pycom02g07060
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0016234
Physical Location & Seq
Forward (+)
4940102 .. 4941434
1333 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g07060.1

Sequence Viewer

Length: 984 bp
ATGGGGAGAAGCCCTTGTTGTGCAAAGGAGGGCATGAACAGAGGTGCTTGGACTGCCCATGAAGACAAAGTTCTCACTGAATACATCAAGCTCCATGGAGAAGGCAGATGGAGAAACCTTCCCAAAAAAGCAGGTTTAAACAGATGTGGGAAGAGCTGCAGGCTTAGGTGGTTGAATTATCTGAGGCCAGACATTAAGAGAGGTAACATAACTCCAGATGAAGAAGAGCTTATCATTAGGCTTCACAAACTTTTGGGGAACAGATGGTCTCTAATAGCTGGTAGGCTTCCAGGGCGAACAGACAATGAAATAAAGAACTACTGGAACACAAATTTAGGTAAAAAAGTTCATGACCACCAACAAGGATCCGCTTCAGATCTCAAGCACCGCAAAAATGGTGAACCAAATTCCAAGAAAGCAAAAATGATGGACATGGCAGCACCATCATCCCATGTTGTCCGTACCAAAGCTGCTAAGTGTACCAAAGTTTTTATCAACCCACACCCACACAAAGTCCCACTTGGTCATGATCATCAACATTGCACTGAGGAAACAAATGCAGGGGGACTAATGTTTGGTGACAAGCCAGCAGCTATGGATGATGACCACATTAATAGGACACGGTCATTTTCTTCGTTCTCTAATATCAATGCTGATCAAGAAAATGTAACCTCGGATTTTTTGGCGGATTTTGACATGGATGAGATTAGCTTAGCCAATCTTCTGAATTCGGATTTTCCGGAGATTAATCACGATGAATTGAATCATAATGGCAGTGACAATGGTATGTCACATTGTGTAGATGAAACCGCTCGATTTTTTTCAGAAGGAATGCTGCAACATTGGAAGAATGGCGGTAGCGACGATGGTGATGATCAAGTTCAAGTTCAGCCAAATTTGGTTCTCAATTTCCATTCCTACAATTCTTTTCTGGGTTCTGACCATCAAGGGGAAGAATGCCTTGGAGTTGGAGAGAGTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

328

Amino Acids

36.82

Weight (kDa)

