Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011508

Physical Location & Seq

Genomic Coordinates Forward (+)

3273461 .. 3275401

Gene Structure 1941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0042200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGGAGCCGTACGGCAATTCCGGTGGCGTCAGCAGCAGCGCCAGCTCCTCTTCCTCCTCCTCCATAACCAAGCCGCATGAGATAGACGGGTATTTGGCCGAGGCCGGGTACAAGGTCCGCTCCTCCGACCTACGACACGTCGCTCAGCGCCTCGAGCGCTTGGAAAACGTCATGGTCAACTCCCCCAACGACCTCGCCCACTTCGCCTCCGACGCCGTCATCTACAACCCCTCCGACCTCGCCTCCTGGGTCGACTCCCTCCTCTCCGCCTCCGACCTCTCCATCTCCGATCTCGACTTCCCTGGCGTCATCATCAACAATCATCCCACCGCCGACACGTGGACCGAAATTCCACCGATCTCCGCCGCCGCCTCCGCGCCGCCGCAGAACCACCACCAGGTAACCGCCGTGATGGAGGAAGACTCCGGGATAAGGCTGGTGCAGCTGCTCGTCACGTGCGCCGAGTCCGTCCAGCGCGGCGATCTCGCATTGGCCGGCTCGATTATCGAGACCATGCAGGCGCTGCTCACACGTGTCAACACGGGTTGCGGCATCGGAAAGGTCGCCGGCTACTTCATCGACGCCCTCAGCCGCCGCGTCTTCACCCCGCAGAGCGTCGGCTCCGACGGCGGCTCGGCTCACGAGAACGAGCTTCTCTACCACTACTTCTACGAAGCCTGCCCCTACCTCAAATTCGCGCATTTCACGGCGAACCAGGCGATCTTGGAGGCCTTCCACGGCCACGATTGCGTCCACGTCATCGACTTCAACCTAATGCACGGACTCCAATGGCCGGCGCTGATTCAGGCTCTGGCTTTACGGCCCGGTGGGCCCCCCTTGCTTCGGCTGACGGGCATTGGACCACCGTCACCTGACGGCCGTGACTCGCTAAGAGAAATCGGGCTCCGGCTCGCGGAGCTGGCTCGCTCCGTTAACGTCCGTTTCGCTTTCCGCGGGGTGGCGGCTTCACGGCTCGAGGACGTTAAGCCGTGGATGCTTCAGGTCAGTCCAAAGGAAGCCGTAGCTGTAAACTCGATCATGCAGCTCCATAGACTTCTCGGATCCGATTCGAACCGGAATTCTCCGATTGAAATGATGTTGGGATGGATCCGAAATCTTAACCCGAAGATTGTCACCGTCGTGGAGCAAGAAGCGGACCACAACAAGGCAGGGTTCTTGGAGCGGTTCACGGAGGCTCTTTACTACTACTCCAATATGTTCGACTCGCTCGAAGCTTGCGGCGCCATGCAGCCGGACAAGACCCTAGCGGAGATGTACATACAAAGAGAGATATGTAACGTGGTATGCTGCGAGGGACTGGCTCGCGTCGAGAGACACGAGCCACTCTCCAAGTGGAGAACCCGGCTAGAACTAGCCGGATTCAGCCCGCTCCACTTGGGGTCGAATGCGTTCAAGCAGGCGAGTATGCTGCTGACGCTGTTCTCGGCGGAAGGTTATCGTGTGGAAGAGAAGGAAGGGTGTCTTACACTCGGCTGGCATAGCCGACCTCTGATTGCGGCTTCGGCTTGGCAGGTTATGCCTTTGCCTGAAGCAACCGCAACAGCGACCAACCCACTTGGGATTGTTAATCATAGTGCCAATCATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

536

Amino Acids

58.61

Weight (kDa)

5.6

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DELLA	PF12041	29 - 90	1.8e-27	Transcriptional regulator DELLA protein N terminal
