MD15G1215500.v1.1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0016234
Physical Location & Seq
Forward (+)
17377902 .. 17379378
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1215500.v1.1.491

Sequence Viewer

Length: 984 bp
ATGGGGAGAAGCCCTTGTTGTGCAAAGGAGGGCTTGAACAGAGGTGCTTGGACTGCCCATGAAGACAAAGTTCTCACTCAATACATCAAGCTCCATGGTGAAGGCAGATGGAGAAACCTTCCCAAGAAAGCAGGTTTGAAAAGATGTGGGAAGAGCTGCAGGCTTAGGTGGTTGAATTATCTGAGGCCAGACATTAAGAGAGGCAACATATCTCCAGATGAAGAAGAGCTTATCATTAGGCTTCACAAGCTTCTGGGGAACAGATGGTCTCTAATAGCTGGTAGGCTTCCAGGGCGAACAGACAATGAAATAAAGAACTACTGGAATACAAATTTAGGTAAAAAAGTTCCTGACCGACAACAACAAAGATCTGCTTCAAATCTCAAGCACCACAAAAATGGTGAACCAAATTCCAAGAAAGCAAAAAGTATGGACATGGCATCACCATCATCCCTTGTTTACCGTACCAAAGCTGTTAAGTGTACCCAAGTTTTCATCAACCCACAGCCACACAAAGTCCTACTTGGTCATGATCATCAACACTGCACTGAAGAAACAAACACAGTACTAATGTTTGATGGCAAGCCAGCAGCTATGGATGATGACCACATTAATCGGACACTTTCGTTTTCTTCATTCTCTAATATCAATGCTGATCAAGAAAATTCAACCTCGGATTTTTTGGTGGATTTTGACATGAACGAGATTAGCATAGCCAGTCTTCTGAATTCGGATTTCCCTGAAATTAATCGCGATTACTTGAATCATAATAACAGTGACACTATCACGTCACATTTTGTAGATGAAACCGCTCAATTTTTTTCAGAGGAAATGCTGCAACATTGGAATAATGGTGGTAGCGATGATGGTGATAATCAAGTTCAAGTTCAGCCAAATTTGGCTCTCAATTTCCATTCCTTCACTTCTTTTCTGGGTTCTGATCATCAAGGGGAAGAATGGCTTGGAGTTGGAGAGAGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

328

Amino Acids

37.14

Weight (kDa)

