Rh2DG091500
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0016234
Physical Location & Seq
Forward (+)
7109695 .. 7113486
3792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG091500.1

Sequence Viewer

Length: 570 bp
ATGGGGAGAAGCCCTTGTTGTGCTAAGGAGGGCTTGAATAGAGGTGCATGGACTGCTCTCGAAGATAGAGATCTGACTGAATACATCAAAGTTCATGGCGAAGGAAGATGGAGAAACCTCCCCCAAAAAGCAGGACTGAAAAGGTGTGGGAAGAGCTGCAGGCTTAGGTGGTTGAACTATTTGAGACCAGACATTAAGAGAGGCAACATATCACCTGATGAAGAAGAGCTCATCGTCAAGCTTCACAAGCTCTTGGGCAACAGATGGTCTCTAATAGCGGGTAGGCTACCAGGGCGAACAGACAATGAAATAAAAAACTACTGGAACACCAATCTGAGCAAAAGAATTCAAGACCAAGAAGCTCGCTCATCGCCCTCATCAGCTGGTGGTGAAGAACCAAAATCAAAAAAGGCCAAGAATGTTATGGCCTCGCCATTTTCCCATAATGTGATAAGAACAAAAGCTGCCAAGTGCAACAAAGTTTTCATCAACCCACAGTTACCACACAAAGGGTTGTTCCAGATGGATGATCACAGGCCTATGGATCATCATCAACATCTTGTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

189

Amino Acids

21.65

Weight (kDa)

9.83

Isoelectric Point (pI)