GRAS	PF03514	146 - 511	1.8e-128	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011508)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08160 FvH4_1g08160 FvH4_1g08160
malus_domestica	MD02G1086200.v1.1 MD15G1213400.v1.1
prunus_persica	Prupe.7G203500_v2.0.a1
pyrus_communis	pycom02g06940 pycom15g18980
rosa_chinensis	RchiOBHm_Chr2g0094231
rosa_laevigata	RLG00000016468
rosa_multiflora	Rmu_sc0002193.1_g000009 Rmu_sc0006198.1_g000014
rosa_roxburghii	Rroxscaffold_2G00147350
rosa_rugosa	Rorug02G0042000 Rorug02G0042100 Rorug02G0042200
rosa_samantha	Rh2AG089800 Rh2BG089900 Rh2CG092400 Rh2DG088700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1522
AccB1I	GGYRCC	1 cut(s)	1241
AccBSI	CCGCTC	3 cut(s)	120, 1183, 1390
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	7 cut(s)	377, 477, 597, 698, 914, 954, 1326
AclWI	GGATC	4 cut(s)	1056, 1069, 1102, 1115
AcoI	YGGCCR	5 cut(s)	96, 492, 739, 791, 877
AcsI	RAATTY	3 cut(s)	348, 692, 1078
AcuI	CTGAAG	2 cut(s)	983, 1569
AcvI	CACGTG	3 cut(s)	339, 456, 533
AcyI	GRCGYC	5 cut(s)	27, 213, 306, 582, 1242
AfaI	GTAC	3 cut(s)	11, 110, 1277
AfeI	AGCGCT	1 cut(s)	158
AfiI	CCNNNNNNNGG	9 cut(s)	105, 339, 397, 432, 793, 843, 913, 958, 1165
AflIII	ACRYGT	4 cut(s)	136, 336, 530, 532
AgsI	TTSAA	3 cut(s)	769, 1091, 1414
AjiI	CACGTC	2 cut(s)	139, 757
AjnI	CCWGG	4 cut(s)	245, 301, 396, 714
AleI	CACNNNNGTG	1 cut(s)	1139
AluBI	AGCT	7 cut(s)	45, 445, 652, 919, 1025, 1045, 1235
AluI	AGCT	7 cut(s)	45, 445, 652, 919, 1025, 1045, 1235
Alw26I	GTCTC	2 cut(s)	503, 1327
AlwI	GGATC	4 cut(s)	1056, 1069, 1102, 1115
AlwNI	CAGNNNCTG	2 cut(s)	523, 811
Ama87I	CYCGRG	2 cut(s)	152, 974
Aor51HI	AGCGCT	1 cut(s)	158
AoxI	GGCC	9 cut(s)	96, 102, 492, 729, 739, 791, 821, 830, 877
ApaI	GGGCCC	1 cut(s)	834
ApeKI	GCWGC	9 cut(s)	33, 36, 442, 445, 523, 1042, 1249, 1308, 1429
ApoI	RAATTY	3 cut(s)	348, 692, 1078
Asp700I	GAANNNNTTC	1 cut(s)	1409
AspS9I	GGNCC	7 cut(s)	115, 342, 822, 830, 831, 860, 1156
AsuC2I	CCSGG	4 cut(s)	106, 427, 825, 1363
AsuHPI	GGTGA	3 cut(s)	595, 861, 1126
AsuII	TTCGAA	1 cut(s)	1070
AvaI	CYCGRG	2 cut(s)	152, 974
