Rh2BG092700
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0016234
Physical Location & Seq
Forward (+)
7248504 .. 7250172
1669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG092700.1

Sequence Viewer

Length: 798 bp
ATGCCTCTAACTAATTTCCTATGCAATGTTATAATTGAAGGACTGAAAAGGTGTGGGAAGAGCTGCAGGCTTAGGTGGTTGAACTATTTGAGACCAGACATTAAGAGAGGCAACATATCACCTGATGAAGAAGAGCTCATCGTCAAGCTTCACAAGCTCTTGGGCAACAGATGGTCTCTAATAGCGGGTAGGCTACCAGGGCGAACAGACAATGAAATAAAAAACTACTGGAACACCAATCTGAGCAAAAGAATTCAAGACCAAGAAGCTCGCTCATCGCCCTCATCAGCTGGTGGTGAAGAACCAAAATCAAAAAAGGCCAAGAATGTTATGGCCTCGCCATTTTCCCATAATGTGATAAGAACAAAAGCTGCTAAGTGCAACAAAGTTTTCATCAACCCACAGTTACCACACAAAGGGTTGTTCCAGATGGATGATCACAGGCCTATGGATCATCATCAACATGTAGATCATCGACCTGATGAGAATGGGTTGTCATCGTCGCCATCTTTGTTGGAAACCTCGACTTCATCAGAGTTCCTGGTGGATTTCGGCATGAATTCCGACCTTTGCCTGGCCAGTCTCCTCAGTTCGAAATTTTCAAGTGGTGATCACTTGTTCTCTGAAGAAATGCAGCTGCAAGAGCAATATTGGAGTGGTAATGTTGGTAGTGGTGAGGATTGTGTTGTTGACGATCAACTTCAACTAAATACGGTCCTCAATTTCCAGTCATTGAATTATTTTCTGGATGCTGATGCTAACCAAGGAGACTGGCTCGAACTTGCAGAGAGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

265

Amino Acids

29.9

Weight (kDa)

5.85

Isoelectric Point (pI)