6.57

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.1e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 5.1e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 3.9e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 113 1.5e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08390 FvH4_1g08390
malus_domestica MD02G1087900.v1.1 MD15G1215500.v1.1
prunus_persica Prupe.7G201600_v2.0.a1
pyrus_communis pycom02g07060 pycom15g19120
rosa_chinensis RchiOBHm_Chr2g0094491
rosa_laevigata RLG00000016495
rosa_multiflora Rmu_sc0004359.1_g000048
rosa_roxburghii Rroxscaffold_2G00147130
rosa_rugosa Rorug02G0044200
rosa_samantha Rh2BG092700 Rh2CG095200 Rh2DG091500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 122
AccBSI CCGCTC 1 cut(s) 812
AccII CGCG 1 cut(s) 753
AciI CCGC 1 cut(s) 810
AcsI RAATTY 5 cut(s) 331, 409, 664, 727, 895
AcuI CTGAAG 1 cut(s) 570
AfaI GTAC 3 cut(s) 466, 484, 567
AgsI TTSAA 7 cut(s) 37, 139, 175, 378, 669, 763, 884
AjiI CACGTC 1 cut(s) 789
AjnI CCWGG 1 cut(s) 289
AjuI GAANNNNNNNTTGG 2 cut(s) 945, 977
AluBI AGCT 7 cut(s) 91, 156, 229, 250, 278, 473, 593
AluI AGCT 7 cut(s) 91, 156, 229, 250, 278, 473, 593
Alw26I GTCTC 1 cut(s) 273
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 3 cut(s) 156, 590, 835
ApoI RAATTY 5 cut(s) 331, 409, 664, 727, 895
AseI ATTAAT 2 cut(s) 612, 747
AsuHPI GGTGA 4 cut(s) 110, 413, 435, 881
BbsI GAAGAC 2 cut(s) 69, 713
BbvI GCAGC 3 cut(s) 143, 602, 822
BccI CCATC 5 cut(s) 102, 258, 454, 572, 860
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 3 cut(s) 532, 655, 940
BcoDI GTCTC 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 157
BfuAI ACCTGC 1 cut(s) 122
BglII AGATCT 1 cut(s) 368
BisI GCNGC 3 cut(s) 157, 591, 836
BlsI GCNGC 3 cut(s) 158, 592, 837
BmcAI AGTACT 1 cut(s) 567
Bme1390I CCNGG 1 cut(s) 291
BmgBI CACGTC 1 cut(s) 789
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 449
BpiI GAAGAC 2 cut(s) 69, 713
BpmI CTGGAG 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 368
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 3 cut(s) 94, 290, 672
Bse1I ACTGG 2 cut(s) 326, 717
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 3 cut(s) 94, 290, 672
BseGI GGATG 2 cut(s) 449, 604
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 2 cut(s) 326, 717
BseXI GCAGC 3 cut(s) 143, 602, 822
BsgI GTGCAG 1 cut(s) 529
Bsh1236I CGCG 1 cut(s) 753
BshFI GGCC 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 273
BsnI GGCC 1 cut(s) 187
Bso31I GGTCTC 1 cut(s) 273
Bsp143I GATC 4 cut(s) 368, 532, 655, 940
Bsp19I CCATGG 1 cut(s) 94
Bsp68I TCGCGA 1 cut(s) 753
BspACI CCGC 1 cut(s) 810
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 1 cut(s) 174
BspFNI CGCG 1 cut(s) 753
BspHI TCATGA 1 cut(s) 529
BspMAI CTGCAG 1 cut(s) 161
BspMI ACCTGC 1 cut(s) 122
BspQI GCTCTTC 2 cut(s) 146, 219
BspTNI GGTCTC 1 cut(s) 273
BsrBI CCGCTC 1 cut(s) 812
BsrI ACTGG 2 cut(s) 326, 717
BssECI CCNNGG 3 cut(s) 94, 290, 672
BssMI GATC 4 cut(s) 368, 532, 655, 940
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 464, 565, 776
Bst6I CTCTTC 2 cut(s) 146, 219
BstC8I GCNNGC 3 cut(s) 161, 584, 588
BstDEI CTNAG 2 cut(s) 164, 182
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 2 cut(s) 449, 604
BstFNI CGCG 1 cut(s) 753
BstKTI GATC 4 cut(s) 371, 535, 658, 943
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 4 cut(s) 368, 532, 655, 940
BstMWI GCNNNNNNNGC 3 cut(s) 53, 247, 292
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 1 cut(s) 753
BstV1I GCAGC 3 cut(s) 143, 602, 822
BstV2I GAAGAC 2 cut(s) 69, 713
BstX2I RGATCY 1 cut(s) 368
BstXI CCANNNNNNTGG 1 cut(s) 398
BstYI RGATCY 1 cut(s) 368
BsuRI GGCC 1 cut(s) 187
BtgI CCRYGG 1 cut(s) 94
BtgZI GCGATG 1 cut(s) 876
BtrI CACGTC 1 cut(s) 789
BtsCI GGATG 2 cut(s) 449, 604
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 3 cut(s) 541, 546, 781