AvaII	GGWCC	4 cut(s)	115, 342, 860, 1156
BaeGI	GKGCMC	1 cut(s)	834
BamHI	GGATCC	2 cut(s)	1061, 1107
BanI	GGYRCC	1 cut(s)	1241
BanII	GRGCYC	2 cut(s)	834, 906
BauI	CACGAG	2 cut(s)	641, 1337
BbrPI	CACGTG	3 cut(s)	339, 456, 533
BbsI	GAAGAC	2 cut(s)	426, 592
BbvCI	CCTCAGC	1 cut(s)	587
BbvI	GCAGC	9 cut(s)	45, 48, 432, 454, 510, 1054, 1261, 1295, 1416
BccI	CCATC	3 cut(s)	290, 406, 1098
BcgI	CGANNNNNNTGC	2 cut(s)	1411, 1445
BciT130I	CCWGG	4 cut(s)	247, 303, 398, 716
BcnI	CCSGG	4 cut(s)	106, 427, 825, 1363
BcoDI	GTCTC	2 cut(s)	503, 1327
BfaI	CTAG	3 cut(s)	1265, 1367, 1373
BfoI	RGCGCY	6 cut(s)	42, 151, 160, 524, 800, 1245
BfuAI	ACCTGC	1 cut(s)	1522
BglI	GCCNNNNNGGC	1 cut(s)	829
BlpI	GCTNAGC	1 cut(s)	144
Bme1390I	CCNGG	8 cut(s)	106, 247, 303, 398, 427, 716, 825, 1363
Bme18I	GGWCC	4 cut(s)	115, 342, 860, 1156
BmeT110I	CYCGRG	2 cut(s)	152, 974
BmgBI	CACGTC	2 cut(s)	139, 757
BmgT120I	GGNCC	7 cut(s)	115, 342, 822, 830, 831, 860, 1156
BmiI	GGNNCC	8 cut(s)	6, 622, 832, 833, 905, 1063, 1109, 1243
BmrFI	CCNGG	8 cut(s)	106, 247, 303, 398, 427, 716, 825, 1363
BmsI	GCATC	2 cut(s)	561, 984
BoxI	GACNNNNGTC	1 cut(s)	865
BpiI	GAAGAC	2 cut(s)	426, 592
BplI	GAGNNNNNCTC	4 cut(s)	407, 439, 1331, 1363
Bpu10I	CCTNAGC	1 cut(s)	587
Bpu1102I	GCTNAGC	1 cut(s)	144
Bpu14I	TTCGAA	1 cut(s)	1070
BpuMI	CCSGG	4 cut(s)	106, 427, 825, 1363
BsaAI	YACGTR	3 cut(s)	339, 456, 533
BsaHI	GRCGYC	5 cut(s)	27, 213, 306, 582, 1242
BsaI	GGTCTC	1 cut(s)	503
BsaJI	CCNNGG	6 cut(s)	99, 246, 301, 736, 952, 989
BsaWI	WCCGGW	2 cut(s)	20, 1074
BsaXI	ACNNNNNCTCC	8 cut(s)	191, 215, 221, 227, 245, 257, 1193, 1223
Bsc4I	CCNNNNNNNGG	9 cut(s)	105, 339, 397, 432, 793, 843, 913, 958, 1165
Bse118I	RCCGGY	3 cut(s)	494, 566, 793
Bse1I	ACTGG	1 cut(s)	1323
BseBI	CCWGG	4 cut(s)	247, 303, 398, 716
BseDI	CCNNGG	6 cut(s)	99, 246, 301, 736, 952, 989
BseGI	GGATG	3 cut(s)	322, 999, 1109
BseLI	CCNNNNNNNGG	9 cut(s)	105, 339, 397, 432, 793, 843, 913, 958, 1165
BseMII	CTCAG	2 cut(s)	158, 601
BseNI	ACTGG	1 cut(s)	1323
BseRI	GAGGAG	5 cut(s)	37, 46, 49, 112, 251
BseSI	GKGCMC	1 cut(s)	834
BseX3I	CGGCCG	1 cut(s)	877