6.44

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 3.5e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 3.9e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.7e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 114 8.9e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08390 FvH4_1g08390
malus_domestica MD02G1087900.v1.1 MD15G1215500.v1.1
prunus_persica Prupe.7G201600_v2.0.a1
pyrus_communis pycom02g07060 pycom15g19120
rosa_chinensis RchiOBHm_Chr2g0094491
rosa_laevigata RLG00000016495
rosa_multiflora Rmu_sc0004359.1_g000048
rosa_roxburghii Rroxscaffold_2G00147130
rosa_rugosa Rorug02G0044200
rosa_samantha Rh2BG092700 Rh2CG095200 Rh2DG091500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 122
AccBSI CCGCTC 1 cut(s) 812
AccIII TCCGGA 1 cut(s) 739
AciI CCGC 5 cut(s) 369, 388, 686, 810, 855
AclWI GGATC 2 cut(s) 360, 373
AcsI RAATTY 4 cut(s) 331, 406, 727, 895
AcuI CTGAAG 1 cut(s) 357
AdeI CACNNNGTG 1 cut(s) 797
AfaI GTAC 2 cut(s) 463, 481
AfiI CCNNNNNNNGG 1 cut(s) 949
AgsI TTSAA 3 cut(s) 175, 763, 884
AjnI CCWGG 1 cut(s) 289
AjuI GAANNNNNNNTTGG 2 cut(s) 945, 977
AluBI AGCT 7 cut(s) 91, 156, 229, 278, 470, 593, 711
AluI AGCT 7 cut(s) 91, 156, 229, 278, 470, 593, 711
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 2 cut(s) 360, 373
Aor13HI TCCGGA 1 cut(s) 739
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 5 cut(s) 156, 437, 470, 590, 835
ApoI RAATTY 4 cut(s) 331, 406, 727, 895
AseI ATTAAT 2 cut(s) 612, 747
AsuHPI GGTGA 3 cut(s) 410, 590, 881
BamHI GGATCC 1 cut(s) 365
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 5 cut(s) 143, 449, 457, 602, 822
BccI CCATC 6 cut(s) 102, 258, 421, 451, 860, 951
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 3 cut(s) 529, 655, 874
BcoDI GTCTC 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 157
BfuAI ACCTGC 1 cut(s) 122
BglII AGATCT 1 cut(s) 376
BisI GCNGC 5 cut(s) 157, 438, 471, 591, 836
BlpI GCTNAGC 1 cut(s) 712
BlsI GCNGC 5 cut(s) 158, 439, 472, 592, 837
Bme1390I CCNGG 1 cut(s) 291
BmiI GGNNCC 1 cut(s) 367
BmrFI CCNGG 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 164
Bpu1102I GCTNAGC 1 cut(s) 712
BpuEI CTTGAG 1 cut(s) 365
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 4 cut(s) 94, 290, 672, 961
BsaWI WCCGGW 1 cut(s) 739
Bsc4I CCNNNNNNNGG 1 cut(s) 949
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 538
BseAI TCCGGA 1 cut(s) 739
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 4 cut(s) 94, 290, 672, 961
BseGI GGATG 3 cut(s) 446, 604, 706
BseLI CCNNNNNNNGG 1 cut(s) 949
BseMI GCAATG 1 cut(s) 538
BseMII CTCAG 2 cut(s) 173, 537
BseNI ACTGG 1 cut(s) 326
BseXI GCAGC 5 cut(s) 143, 449, 457, 602, 822
BshFI GGCC 1 cut(s) 187
BsiSI CCGG 1 cut(s) 740
BslFI GGGAC 2 cut(s) 500, 579
BslI CCNNNNNNNGG 1 cut(s) 949
BsmAI GTCTC 1 cut(s) 273
BsmFI GGGAC 2 cut(s) 500, 579
BsmI GAATGC 2 cut(s) 837, 962
BsnI GGCC 1 cut(s) 187
Bso31I GGTCTC 1 cut(s) 273
Bsp13I TCCGGA 1 cut(s) 739
Bsp143I GATC 5 cut(s) 365, 376, 529, 655, 874
Bsp1720I GCTNAGC 1 cut(s) 712
Bsp19I CCATGG 1 cut(s) 94
BspACI CCGC 5 cut(s) 369, 388, 686, 810, 855
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 2 cut(s) 174, 538
BspEI TCCGGA 1 cut(s) 739
BspHI TCATGA 2 cut(s) 349, 526
BspLI GGNNCC 1 cut(s) 367
BspMAI CTGCAG 1 cut(s) 161
BspMI ACCTGC 1 cut(s) 122
BspPI GGATC 2 cut(s) 360, 373
BspQI GCTCTTC 2 cut(s) 146, 219
BspTNI GGTCTC 1 cut(s) 273
BsrBI CCGCTC 1 cut(s) 812
BsrDI GCAATG 1 cut(s) 538
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 4 cut(s) 94, 290, 672, 961
BssMI GATC 5 cut(s) 365, 376, 529, 655, 874
BssT1I CCWWGG 2 cut(s) 94, 961
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 624
Bst6I CTCTTC 2 cut(s) 146, 219
BstC8I GCNNGC 2 cut(s) 161, 588
BstDEI CTNAG 5 cut(s) 164, 182, 474, 546, 712
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 3 cut(s) 446, 604, 706
BstKTI GATC 5 cut(s) 368, 379, 532, 658, 877
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 5 cut(s) 365, 376, 529, 655, 874
BstMWI GCNNNNNNNGC 2 cut(s) 53, 292
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 5 cut(s) 143, 449, 457, 602, 822
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 2 cut(s) 365, 376
BstYI RGATCY 2 cut(s) 365, 376
BsuRI GGCC 1 cut(s) 187
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 3 cut(s) 446, 604, 706
BtsI GCAGTG 1 cut(s) 781