55.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 36 - 81 2.4e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 40 - 88 3.7e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08390 FvH4_1g08390
malus_domestica MD02G1087900.v1.1 MD15G1215500.v1.1
prunus_persica Prupe.7G201600_v2.0.a1
pyrus_communis pycom02g07060 pycom15g19120
rosa_chinensis RchiOBHm_Chr2g0094491
rosa_laevigata RLG00000016495
rosa_multiflora Rmu_sc0004359.1_g000048
rosa_roxburghii Rroxscaffold_2G00147130
rosa_rugosa Rorug02G0044200
rosa_samantha Rh2BG092700 Rh2CG095200 Rh2DG091500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 32
AciI CCGC 1 cut(s) 185
AclWI GGATC 1 cut(s) 459
AcoI YGGCCR 1 cut(s) 576
AcsI RAATTY 3 cut(s) 252, 559, 596
AcuI CTGAAG 1 cut(s) 645
AfiI CCNNNNNNNGG 2 cut(s) 416, 574
AflIII ACRYGT 1 cut(s) 463
AgsI TTSAA 6 cut(s) 38, 82, 257, 603, 704, 736
AjnI CCWGG 3 cut(s) 196, 540, 573
AluBI AGCT 8 cut(s) 63, 136, 148, 157, 269, 290, 371, 637
AluI AGCT 8 cut(s) 63, 136, 148, 157, 269, 290, 371, 637
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 4 cut(s) 85, 180, 587, 762
AlwI GGATC 1 cut(s) 459
AoxI GGCC 4 cut(s) 318, 333, 443, 576
ApeKI GCWGC 4 cut(s) 63, 371, 634, 637
ApoI RAATTY 3 cut(s) 252, 559, 596
AspS9I GGNCC 1 cut(s) 715
AsuHPI GGTGA 4 cut(s) 111, 308, 620, 686
AsuII TTCGAA 1 cut(s) 593
AvaII GGWCC 1 cut(s) 715
BalI TGGCCA 1 cut(s) 578
BanII GRGCYC 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 4 cut(s) 50, 358, 624, 646
BccI CCATC 3 cut(s) 165, 424, 514
BciT130I CCWGG 3 cut(s) 198, 542, 575
BclI TGATCA 2 cut(s) 436, 610
BcoDI GTCTC 4 cut(s) 85, 180, 587, 762
BfmI CTRYAG 1 cut(s) 64
BisI GCNGC 4 cut(s) 64, 372, 635, 638
BlsI GCNGC 4 cut(s) 65, 373, 636, 639
Bme1390I CCNGG 3 cut(s) 198, 542, 575
Bme18I GGWCC 1 cut(s) 715
BmgT120I GGNCC 1 cut(s) 715
BmrFI CCNGG 3 cut(s) 198, 542, 575
BmsI GCATC 2 cut(s) 739, 745
BplI GAGNNNNNCTC 2 cut(s) 759, 791
Bpu10I CCTNAGC 1 cut(s) 71
Bpu14I TTCGAA 1 cut(s) 593
BsaBI GATNNNNATC 1 cut(s) 456
BsaI GGTCTC 2 cut(s) 85, 180
BsaJI CCNNGG 2 cut(s) 197, 763
Bsc4I CCNNNNNNNGG 2 cut(s) 416, 574
Bse1I ACTGG 4 cut(s) 233, 579, 727, 776
Bse3DI GCAATG 1 cut(s) 31
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 3 cut(s) 198, 542, 575
BseDI CCNNGG 2 cut(s) 197, 763
BseGI GGATG 2 cut(s) 439, 754
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 2 cut(s) 416, 574
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 2 cut(s) 233, 601
BseNI ACTGG 4 cut(s) 233, 579, 727, 776
BseRI GAGGAG 1 cut(s) 575
BseXI GCAGC 4 cut(s) 50, 358, 624, 646
BshFI GGCC 4 cut(s) 320, 335, 445, 578
BsiHKAI GWGCWC 1 cut(s) 138
BslI CCNNNNNNNGG 2 cut(s) 416, 574
BsmAI GTCTC 4 cut(s) 85, 180, 587, 762
BsnI GGCC 4 cut(s) 320, 335, 445, 578
Bso31I GGTCTC 2 cut(s) 85, 180
Bsp119I TTCGAA 1 cut(s) 593
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 5 cut(s) 436, 451, 469, 610, 694
BspACI CCGC 1 cut(s) 185
BspANI GGCC 4 cut(s) 320, 335, 445, 578
BspCNI CTCAG 2 cut(s) 234, 600
BspMAI CTGCAG 1 cut(s) 68
BspPI GGATC 1 cut(s) 459
BspQI GCTCTTC 2 cut(s) 53, 126
BspT104I TTCGAA 1 cut(s) 593
BspTNI GGTCTC 2 cut(s) 85, 180
BsrDI GCAATG 1 cut(s) 31
BsrI ACTGG 4 cut(s) 233, 579, 727, 776
BssECI CCNNGG 2 cut(s) 197, 763
BssMI GATC 5 cut(s) 436, 451, 469, 610, 694
BssT1I CCWWGG 1 cut(s) 763
Bst2UI CCWGG 3 cut(s) 198, 542, 575
Bst4CI ACNGT 2 cut(s) 405, 715
Bst6I CTCTTC 2 cut(s) 53, 126
BstBI TTCGAA 1 cut(s) 593
BstC8I GCNNGC 2 cut(s) 68, 271
BstDEI CTNAG 4 cut(s) 71, 242, 375, 587
BstF5I GGATG 2 cut(s) 439, 754
BstKTI GATC 5 cut(s) 439, 454, 472, 613, 697
BstMAI GTCTC 4 cut(s) 85, 180, 587, 762
BstMBI GATC 5 cut(s) 436, 451, 469, 610, 694
BstMWI GCNNNNNNNGC 3 cut(s) 154, 199, 643
BstNI CCWGG 3 cut(s) 198, 542, 575
BstNSI RCATGY 1 cut(s) 467
BstSCI CCNGG 3 cut(s) 196, 540, 573
BstSFI CTRYAG 1 cut(s) 64
BstV1I GCAGC 4 cut(s) 50, 358, 624, 646
BsuRI GGCC 4 cut(s) 320, 335, 445, 578
BtgZI GCGATG 1 cut(s) 261
BtsCI GGATG 2 cut(s) 439, 754
Cac8I GCNNGC 2 cut(s) 68, 271
Cfr13I GGNCC 1 cut(s) 715