BseXI	GCAGC	9 cut(s)	45, 48, 432, 454, 510, 1054, 1261, 1295, 1416
BsgI	GTGCAG	1 cut(s)	461
Bsh1236I	CGCG	7 cut(s)	377, 477, 597, 698, 914, 954, 1326
Bsh1285I	CGRYCG	1 cut(s)	880
BshFI	GGCC	9 cut(s)	98, 104, 494, 731, 741, 793, 823, 832, 879
BshNI	GGYRCC	1 cut(s)	1241
BsiEI	CGRYCG	1 cut(s)	880
BsiHKCI	CYCGRG	2 cut(s)	152, 974
BsiWI	CGTACG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	1329
BslI	CCNNNNNNNGG	9 cut(s)	105, 339, 397, 432, 793, 843, 913, 958, 1165
BsmAI	GTCTC	2 cut(s)	503, 1327
BsmFI	GGGAC	1 cut(s)	1329
BsmI	GAATGC	1 cut(s)	1411
BsnI	GGCC	9 cut(s)	98, 104, 494, 731, 741, 793, 823, 832, 879
Bso31I	GGTCTC	1 cut(s)	503
BsoBI	CYCGRG	2 cut(s)	152, 974
Bsp119I	TTCGAA	1 cut(s)	1070
Bsp120I	GGGCCC	1 cut(s)	830
Bsp1286I	GDGCHC	2 cut(s)	834, 906
Bsp1407I	TGTACA	1 cut(s)	1275
Bsp143I	GATC	7 cut(s)	289, 357, 481, 720, 1035, 1061, 1107
Bsp1720I	GCTNAGC	1 cut(s)	144
BspANI	GGCC	9 cut(s)	98, 104, 494, 731, 741, 793, 823, 832, 879
BspCNI	CTCAG	2 cut(s)	157, 600
BspFNI	CGCG	7 cut(s)	377, 477, 597, 698, 914, 954, 1326
BspLI	GGNNCC	8 cut(s)	6, 622, 832, 833, 905, 1063, 1109, 1243
BspMI	ACCTGC	1 cut(s)	1522
BspPI	GGATC	4 cut(s)	1056, 1069, 1102, 1115
BspT104I	TTCGAA	1 cut(s)	1070
BspT107I	GGYRCC	1 cut(s)	1241
BspTNI	GGTCTC	1 cut(s)	503
BsrBI	CCGCTC	3 cut(s)	120, 1183, 1390
BsrFI	RCCGGY	3 cut(s)	494, 566, 793
BsrGI	TGTACA	1 cut(s)	1275
BsrI	ACTGG	1 cut(s)	1323
BssAI	RCCGGY	3 cut(s)	494, 566, 793
BssECI	CCNNGG	6 cut(s)	99, 246, 301, 736, 952, 989
BssMI	GATC	7 cut(s)	289, 357, 481, 720, 1035, 1061, 1107
BssNI	GRCGYC	5 cut(s)	27, 213, 306, 582, 1242
BssSI	CACGAG	2 cut(s)	641, 1337
Bst2BI	CACGAG	2 cut(s)	641, 1337
Bst2UI	CCWGG	4 cut(s)	247, 303, 398, 716
Bst4CI	ACNGT	2 cut(s)	867, 1138
Bst6I	CTCTTC	2 cut(s)	55, 1461
BstACI	GRCGYC	5 cut(s)	27, 213, 306, 582, 1242
BstAPI	GCANNNNNTGC	2 cut(s)	523, 1537
BstAUI	TGTACA	1 cut(s)	1275
BstBAI	YACGTR	3 cut(s)	339, 456, 533
BstBI	TTCGAA	1 cut(s)	1070
BstDEI	CTNAG	3 cut(s)	144, 587, 890
BstDSI	CCRYGG	3 cut(s)	736, 952, 989
BstEII	GGTNACC	1 cut(s)	400
BstF5I	GGATG	3 cut(s)	322, 999, 1109
BstFNI	CGCG	7 cut(s)	377, 477, 597, 698, 914, 954, 1326