BtsIMutI CAGTG 3 cut(s) 75, 543, 781
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 2 cut(s) 161, 588
CciI TCATGA 2 cut(s) 349, 526
Csp6I GTAC 2 cut(s) 462, 480
CviAII CATG 8 cut(s) 34, 59, 95, 350, 433, 452, 527, 697
CviQI GTAC 2 cut(s) 462, 480
DdeI CTNAG 5 cut(s) 164, 182, 474, 546, 712
DpnI GATC 5 cut(s) 367, 378, 531, 657, 876
DpnII GATC 5 cut(s) 365, 376, 529, 655, 874
DraI TTTAAA 1 cut(s) 138
DraIII CACNNNGTG 1 cut(s) 797
Eam1104I CTCTTC 2 cut(s) 146, 219
EarI CTCTTC 2 cut(s) 146, 219
EciI GGCGGA 1 cut(s) 701
Eco130I CCWWGG 2 cut(s) 94, 961
Eco31I GGTCTC 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 357
EcoRI GAATTC 1 cut(s) 727
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 2 cut(s) 94, 961
ErhI CCWWGG 2 cut(s) 94, 961
FaeI CATG 8 cut(s) 37, 62, 98, 353, 436, 455, 530, 700
FalI AAGNNNNNCTT 6 cut(s) 213, 245, 504, 536, 945, 977
FaqI GGGAC 2 cut(s) 500, 579
FatI CATG 8 cut(s) 33, 58, 94, 349, 432, 451, 526, 696
FbaI TGATCA 3 cut(s) 529, 655, 874
Fnu4HI GCNGC 5 cut(s) 157, 438, 471, 591, 836
FokI GGATG 3 cut(s) 433, 611, 713
Fsp4HI GCNGC 5 cut(s) 157, 438, 471, 591, 836
GluI GCNGC 5 cut(s) 157, 438, 471, 591, 836
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 740
Hin1II CATG 8 cut(s) 37, 62, 98, 353, 436, 455, 530, 700
HinfI GANTC 2 cut(s) 763, 976
HpaII CCGG 1 cut(s) 740
HphI GGTGA 3 cut(s) 410, 590, 881
Hpy166II GTNNAC 2 cut(s) 401, 480
Hpy188I TCNGA 7 cut(s) 183, 376, 676, 726, 733, 826, 940
Hpy188III TCNNGA 6 cut(s) 215, 350, 527, 659, 740, 752
Hpy8I GTNNAC 2 cut(s) 401, 480
Hpy99I CGWCG 1 cut(s) 866
HpyAV CCTTC 3 cut(s) 95, 128, 821
HpyCH4III ACNGT 1 cut(s) 624
HpyCH4V TGCA 5 cut(s) 23, 159, 543, 560, 838
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 292
HpyF3I CTNAG 5 cut(s) 164, 182, 474, 546, 712
Hsp92II CATG 8 cut(s) 37, 62, 98, 353, 436, 455, 530, 700
Kpn2I TCCGGA 1 cut(s) 739
Ksp22I TGATCA 3 cut(s) 529, 655, 874
Kzo9I GATC 5 cut(s) 365, 376, 529, 655, 874
LguI GCTCTTC 2 cut(s) 146, 219
LmnI GCTCC 1 cut(s) 96
Lsp1109I GCAGC 5 cut(s) 143, 449, 457, 602, 822
MaeIII GTNAC 5 cut(s) 203, 578, 667, 776, 789
MalI GATC 5 cut(s) 367, 378, 531, 657, 876
MbiI CCGCTC 1 cut(s) 812
MboI GATC 5 cut(s) 365, 376, 529, 655, 874
MboII GAAGA 8 cut(s) 74, 163, 233, 236, 624, 713, 859, 965
MflI RGATCY 2 cut(s) 365, 376
MluCI AATT 8 cut(s) 175, 331, 406, 727, 758, 895, 907, 922
MmeI TCCRAC 1 cut(s) 949
MnlI CCTC 6 cut(s) 22, 35, 177, 194, 541, 682
MroI TCCGGA 1 cut(s) 739
MseI TTAA 4 cut(s) 137, 195, 612, 747
MspI CCGG 1 cut(s) 740
MspR9I CCNGG 1 cut(s) 291
MssI GTTTAAAC 1 cut(s) 138
Mva1269I GAATGC 2 cut(s) 837, 962
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 2 cut(s) 53, 292
NcoI CCATGG 1 cut(s) 94
NdeII GATC 5 cut(s) 365, 376, 529, 655, 874
NlaIII CATG 8 cut(s) 37, 62, 98, 353, 436, 455, 530, 700
NlaIV GGNNCC 1 cut(s) 367
NmuCI GTSAC 3 cut(s) 578, 776, 789
PagI TCATGA 2 cut(s) 349, 526
PciSI GCTCTTC 2 cut(s) 146, 219
PctI GAATGC 2 cut(s) 837, 962
PfeI GAWTC 1 cut(s) 763
PflFI GACNNNGTC 1 cut(s) 622
PkrI GCNGC 5 cut(s) 158, 439, 472, 592, 837
PmeI GTTTAAAC 1 cut(s) 138
PshBI ATTAAT 2 cut(s) 612, 747
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 367
PstI CTGCAG 1 cut(s) 161
PsuI RGATCY 2 cut(s) 365, 376
PsyI GACNNNGTC 1 cut(s) 622
RsaI GTAC 2 cut(s) 463, 481
RsaNI GTAC 2 cut(s) 462, 480
SapI GCTCTTC 2 cut(s) 146, 219
SaqAI TTAA 4 cut(s) 137, 195, 612, 747
SatI GCNGC 5 cut(s) 157, 438, 471, 591, 836
Sau3AI GATC 5 cut(s) 365, 376, 529, 655, 874
ScrFI CCNGG 1 cut(s) 291
SfcI CTRYAG 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 8 cut(s) 175, 331, 406, 727, 758, 895, 907, 922
SsiI CCGC 5 cut(s) 369, 388, 686, 810, 855
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 2 cut(s) 94, 961
TaaI ACNGT 1 cut(s) 624
TaqI TCGA 1 cut(s) 814
TasI AATT 8 cut(s) 175, 331, 406, 727, 758, 895, 907, 922
TfiI GAWTC 1 cut(s) 763
Tru1I TTAA 4 cut(s) 137, 195, 612, 747
Tru9I TTAA 4 cut(s) 137, 195, 612, 747
TscAI CASTG 3 cut(s) 82, 550, 781
TseFI GTSAC 3 cut(s) 578, 776, 789
TseI GCWGC 5 cut(s) 156, 437, 470, 590, 835
Tsp45I GTSAC 3 cut(s) 578, 776, 789
TspDTI ATGAA 7 cut(s) 50, 75, 234, 321, 338, 771, 819
TspGWI ACGGA 1 cut(s) 449
TspRI CASTG 3 cut(s) 82, 550, 781
Tth111I GACNNNGTC 1 cut(s) 622
VspI ATTAAT 2 cut(s) 612, 747
XapI RAATTY 4 cut(s) 331, 406, 727, 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.