FvH4_1g08390
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016234
Physical Location & Seq
Forward (+)
4431972 .. 4433824
1853 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08390.t1

Sequence Viewer

Length: 891 bp
ATGGGGAGAAGCCCTTGTTGTGCCAAGGAGGGCTTGAACAAAGGTGCGTGGACTGCTCTCGAAGATAGAGTTCTGTCTGAATACATCAAAGTCCATGGTGAAGGAGGATGGAGAAATCTCCCTAAGAAAGCAGGACTGAAACGATGTGGGAAGAGCTGCAGGCTTAGGTGGTTGAACTATCTAAGACCAGACATCAAGAGAGGCAACATCTCACCTGATGAAGAAGAGCTCATCGTCAGGCTTCACAAGCTCCTGGGCAACAGATGGTCTCTAATAGCGGGGAGGCTACCAGGACGAACAGACAATGAAATCAAAAACTACTGGAATACCAATCTGAGCAAACGAGTTCCAGACCAAGAAGCTCATTCATCATCACCCTCATCAGCTGGTCATGGTGAACCAAGATCCAATAAGGCCAAGAATGTTATGTCCCATAATGTGGTAAGAACCAAAGCTGCCAAGTGCACCAAAGTATTCATCAACCCACAGTTACCACGCAAAGGGTTGCTCCTTGCTGATGATCACAAGCCTGAGGATTATCATCGTCAACAAGCAGTAGTAGATCATCAGCCTGATGGGAATGGGTTGTCGTCTCCATCTTTGTTGGAAAACTCTTCTTCATCAGATTTCCTGATGGATTTCGACATGAATTCCGAGCTTTGCTTGGCCAATCTCCTCGGTTTGGAATTTTCAAGCGGCGGTGATAACTTGTTCTCTGAAGAAATGCAGCTGCATCAGCAATATTGGAGTGATAATGTTGGTAGTGGTGAGGATTGTGTTGCTGATGATCAATTTCAACCAACTACGATCCTCAATTTCCAGTCATTGAATTCTTTTCTAAATGCTGATGCTAACCAAGGAGACTGGCTCGAACTTGCAGAGACTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

297

Amino Acids

33.08

Weight (kDa)