BstH2I	RGCGCY	6 cut(s)	42, 151, 160, 524, 800, 1245
BstKTI	GATC	7 cut(s)	292, 360, 484, 723, 1038, 1064, 1110
BstMAI	GTCTC	2 cut(s)	503, 1327
BstMBI	GATC	7 cut(s)	289, 357, 481, 720, 1035, 1061, 1107
BstMCI	CGRYCG	1 cut(s)	880
BstNI	CCWGG	4 cut(s)	247, 303, 398, 716
BstPAI	GACNNNNGTC	1 cut(s)	865
BstPI	GGTNACC	1 cut(s)	400
BstSCI	CCNGG	8 cut(s)	104, 245, 301, 396, 425, 714, 823, 1361
BstSLI	GKGCMC	1 cut(s)	834
BstUI	CGCG	7 cut(s)	377, 477, 597, 698, 914, 954, 1326
BstV1I	GCAGC	9 cut(s)	45, 48, 432, 454, 510, 1054, 1261, 1295, 1416
BstV2I	GAAGAC	2 cut(s)	426, 592
BstX2I	RGATCY	2 cut(s)	1061, 1107
BstYI	RGATCY	2 cut(s)	1061, 1107
BstZI	CGGCCG	1 cut(s)	877
BsuRI	GGCC	9 cut(s)	98, 104, 494, 731, 741, 793, 823, 832, 879
BtgI	CCRYGG	3 cut(s)	736, 952, 989
BtrI	CACGTC	2 cut(s)	139, 757
BtsCI	GGATG	3 cut(s)	322, 999, 1109
BveI	ACCTGC	1 cut(s)	1522
CaiI	CAGNNNCTG	2 cut(s)	523, 811
Cfr10I	RCCGGY	3 cut(s)	494, 566, 793
Cfr13I	GGNCC	7 cut(s)	115, 342, 822, 830, 831, 860, 1156
Cfr42I	CCGCGG	1 cut(s)	955
CseI	GACGC	9 cut(s)	16, 221, 295, 586, 590, 604, 739, 1315, 1444
CsiI	ACCWGGT	1 cut(s)	396
Csp6I	GTAC	3 cut(s)	10, 109, 1276
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviAII	CATG	6 cut(s)	77, 172, 514, 1039, 1246, 1604
CviQI	GTAC	3 cut(s)	10, 109, 1276
DdeI	CTNAG	3 cut(s)	144, 587, 890
DinI	GGCGCC	1 cut(s)	1243
DpnI	GATC	7 cut(s)	291, 359, 483, 722, 1037, 1063, 1109
DpnII	GATC	7 cut(s)	289, 357, 481, 720, 1035, 1061, 1107
EaeI	YGGCCR	5 cut(s)	96, 492, 739, 791, 877
EagI	CGGCCG	1 cut(s)	877
Eam1104I	CTCTTC	2 cut(s)	55, 1461
EarI	CTCTTC	2 cut(s)	55, 1461
EciI	GGCGGA	3 cut(s)	256, 352, 1463
EclXI	CGGCCG	1 cut(s)	877
Eco147I	AGGCCT	1 cut(s)	731
Eco24I	GRGCYC	2 cut(s)	834, 906
Eco31I	GGTCTC	1 cut(s)	503
Eco47I	GGWCC	4 cut(s)	115, 342, 860, 1156
Eco47III	AGCGCT	1 cut(s)	158
Eco52I	CGGCCG	1 cut(s)	877
Eco57I	CTGAAG	2 cut(s)	983, 1569
Eco72I	CACGTG	3 cut(s)	339, 456, 533
Eco88I	CYCGRG	2 cut(s)	152, 974
Eco91I	GGTNACC	1 cut(s)	400
EcoO109I	RGGNCCY	1 cut(s)	831
EcoO65I	GGTNACC	1 cut(s)	400
EcoRI	GAATTC	1 cut(s)	1078
EcoRII	CCWGG	4 cut(s)	245, 301, 396, 714
