 642, 905
HpyCH4IV	ACGT	2 cut(s)	468, 619
HpyCH4V	TGCA	7 cut(s)	268, 377, 476, 518, 764, 865, 886
HpyF3I	CTNAG	4 cut(s)	497, 626, 772, 832
HpySE526I	ACGT	2 cut(s)	468, 619
Hsp92II	CATG	9 cut(s)	25, 110, 228, 253, 572, 590, 677, 781, 890
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	5 cut(s)	149, 187, 442, 608, 820
LmnI	GCTCC	1 cut(s)	857
LweI	GCATC	2 cut(s)	226, 846
MaeI	CTAG	2 cut(s)	756, 783
MaeII	ACGT	2 cut(s)	468, 619
MaeIII	GTNAC	4 cut(s)	176, 308, 533, 662
MalI	GATC	5 cut(s)	151, 189, 444, 610, 822
MboI	GATC	5 cut(s)	149, 187, 442, 608, 820
MboII	GAAGA	1 cut(s)	575
MflI	RGATCY	2 cut(s)	187, 608
MhlI	GDGCHC	1 cut(s)	719
MluCI	AATT	4 cut(s)	16, 86, 196, 316
MlyI	GAGTC	2 cut(s)	120, 581
MmeI	TCCRAC	3 cut(s)	154, 504, 816
MnlI	CCTC	6 cut(s)	447, 506, 520, 667, 761, 852
Mph1103I	ATGCAT	1 cut(s)	888
MroXI	GAANNNNTTC	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	585
MspI	CCGG	1 cut(s)	919
MspR9I	CCNGG	1 cut(s)	873
MvaI	CCWGG	1 cut(s)	873
NdeI	CATATG	3 cut(s)	379, 402, 849
NdeII	GATC	5 cut(s)	149, 187, 442, 608, 820
NlaIII	CATG	9 cut(s)	25, 110, 228, 253, 572, 590, 677, 781, 890
NlaIV	GGNNCC	2 cut(s)	417, 460
NmuCI	GTSAC	2 cut(s)	176, 308
NsiI	ATGCAT	1 cut(s)	888
NspI	RCATGY	2 cut(s)	228, 890
PaeI	GCATGC	1 cut(s)	890
PciI	ACATGT	1 cut(s)	224
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	6 cut(s)	31, 206, 292, 492, 683, 828
PflMI	CCANNNNNTGG	1 cut(s)	27
PleI	GAGTC	2 cut(s)	120, 580
PpsI	GAGTC	2 cut(s)	120, 580
PscI	ACATGT	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	871
PspGI	CCWGG	1 cut(s)	871
PspN4I	GGNNCC	2 cut(s)	417, 460
PspPI	GGNCC	2 cut(s)	383, 458
PstNI	CAGNNNCTG	1 cut(s)	209
PsuI	RGATCY	2 cut(s)	187, 608
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
RseI	CAYNNNNRTG	1 cut(s)	585
SalI	GTCGAC	1 cut(s)	347
Sau3AI	GATC	5 cut(s)	149, 187, 442, 608, 820
Sau96I	GGNCC	2 cut(s)	383, 458
SchI	GAGTC	2 cut(s)	120, 581
ScrFI	CCNGG	1 cut(s)	873
SduI	GDGCHC	1 cut(s)	719
SetI	ASST	7 cut(s)	77, 421, 471, 553, 622, 695, 727
SfaNI	GCATC	2 cut(s)	226, 846
SinI	GGWCC	2 cut(s)	383, 458
SmiMI	CAYNNNNRTG	1 cut(s)	585
SmlI	CTYRAG	2 cut(s)	183, 300
SmoI	CTYRAG	2 cut(s)	183, 300
SpeI	ACTAGT	1 cut(s)	782
SphI	GCATGC	1 cut(s)	890
Sse9I	AATT	4 cut(s)	16, 86, 196, 316
SsiI	CCGC	3 cut(s)	92, 363, 876
SspMI	CTAG	2 cut(s)	756, 783
StyD4I	CCNGG	1 cut(s)	871
TaaI	ACNGT	3 cut(s)	510, 642, 905
TaiI	ACGT	2 cut(s)	471, 622
TaqI	TCGA	2 cut(s)	348, 553
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	4 cut(s)	16, 86, 196, 316
TfiI	GAWTC	6 cut(s)	31, 206, 292, 492, 683, 828
TscAI	CASTG	2 cut(s)	748, 908
TseFI	GTSAC	2 cut(s)	176, 308
Tsp45I	GTSAC	2 cut(s)	176, 308
TspDTI	ATGAA	5 cut(s)	92, 189, 266, 274, 575
TspGWI	ACGGA	3 cut(s)	162, 327, 504
TspRI	CASTG	2 cut(s)	748, 908
Van91I	CCANNNNNTGG	1 cut(s)	27
VpaK11BI	GGWCC	2 cut(s)	383, 458
XapI	RAATTY	2 cut(s)	86, 316
XceI	RCATGY	2 cut(s)	228, 890
XmiI	GTMKAC	1 cut(s)	348
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	2 cut(s)	756, 783
Zsp2I	ATGCAT	1 cut(s)	888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.