BtuMI TCGCGA 1 cut(s) 753
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 3 cut(s) 161, 584, 588
CciI TCATGA 1 cut(s) 529
Csp6I GTAC 3 cut(s) 465, 483, 566
CviAII CATG 5 cut(s) 59, 95, 436, 530, 697
CviQI GTAC 3 cut(s) 465, 483, 566
DdeI CTNAG 2 cut(s) 164, 182
DpnI GATC 4 cut(s) 370, 534, 657, 942
DpnII GATC 4 cut(s) 368, 532, 655, 940
Eam1104I CTCTTC 2 cut(s) 146, 219
EarI CTCTTC 2 cut(s) 146, 219
Eco130I CCWWGG 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 570
EcoRI GAATTC 1 cut(s) 727
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 5 cut(s) 62, 98, 439, 533, 700
FatI CATG 5 cut(s) 58, 94, 435, 529, 696
FbaI TGATCA 3 cut(s) 532, 655, 940
Fnu4HI GCNGC 3 cut(s) 157, 591, 836
FokI GGATG 2 cut(s) 436, 611
Fsp4HI GCNGC 3 cut(s) 157, 591, 836
GluI GCNGC 3 cut(s) 157, 591, 836
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 187
Hin1II CATG 5 cut(s) 62, 98, 439, 533, 700
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 1 cut(s) 763
HphI GGTGA 4 cut(s) 110, 413, 435, 881
Hpy166II GTNNAC 3 cut(s) 404, 460, 483
Hpy188I TCNGA 7 cut(s) 183, 618, 676, 726, 733, 826, 940
Hpy188III TCNNGA 5 cut(s) 215, 350, 530, 659, 752
Hpy8I GTNNAC 3 cut(s) 404, 460, 483
HpyAV CCTTC 3 cut(s) 95, 128, 928
HpyCH4III ACNGT 3 cut(s) 464, 565, 776
HpyCH4IV ACGT 1 cut(s) 788
HpyCH4V TGCA 4 cut(s) 23, 159, 546, 838
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 247, 292
HpyF3I CTNAG 2 cut(s) 164, 182
HpySE526I ACGT 1 cut(s) 788
Hsp92II CATG 5 cut(s) 62, 98, 439, 533, 700
Ksp22I TGATCA 3 cut(s) 532, 655, 940
Kzo9I GATC 4 cut(s) 368, 532, 655, 940
LguI GCTCTTC 2 cut(s) 146, 219
LmnI GCTCC 1 cut(s) 96
Lsp1109I GCAGC 3 cut(s) 143, 602, 822
LweI GCATC 1 cut(s) 449
MaeII ACGT 1 cut(s) 788
MaeIII GTNAC 2 cut(s) 776, 789
MalI GATC 4 cut(s) 370, 534, 657, 942
MbiI CCGCTC 1 cut(s) 812
MboI GATC 4 cut(s) 368, 532, 655, 940
MboII GAAGA 8 cut(s) 74, 163, 233, 236, 563, 624, 713, 965
MflI RGATCY 1 cut(s) 368
MluCI AATT 9 cut(s) 175, 331, 409, 664, 727, 744, 815, 895, 907
MmeI TCCRAC 1 cut(s) 949
MnlI CCTC 6 cut(s) 22, 35, 177, 194, 682, 820
MseI TTAA 4 cut(s) 195, 477, 612, 747
MslI CAYNNNNRTG 1 cut(s) 396
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 753
MwoI GCNNNNNNNGC 3 cut(s) 53, 247, 292
NcoI CCATGG 1 cut(s) 94
NdeII GATC 4 cut(s) 368, 532, 655, 940
NlaIII CATG 5 cut(s) 62, 98, 439, 533, 700
NmuCI GTSAC 2 cut(s) 776, 789
NruI TCGCGA 1 cut(s) 753
PagI TCATGA 1 cut(s) 529
PciSI GCTCTTC 2 cut(s) 146, 219
PfeI GAWTC 1 cut(s) 763
PkrI GCNGC 3 cut(s) 158, 592, 837
PshBI ATTAAT 2 cut(s) 612, 747
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PstI CTGCAG 1 cut(s) 161
PsuI RGATCY 1 cut(s) 368
RruI TCGCGA 1 cut(s) 753
RsaI GTAC 3 cut(s) 466, 484, 567
RsaNI GTAC 3 cut(s) 465, 483, 566
RseI CAYNNNNRTG 1 cut(s) 396
SapI GCTCTTC 2 cut(s) 146, 219
SaqAI TTAA 4 cut(s) 195, 477, 612, 747
SatI GCNGC 3 cut(s) 157, 591, 836
Sau3AI GATC 4 cut(s) 368, 532, 655, 940
ScaI AGTACT 1 cut(s) 567
ScrFI CCNGG 1 cut(s) 291
SfaNI GCATC 1 cut(s) 449
SfcI CTRYAG 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 9 cut(s) 175, 331, 409, 664, 727, 744, 815, 895, 907
SsiI CCGC 1 cut(s) 810
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 3 cut(s) 464, 565, 776
TaiI ACGT 1 cut(s) 791
TaqII GACCGA 1 cut(s) 369
TasI AATT 9 cut(s) 175, 331, 409, 664, 727, 744, 815, 895, 907
TatI WGTACW 1 cut(s) 565
TfiI GAWTC 1 cut(s) 763
Tru1I TTAA 4 cut(s) 195, 477, 612, 747
Tru9I TTAA 4 cut(s) 195, 477, 612, 747
TscAI CASTG 3 cut(s) 548, 553, 781
TseFI GTSAC 2 cut(s) 776, 789
TseI GCWGC 3 cut(s) 156, 590, 835
Tsp45I GTSAC 2 cut(s) 776, 789
TspDTI ATGAA 7 cut(s) 75, 234, 321, 484, 624, 713, 819
TspRI CASTG 3 cut(s) 548, 553, 781
VspI ATTAAT 2 cut(s) 612, 747
XapI RAATTY 5 cut(s) 331, 409, 664, 727, 895
ZrmI AGTACT 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.