EcoT38I	GRGCYC	2 cut(s)	834, 906
EgeI	GGCGCC	1 cut(s)	1243
EheI	GGCGCC	1 cut(s)	1243
FaeI	CATG	6 cut(s)	80, 175, 517, 1042, 1249, 1607
FalI	AAGNNNNNCTT	2 cut(s)	1467, 1499
FaqI	GGGAC	1 cut(s)	1329
FatI	CATG	6 cut(s)	76, 171, 513, 1038, 1245, 1603
FauI	CCCGC	3 cut(s)	615, 947, 1395
FblI	GTMKAC	1 cut(s)	252
FokI	GGATG	3 cut(s)	309, 1006, 1116
FriOI	GRGCYC	2 cut(s)	834, 906
FspBI	CTAG	3 cut(s)	1265, 1367, 1373
HaeII	RGCGCY	6 cut(s)	42, 151, 160, 524, 800, 1245
HaeIII	GGCC	9 cut(s)	98, 104, 494, 731, 741, 793, 823, 832, 879
HgaI	GACGC	9 cut(s)	16, 221, 295, 586, 590, 604, 739, 1315, 1444
Hin1I	GRCGYC	5 cut(s)	27, 213, 306, 582, 1242
Hin1II	CATG	6 cut(s)	80, 175, 517, 1042, 1249, 1607
HincII	GTYRAC	4 cut(s)	178, 253, 538, 934
HindII	GTYRAC	4 cut(s)	178, 253, 538, 934
HindIII	AAGCTT	1 cut(s)	1233
HinfI	GANTC	9 cut(s)	254, 422, 464, 783, 802, 884, 1067, 1223, 1380
HpaI	GTTAAC	1 cut(s)	934
HphI	GGTGA	3 cut(s)	595, 861, 1126
Hpy166II	GTNNAC	8 cut(s)	178, 253, 342, 538, 754, 934, 1030, 1188
Hpy188III	TCNNGA	4 cut(s)	293, 508, 641, 1330
Hpy8I	GTNNAC	8 cut(s)	178, 253, 342, 538, 754, 934, 1030, 1188
Hpy99I	CGWCG	7 cut(s)	143, 215, 584, 620, 629, 1142, 1331
HpyAV	CCTTC	4 cut(s)	742, 1445, 1465, 1469
HpyCH4III	ACNGT	2 cut(s)	867, 1138
HpyCH4IV	ACGT	9 cut(s)	138, 168, 338, 455, 532, 756, 936, 981, 1299
HpyCH4V	TGCA	5 cut(s)	442, 517, 778, 1042, 1249
HpyF3I	CTNAG	3 cut(s)	144, 587, 890
HpySE526I	ACGT	9 cut(s)	138, 168, 338, 455, 532, 756, 936, 981, 1299
Hsp92I	GRCGYC	5 cut(s)	27, 213, 306, 582, 1242
Hsp92II	CATG	6 cut(s)	80, 175, 517, 1042, 1249, 1607
KasI	GGCGCC	1 cut(s)	1241
KroI	GCCGGC	3 cut(s)	494, 566, 793
KroNI	GCCGGC	3 cut(s)	496, 568, 795
KspAI	GTTAAC	1 cut(s)	934
KspI	CCGCGG	1 cut(s)	955
Kzo9I	GATC	7 cut(s)	289, 357, 481, 720, 1035, 1061, 1107
Lsp1109I	GCAGC	9 cut(s)	45, 48, 432, 454, 510, 1054, 1261, 1295, 1416
LweI	GCATC	2 cut(s)	561, 984
MabI	ACCWGGT	1 cut(s)	396
MaeI	CTAG	3 cut(s)	1265, 1367, 1373
MaeII	ACGT	9 cut(s)	138, 168, 338, 455, 532, 756, 936, 981, 1299
MaeIII	GTNAC	6 cut(s)	400, 451, 867, 881, 1132, 1295
MalI	GATC	7 cut(s)	291, 359, 483, 722, 1037, 1063, 1109