CviAII CATG 2 cut(s) 464, 556
DdeI CTNAG 4 cut(s) 71, 242, 375, 587
DpnI GATC 5 cut(s) 438, 453, 471, 612, 696
DpnII GATC 5 cut(s) 436, 451, 469, 610, 694
EaeI YGGCCR 1 cut(s) 576
Eam1104I CTCTTC 2 cut(s) 53, 126
EarI CTCTTC 2 cut(s) 53, 126
Ecl136II GAGCTC 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 763
Eco147I AGGCCT 1 cut(s) 445
Eco24I GRGCYC 1 cut(s) 138
Eco31I GGTCTC 2 cut(s) 85, 180
Eco47I GGWCC 1 cut(s) 715
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 645
EcoICRI GAGCTC 1 cut(s) 136
EcoRI GAATTC 2 cut(s) 252, 559
EcoRII CCWGG 3 cut(s) 196, 540, 573
EcoT14I CCWWGG 1 cut(s) 763
EcoT38I GRGCYC 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 763
FaeI CATG 2 cut(s) 467, 559
FaiI YATR 8 cut(s) 22, 32, 116, 332, 351, 449, 465, 557
FatI CATG 2 cut(s) 463, 555
FauI CCCGC 1 cut(s) 178
FbaI TGATCA 2 cut(s) 436, 610
Fnu4HI GCNGC 4 cut(s) 64, 372, 635, 638
FokI GGATG 2 cut(s) 446, 761
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 4 cut(s) 64, 372, 635, 638
GluI GCNGC 4 cut(s) 64, 372, 635, 638
HaeIII GGCC 4 cut(s) 320, 335, 445, 578
Hin1II CATG 2 cut(s) 467, 559
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HindIII AAGCTT 1 cut(s) 146
HphI GGTGA 4 cut(s) 111, 308, 620, 686
Hpy166II GTNNAC 1 cut(s) 691
Hpy188I TCNGA 4 cut(s) 243, 535, 565, 625
Hpy188III TCNNGA 3 cut(s) 257, 427, 746
Hpy8I GTNNAC 1 cut(s) 691
Hpy99I CGWCG 1 cut(s) 505
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 2 cut(s) 405, 715
HpyCH4V TGCA 6 cut(s) 24, 66, 381, 634, 640, 785
HpyF10VI GCNNNNNNNGC 3 cut(s) 154, 199, 643
HpyF3I CTNAG 4 cut(s) 71, 242, 375, 587
Hsp92II CATG 2 cut(s) 467, 559
Ksp22I TGATCA 2 cut(s) 436, 610
Kzo9I GATC 5 cut(s) 436, 451, 469, 610, 694
LguI GCTCTTC 2 cut(s) 53, 126
Lsp1109I GCAGC 4 cut(s) 50, 358, 624, 646
LweI GCATC 2 cut(s) 739, 745
MaeIII GTNAC 1 cut(s) 405
MalI GATC 5 cut(s) 438, 453, 471, 612, 696
MboI GATC 5 cut(s) 436, 451, 469, 610, 694
MboII GAAGA 5 cut(s) 70, 140, 143, 311, 638
MhlI GDGCHC 1 cut(s) 138
MlsI TGGCCA 1 cut(s) 578
MluCI AATT 7 cut(s) 13, 33, 252, 559, 596, 721, 736
MluNI TGGCCA 1 cut(s) 578
MmeI TCCRAC 2 cut(s) 495, 588
MnlI CCTC 8 cut(s) 15, 101, 292, 346, 532, 596, 670, 728
Mox20I TGGCCA 1 cut(s) 578
MscI TGGCCA 1 cut(s) 578
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 1 cut(s) 462
Msp20I TGGCCA 1 cut(s) 578
MspA1I CMGCKG 2 cut(s) 290, 637
MspR9I CCNGG 3 cut(s) 198, 542, 575
MvaI CCWGG 3 cut(s) 198, 542, 575
MwoI GCNNNNNNNGC 3 cut(s) 154, 199, 643
NdeII GATC 5 cut(s) 436, 451, 469, 610, 694
NlaIII CATG 2 cut(s) 467, 559
NspI RCATGY 1 cut(s) 467
NspV TTCGAA 1 cut(s) 593
PceI AGGCCT 1 cut(s) 445
PciI ACATGT 1 cut(s) 463
PciSI GCTCTTC 2 cut(s) 53, 126
PkrI GCNGC 4 cut(s) 65, 373, 636, 639
PscI ACATGT 1 cut(s) 463
PsiI TTATAA 1 cut(s) 32
Psp124BI GAGCTC 1 cut(s) 138
Psp6I CCWGG 3 cut(s) 196, 540, 573
PspGI CCWGG 3 cut(s) 196, 540, 573
PspPI GGNCC 1 cut(s) 715
PstI CTGCAG 1 cut(s) 68
PvuII CAGCTG 2 cut(s) 290, 637
RseI CAYNNNNRTG 1 cut(s) 462
SacI GAGCTC 1 cut(s) 138
SapI GCTCTTC 2 cut(s) 53, 126
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 4 cut(s) 64, 372, 635, 638
Sau3AI GATC 5 cut(s) 436, 451, 469, 610, 694
Sau96I GGNCC 1 cut(s) 715
ScrFI CCNGG 3 cut(s) 198, 542, 575
SduI GDGCHC 1 cut(s) 138
SfaNI GCATC 2 cut(s) 739, 745
SfcI CTRYAG 1 cut(s) 64
SfuI TTCGAA 1 cut(s) 593
SinI GGWCC 1 cut(s) 715
SmiMI CAYNNNNRTG 1 cut(s) 462
Sse9I AATT 7 cut(s) 13, 33, 252, 559, 596, 721, 736
SseBI AGGCCT 1 cut(s) 445
SsiI CCGC 1 cut(s) 185
SspI AATATT 1 cut(s) 650
SstI GAGCTC 1 cut(s) 138
StuI AGGCCT 1 cut(s) 445
StyD4I CCNGG 3 cut(s) 196, 540, 573
StyI CCWWGG 1 cut(s) 763
TaaI ACNGT 2 cut(s) 405, 715
TaqI TCGA 4 cut(s) 475, 524, 593, 777
TasI AATT 7 cut(s) 13, 33, 252, 559, 596, 721, 736
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseI GCWGC 4 cut(s) 63, 371, 634, 637
TspDTI ATGAA 5 cut(s) 141, 228, 382, 519, 572
VpaK11BI GGWCC 1 cut(s) 715
XapI RAATTY 3 cut(s) 252, 559, 596
XceI RCATGY 1 cut(s) 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.