6.15

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.5e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.7e-08 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 4.3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 114 2.5e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08390 FvH4_1g08390
malus_domestica MD02G1087900.v1.1 MD15G1215500.v1.1
prunus_persica Prupe.7G201600_v2.0.a1
pyrus_communis pycom02g07060 pycom15g19120
rosa_chinensis RchiOBHm_Chr2g0094491
rosa_laevigata RLG00000016495
rosa_multiflora Rmu_sc0004359.1_g000048
rosa_roxburghii Rroxscaffold_2G00147130
rosa_rugosa Rorug02G0044200
rosa_samantha Rh2BG092700 Rh2CG095200 Rh2DG091500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 439
AciI CCGC 3 cut(s) 278, 696, 699
AclWI GGATC 2 cut(s) 399, 802
AcoI YGGCCR 1 cut(s) 666
AcsI RAATTY 3 cut(s) 649, 686, 829
AcuI CTGAAG 1 cut(s) 738
AfiI CCNNNNNNNGG 3 cut(s) 439, 500, 682
AgsI TTSAA 5 cut(s) 37, 175, 693, 797, 829
AhlI ACTAGT 1 cut(s) 884
AjnI CCWGG 2 cut(s) 252, 289
AluBI AGCT 8 cut(s) 156, 229, 250, 362, 386, 455, 658, 730
AluI AGCT 8 cut(s) 156, 229, 250, 362, 386, 455, 658, 730
Alw21I GWGCWC 2 cut(s) 231, 467
Alw26I GTCTC 4 cut(s) 273, 597, 855, 875
Alw44I GTGCAC 1 cut(s) 463
AlwI GGATC 2 cut(s) 399, 802
AoxI GGCC 2 cut(s) 414, 666
ApaLI GTGCAC 1 cut(s) 463
ApeKI GCWGC 4 cut(s) 156, 455, 727, 730
ApoI RAATTY 3 cut(s) 649, 686, 829
AsuHPI GGTGA 6 cut(s) 110, 204, 366, 407, 713, 779
AxyI CCTNAGG 1 cut(s) 531
BaeGI GKGCMC 1 cut(s) 467
BalI TGGCCA 1 cut(s) 668
BanII GRGCYC 1 cut(s) 231
Bbv12I GWGCWC 2 cut(s) 231, 467
BbvI GCAGC 4 cut(s) 143, 442, 717, 739
BccI CCATC 5 cut(s) 102, 258, 569, 604, 628
BciT130I CCWGG 2 cut(s) 254, 291
BclI TGATCA 2 cut(s) 520, 787
BcoDI GTCTC 4 cut(s) 273, 597, 855, 875
BcuI ACTAGT 1 cut(s) 884
BfaI CTAG 1 cut(s) 885
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 5 cut(s) 157, 456, 697, 728, 731
BlsI GCNGC 5 cut(s) 158, 457, 698, 729, 732
Bme1390I CCNGG 2 cut(s) 254, 291
BmrFI CCNGG 2 cut(s) 254, 291
BmsI GCATC 2 cut(s) 742, 838
BplI GAGNNNNNCTC 2 cut(s) 852, 884
Bpu10I CCTNAGC 1 cut(s) 164
BsaBI GATNNNNATC 1 cut(s) 540
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 5 cut(s) 24, 94, 253, 676, 856
Bsc4I CCNNNNNNNGG 3 cut(s) 439, 500, 682
Bse1I ACTGG 3 cut(s) 326, 820, 869
Bse21I CCTNAGG 1 cut(s) 531
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 2 cut(s) 254, 291
BseDI CCNNGG 5 cut(s) 24, 94, 253, 676, 856
BseGI GGATG 1 cut(s) 113
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 3 cut(s) 439, 500, 682
BseMII CTCAG 2 cut(s) 326, 522
BseNI ACTGG 3 cut(s) 326, 820, 869
BseRI GAGGAG 1 cut(s) 665
BseSI GKGCMC 1 cut(s) 467
BseXI GCAGC 4 cut(s) 143, 442, 717, 739
BshFI GGCC 2 cut(s) 416, 668
BsiHKAI GWGCWC 2 cut(s) 231, 467
BslFI GGGAC 1 cut(s) 415
BslI CCNNNNNNNGG 3 cut(s) 439, 500, 682
BsmAI GTCTC 4 cut(s) 273, 597, 855, 875
BsmBI CGTCTC 1 cut(s) 597
BsmFI GGGAC 1 cut(s) 415
BsnI GGCC 2 cut(s) 416, 668
Bso31I GGTCTC 1 cut(s) 273
Bsp1286I GDGCHC 2 cut(s) 231, 467
Bsp143I GATC 5 cut(s) 404, 520, 562, 787, 807
Bsp19I CCATGG 1 cut(s) 94
BspACI CCGC 3 cut(s) 278, 696, 699
BspANI GGCC 2 cut(s) 416, 668
BspCNI CTCAG 2 cut(s) 327, 523
BspMAI CTGCAG 1 cut(s) 161
BspPI GGATC 2 cut(s) 399, 802
BspQI GCTCTTC 2 cut(s) 146, 219
BspTNI GGTCTC 1 cut(s) 273
BsrI ACTGG 3 cut(s) 326, 820, 869
BssECI CCNNGG 5 cut(s) 24, 94, 253, 676, 856
BssMI GATC 5 cut(s) 404, 520, 562, 787, 807
BssT1I CCWWGG 3 cut(s) 24, 94, 856
Bst2UI CCWGG 2 cut(s) 254, 291
Bst4CI ACNGT 1 cut(s) 489
Bst6I CTCTTC 3 cut(s) 146, 219, 619
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 5 cut(s) 123, 164, 182, 335, 531
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 1 cut(s) 113
BstKTI GATC 5 cut(s) 407, 523, 565, 790, 810
BstMAI GTCTC 4 cut(s) 273, 597, 855, 875
BstMBI GATC 5 cut(s) 404, 520, 562, 787, 807
BstMWI GCNNNNNNNGC 3 cut(s) 53, 247, 736
BstNI CCWGG 2 cut(s) 254, 291
BstSCI CCNGG 2 cut(s) 252, 289
BstSFI CTRYAG 1 cut(s) 157
BstSLI GKGCMC 1 cut(s) 467
BstV1I GCAGC 4 cut(s) 143, 442, 717, 739