MbiI	CCGCTC	3 cut(s)	120, 1183, 1390
MboI	GATC	7 cut(s)	289, 357, 481, 720, 1035, 1061, 1107
MboII	GAAGA	5 cut(s)	42, 431, 592, 1138, 1478
MflI	RGATCY	2 cut(s)	1061, 1107
MhlI	GDGCHC	2 cut(s)	834, 906
MluCI	AATT	4 cut(s)	16, 348, 692, 1078
Mly113I	GGCGCC	1 cut(s)	1242
MlyI	GAGTC	6 cut(s)	248, 416, 473, 777, 878, 1217
MmeI	TCCRAC	5 cut(s)	150, 234, 258, 297, 648
MroNI	GCCGGC	3 cut(s)	494, 566, 793
MroXI	GAANNNNTTC	1 cut(s)	1409
MseI	TTAA	4 cut(s)	933, 984, 1119, 1587
MslI	CAYNNNNRTG	1 cut(s)	1139
MspA1I	CMGCKG	2 cut(s)	445, 954
MspR9I	CCNGG	8 cut(s)	106, 247, 303, 398, 427, 716, 825, 1363
Mva1269I	GAATGC	1 cut(s)	1411
MvaI	CCWGG	4 cut(s)	247, 303, 398, 716
MvnI	CGCG	7 cut(s)	377, 477, 597, 698, 914, 954, 1326
NaeI	GCCGGC	3 cut(s)	496, 568, 795
NarI	GGCGCC	1 cut(s)	1242
NciI	CCSGG	4 cut(s)	106, 427, 825, 1363
NdeII	GATC	7 cut(s)	289, 357, 481, 720, 1035, 1061, 1107
NgoMIV	GCCGGC	3 cut(s)	494, 566, 793
NlaIII	CATG	6 cut(s)	80, 175, 517, 1042, 1249, 1607
NlaIV	GGNNCC	8 cut(s)	6, 622, 832, 833, 905, 1063, 1109, 1243
NmeAIII	GCCGAG	5 cut(s)	124, 487, 614, 1424, 1470
NmuCI	GTSAC	4 cut(s)	451, 867, 881, 1132
NspV	TTCGAA	1 cut(s)	1070
OliI	CACNNNNGTG	1 cut(s)	1139
PaeR7I	CTCGAG	2 cut(s)	152, 974
PceI	AGGCCT	1 cut(s)	731
PcsI	WCGNNNNNNNCGW	2 cut(s)	1227, 1335
PctI	GAATGC	1 cut(s)	1411
PdiI	GCCGGC	3 cut(s)	496, 568, 795
PdmI	GAANNNNTTC	1 cut(s)	1409
PfeI	GAWTC	3 cut(s)	802, 1067, 1380
Pfl23II	CGTACG	1 cut(s)	9
PflFI	GACNNNGTC	1 cut(s)	215
PfoI	TCCNGGA	1 cut(s)	425
PleI	GAGTC	6 cut(s)	248, 416, 472, 777, 878, 1217
PluTI	GGCGCC	1 cut(s)	1245
PmaCI	CACGTG	3 cut(s)	339, 456, 533
PmlI	CACGTG	3 cut(s)	339, 456, 533
PpsI	GAGTC	6 cut(s)	248, 416, 472, 777, 878, 1217
Ppu21I	YACGTR	3 cut(s)	339, 456, 533
PshAI	GACNNNNGTC	1 cut(s)	865
Psp6I	CCWGG	4 cut(s)	245, 301, 396, 714
PspCI	CACGTG	3 cut(s)	339, 456, 533
PspEI	GGTNACC	1 cut(s)	400
PspGI	CCWGG	4 cut(s)	245, 301, 396, 714
PspLI	CGTACG	1 cut(s)	9
PspN4I	GGNNCC	8 cut(s)	6, 622, 832, 833, 905, 1063, 1109, 1243
PspOMI	GGGCCC	1 cut(s)	830
PspPI	GGNCC	7 cut(s)	115, 342, 822, 830, 831, 860, 1156