60.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 5.4e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.4e-08 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.4e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 119 2.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08390 FvH4_1g08390
malus_domestica MD02G1087900.v1.1 MD15G1215500.v1.1
prunus_persica Prupe.7G201600_v2.0.a1
pyrus_communis pycom02g07060 pycom15g19120
rosa_chinensis RchiOBHm_Chr2g0094491
rosa_laevigata RLG00000016495
rosa_multiflora Rmu_sc0004359.1_g000048
rosa_roxburghii Rroxscaffold_2G00147130
rosa_rugosa Rorug02G0044200
rosa_samantha Rh2BG092700 Rh2CG095200 Rh2DG091500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 278
AclWI GGATC 1 cut(s) 552
AcsI RAATTY 1 cut(s) 345
AfiI CCNNNNNNNGG 1 cut(s) 509
AgsI TTSAA 3 cut(s) 37, 175, 350
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 7 cut(s) 156, 229, 241, 250, 362, 383, 464
AluI AGCT 7 cut(s) 156, 229, 241, 250, 362, 383, 464
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 2 cut(s) 178, 273
AlwI GGATC 1 cut(s) 552
AoxI GGCC 3 cut(s) 411, 426, 536
ApeKI GCWGC 2 cut(s) 156, 464
ApoI RAATTY 1 cut(s) 345
AsuHPI GGTGA 2 cut(s) 204, 401
BanII GRGCYC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 143, 451
BccI CCATC 3 cut(s) 102, 258, 517
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 2 cut(s) 178, 273
BfmI CTRYAG 1 cut(s) 157
BglII AGATCT 1 cut(s) 70
BisI GCNGC 2 cut(s) 157, 465
BlsI GCNGC 2 cut(s) 158, 466
Bme1390I CCNGG 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 291
Bpu10I CCTNAGC 2 cut(s) 24, 164
BsaBI GATNNNNATC 2 cut(s) 69, 549
BsaI GGTCTC 2 cut(s) 178, 273
BsaJI CCNNGG 1 cut(s) 290
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse1I ACTGG 1 cut(s) 326
Bse8I GATNNNNATC 2 cut(s) 69, 549
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 1 cut(s) 532
BseJI GATNNNNATC 2 cut(s) 69, 549
BseLI CCNNNNNNNGG 1 cut(s) 509
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 1 cut(s) 326
BseXI GCAGC 2 cut(s) 143, 451
BshFI GGCC 3 cut(s) 413, 428, 538
BsiHKAI GWGCWC 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 509
BsmAI GTCTC 2 cut(s) 178, 273
BsnI GGCC 3 cut(s) 413, 428, 538
Bso31I GGTCTC 2 cut(s) 178, 273
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 3 cut(s) 70, 529, 544
BspACI CCGC 1 cut(s) 278
BspANI GGCC 3 cut(s) 413, 428, 538
BspCNI CTCAG 1 cut(s) 327
BspMAI CTGCAG 1 cut(s) 161
BspPI GGATC 1 cut(s) 552
BspQI GCTCTTC 2 cut(s) 146, 219
BspTNI GGTCTC 2 cut(s) 178, 273
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 1 cut(s) 290
BssMI GATC 3 cut(s) 70, 529, 544
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 498
Bst6I CTCTTC 2 cut(s) 146, 219
BstAPI GCANNNNNTGC 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 161, 364
BstDEI CTNAG 3 cut(s) 24, 164, 335
BstF5I GGATG 1 cut(s) 532
BstKTI GATC 3 cut(s) 73, 532, 547
BstMAI GTCTC 2 cut(s) 178, 273
BstMBI GATC 3 cut(s) 70, 529, 544
BstMWI GCNNNNNNNGC 3 cut(s) 53, 247, 292
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 2 cut(s) 143, 451
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 3 cut(s) 413, 428, 538
BtgZI GCGATG 1 cut(s) 354
BtsCI GGATG 1 cut(s) 532
Cac8I GCNNGC 2 cut(s) 161, 364
CviAII CATG 2 cut(s) 48, 95
DdeI CTNAG 3 cut(s) 24, 164, 335
DpnI GATC 3 cut(s) 72, 531, 546
DpnII GATC 3 cut(s) 70, 529, 544
Eam1104I CTCTTC 2 cut(s) 146, 219
EarI CTCTTC 2 cut(s) 146, 219
Ecl136II GAGCTC 1 cut(s) 229
Eco147I AGGCCT 1 cut(s) 538
Eco24I GRGCYC 1 cut(s) 231
Eco31I GGTCTC 2 cut(s) 178, 273
Eco53kI GAGCTC 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 231
FaeI CATG 2 cut(s) 51, 98
FaiI YATR 6 cut(s) 49, 96, 209, 425, 444, 542
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FatI CATG 2 cut(s) 47, 94
FauI CCCGC 1 cut(s) 271
FbaI TGATCA 1 cut(s) 529
Fnu4HI GCNGC 2 cut(s) 157, 465
FokI GGATG 1 cut(s) 539
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 2 cut(s) 157, 465
GluI GCNGC 2 cut(s) 157, 465
HaeIII GGCC 3 cut(s) 413, 428, 538
Hin1II CATG 2 cut(s) 51, 98
HindIII AAGCTT 1 cut(s) 239
HphI GGTGA 2 cut(s) 204, 401
Hpy188I TCNGA 2 cut(s) 75, 336
Hpy188III TCNNGA 3 cut(s) 59, 350, 520
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 498
HpyCH4V TGCA 3 cut(s) 47, 159, 474
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 247, 292
HpyF3I CTNAG 3 cut(s) 24, 164, 335
Hsp92II CATG 2 cut(s) 51, 98
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 3 cut(s) 70, 529, 544
LguI GCTCTTC 2 cut(s) 146, 219
Lsp1109I GCAGC 2 cut(s) 143, 451
MaeIII GTNAC 1 cut(s) 498
MalI GATC 3 cut(s) 72, 531, 546
MboI GATC 3 cut(s) 70, 529, 544
MboII GAAGA 6 cut(s) 74, 117, 163, 233, 236, 404
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 1 cut(s) 345
MnlI CCTC 6 cut(s) 22, 35, 128, 194, 385, 439
MseI TTAA 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 3 cut(s) 53, 247, 292
NdeII GATC 3 cut(s) 70, 529, 544
NlaIII CATG 2 cut(s) 51, 98
PceI AGGCCT 1 cut(s) 538
PciSI GCTCTTC 2 cut(s) 146, 219
PkrI GCNGC 2 cut(s) 158, 466
Psp124BI GAGCTC 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PstI CTGCAG 1 cut(s) 161
PsuI RGATCY 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 383
SacI GAGCTC 1 cut(s) 231
SapI GCTCTTC 2 cut(s) 146, 219
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 2 cut(s) 157, 465
Sau3AI GATC 3 cut(s) 70, 529, 544
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 231
SfcI CTRYAG 1 cut(s) 157
Sse9I AATT 1 cut(s) 345
SseBI AGGCCT 1 cut(s) 538
SsiI CCGC 1 cut(s) 278
SstI GAGCTC 1 cut(s) 231
StuI AGGCCT 1 cut(s) 538
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 498
TaqI TCGA 1 cut(s) 60
TasI AATT 1 cut(s) 345
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseI GCWGC 2 cut(s) 156, 464
TspDTI ATGAA 4 cut(s) 83, 234, 321, 475
XapI RAATTY 1 cut(s) 345
XcmI CCANNNNNNNNNTGG 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.