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
Bsu36I CCTNAGG 1 cut(s) 531
BsuRI GGCC 2 cut(s) 416, 668
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 161
CviAII CATG 3 cut(s) 95, 392, 646
DdeI CTNAG 5 cut(s) 123, 164, 182, 335, 531
DpnI GATC 5 cut(s) 406, 522, 564, 789, 809
DpnII GATC 5 cut(s) 404, 520, 562, 787, 807
EaeI YGGCCR 1 cut(s) 666
Eam1104I CTCTTC 3 cut(s) 146, 219, 619
EarI CTCTTC 3 cut(s) 146, 219, 619
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 3 cut(s) 24, 94, 856
Eco24I GRGCYC 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 738
Eco81I CCTNAGG 1 cut(s) 531
EcoICRI GAGCTC 1 cut(s) 229
EcoRI GAATTC 2 cut(s) 649, 829
EcoRII CCWGG 2 cut(s) 252, 289
EcoT14I CCWWGG 3 cut(s) 24, 94, 856
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 3 cut(s) 24, 94, 856
Esp3I CGTCTC 1 cut(s) 597
FaeI CATG 3 cut(s) 98, 395, 649
FaiI YATR 5 cut(s) 96, 393, 428, 435, 647
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FaqI GGGAC 1 cut(s) 415
FatI CATG 3 cut(s) 94, 391, 645
FauI CCCGC 1 cut(s) 271
FbaI TGATCA 2 cut(s) 520, 787
Fnu4HI GCNGC 5 cut(s) 157, 456, 697, 728, 731
FokI GGATG 1 cut(s) 120
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 5 cut(s) 157, 456, 697, 728, 731
FspBI CTAG 1 cut(s) 885
GluI GCNGC 5 cut(s) 157, 456, 697, 728, 731
HaeIII GGCC 2 cut(s) 416, 668
Hin1II CATG 3 cut(s) 98, 395, 649
HincII GTYRAC 1 cut(s) 548
HindII GTYRAC 1 cut(s) 548
HphI GGTGA 6 cut(s) 110, 204, 366, 407, 713, 779
Hpy166II GTNNAC 4 cut(s) 51, 398, 465, 548
Hpy188I TCNGA 5 cut(s) 79, 336, 625, 655, 718
Hpy188III TCNNGA 4 cut(s) 59, 196, 350, 631
Hpy8I GTNNAC 4 cut(s) 51, 398, 465, 548
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4V TGCA 5 cut(s) 159, 465, 727, 733, 878
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 247, 736
HpyF3I CTNAG 5 cut(s) 123, 164, 182, 335, 531
Hsp92II CATG 3 cut(s) 98, 395, 649
Ksp22I TGATCA 2 cut(s) 520, 787
Kzo9I GATC 5 cut(s) 404, 520, 562, 787, 807
LguI GCTCTTC 2 cut(s) 146, 219
LmnI GCTCC 2 cut(s) 255, 513
Lsp1109I GCAGC 4 cut(s) 143, 442, 717, 739
LweI GCATC 2 cut(s) 742, 838
MaeI CTAG 1 cut(s) 885
MaeIII GTNAC 1 cut(s) 489
MalI GATC 5 cut(s) 406, 522, 564, 789, 809
MboI GATC 5 cut(s) 404, 520, 562, 787, 807
MboII GAAGA 7 cut(s) 74, 163, 233, 236, 606, 609, 731
MflI RGATCY 1 cut(s) 404
MhlI GDGCHC 2 cut(s) 231, 467
MlsI TGGCCA 1 cut(s) 668
MluCI AATT 5 cut(s) 649, 686, 791, 814, 829
MluNI TGGCCA 1 cut(s) 668
MmeI TCCRAC 1 cut(s) 585
MnlI CCTC 9 cut(s) 22, 98, 194, 276, 388, 526, 686, 763, 821
Mox20I TGGCCA 1 cut(s) 668
MscI TGGCCA 1 cut(s) 668
Msp20I TGGCCA 1 cut(s) 668
MspA1I CMGCKG 2 cut(s) 386, 730
MspR9I CCNGG 2 cut(s) 254, 291
MvaI CCWGG 2 cut(s) 254, 291
MwoI GCNNNNNNNGC 3 cut(s) 53, 247, 736
NcoI CCATGG 1 cut(s) 94
NdeII GATC 5 cut(s) 404, 520, 562, 787, 807
NlaIII CATG 3 cut(s) 98, 395, 649
PciSI GCTCTTC 2 cut(s) 146, 219
PflMI CCANNNNNTGG 1 cut(s) 439
PkrI GCNGC 5 cut(s) 158, 457, 698, 729, 732
Psp124BI GAGCTC 1 cut(s) 231
Psp6I CCWGG 2 cut(s) 252, 289
PspGI CCWGG 2 cut(s) 252, 289
PstI CTGCAG 1 cut(s) 161
PsuI RGATCY 1 cut(s) 404
PvuII CAGCTG 2 cut(s) 386, 730
SacI GAGCTC 1 cut(s) 231
SapI GCTCTTC 2 cut(s) 146, 219
SatI GCNGC 5 cut(s) 157, 456, 697, 728, 731
Sau3AI GATC 5 cut(s) 404, 520, 562, 787, 807
ScrFI CCNGG 2 cut(s) 254, 291
SduI GDGCHC 2 cut(s) 231, 467
SfaNI GCATC 2 cut(s) 742, 838
SfcI CTRYAG 1 cut(s) 157
SpeI ACTAGT 1 cut(s) 884
Sse9I AATT 5 cut(s) 649, 686, 791, 814, 829
SsiI CCGC 3 cut(s) 278, 696, 699
SspI AATATT 1 cut(s) 743
SspMI CTAG 1 cut(s) 885
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 252, 289
StyI CCWWGG 3 cut(s) 24, 94, 856
TaaI ACNGT 1 cut(s) 489
TaqI TCGA 3 cut(s) 60, 642, 870
TasI AATT 5 cut(s) 649, 686, 791, 814, 829
TauI GCSGC 1 cut(s) 699
TseI GCWGC 4 cut(s) 156, 455, 727, 730
TspDTI ATGAA 6 cut(s) 234, 321, 357, 466, 609, 662
Van91I CCANNNNNTGG 1 cut(s) 439
VneI GTGCAC 1 cut(s) 463
XapI RAATTY 3 cut(s) 649, 686, 829
XspI CTAG 1 cut(s) 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.