PspXI	VCTCGAGB	2 cut(s)	152, 974
PstNI	CAGNNNCTG	2 cut(s)	523, 811
PsuI	RGATCY	2 cut(s)	1061, 1107
PsyI	GACNNNGTC	1 cut(s)	215
PvuII	CAGCTG	1 cut(s)	445
RsaI	GTAC	3 cut(s)	11, 110, 1277
RsaNI	GTAC	3 cut(s)	10, 109, 1276
RseI	CAYNNNNRTG	1 cut(s)	1139
SacII	CCGCGG	1 cut(s)	955
SalI	GTCGAC	1 cut(s)	251
SaqAI	TTAA	4 cut(s)	933, 984, 1119, 1587
Sau3AI	GATC	7 cut(s)	289, 357, 481, 720, 1035, 1061, 1107
Sau96I	GGNCC	7 cut(s)	115, 342, 822, 830, 831, 860, 1156
SchI	GAGTC	6 cut(s)	248, 416, 473, 777, 878, 1217
ScrFI	CCNGG	8 cut(s)	106, 247, 303, 398, 427, 716, 825, 1363
SduI	GDGCHC	2 cut(s)	834, 906
SexAI	ACCWGGT	1 cut(s)	396
SfaNI	GCATC	2 cut(s)	561, 984
SfiI	GGCCNNNNNGGCC	1 cut(s)	829
SfoI	GGCGCC	1 cut(s)	1243
Sfr274I	CTCGAG	2 cut(s)	152, 974
Sfr303I	CCGCGG	1 cut(s)	955
SfuI	TTCGAA	1 cut(s)	1070
SgrBI	CCGCGG	1 cut(s)	955
SinI	GGWCC	4 cut(s)	115, 342, 860, 1156
SlaI	CTCGAG	2 cut(s)	152, 974
SmiMI	CAYNNNNRTG	1 cut(s)	1139
SmlI	CTYRAG	2 cut(s)	152, 974
SmoI	CTYRAG	2 cut(s)	152, 974
Sse9I	AATT	4 cut(s)	16, 348, 692, 1078
SseBI	AGGCCT	1 cut(s)	731
SspDI	GGCGCC	1 cut(s)	1241
SspMI	CTAG	3 cut(s)	1265, 1367, 1373
StuI	AGGCCT	1 cut(s)	731
StyD4I	CCNGG	8 cut(s)	104, 245, 301, 396, 425, 714, 823, 1361
TaaI	ACNGT	2 cut(s)	867, 1138
TaiI	ACGT	9 cut(s)	141, 171, 341, 458, 535, 759, 939, 984, 1302
TaqII	GACCGA	1 cut(s)	359
TasI	AATT	4 cut(s)	16, 348, 692, 1078
TatI	WGTACW	1 cut(s)	1275
TfiI	GAWTC	3 cut(s)	802, 1067, 1380
Tru1I	TTAA	4 cut(s)	933, 984, 1119, 1587
Tru9I	TTAA	4 cut(s)	933, 984, 1119, 1587
TseFI	GTSAC	4 cut(s)	451, 867, 881, 1132
TseI	GCWGC	9 cut(s)	33, 36, 442, 445, 523, 1042, 1249, 1308, 1429
Tsp45I	GTSAC	4 cut(s)	451, 867, 881, 1132
TspDTI	ATGAA	1 cut(s)	565
TspGWI	ACGGA	5 cut(s)	457, 795, 919, 929, 1205
Tth111I	GACNNNGTC	1 cut(s)	215
VpaK11BI	GGWCC	4 cut(s)	115, 342, 860, 1156
XapI	RAATTY	3 cut(s)	348, 692, 1078
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1350
XhoI	CTCGAG	2 cut(s)	152, 974
XmiI	GTMKAC	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	1409
XspI	CTAG	3 cut(s)	1265, 1367, 1373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.