RLG00000016495
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016234
Physical Location & Seq
Forward (+)
7099224 .. 7100336
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016495

Sequence Viewer

Length: 891 bp
ATGGGGAGAAGCCCTTGTTGTGCTAAGGAGGGCTTGAATAGAGGTGCATGGACTGCTCTCGAAGATAGAGTTCTGACTGAATACATCAAAGTCCATGGCGAAGGAAGATGGAGAAACCTCCCCAAAAAAGCAGGACTGAAAAGGTGTGGGAAGAGCTGCAGGCTTAGGTGGTTGAACTATTTAAGACCAGACATTAAGAGAGGCAACATATCACCTGATGAAGAAGAGCTCATCGTCAAGCTTCACAAGCTCTTGGGCAACAGATGGTCTCTAATAGCGGGTAGGCTACCAGGGCGAACAGACAATGAAATAAAAAACTACTGGAACACCAATCTGAGCAAAAGAATTCAAGACCAAGAAGCTCGCTCCTCGCCCTCATCAGCTGGTGGTGAAGAACCAAAATCAAAAAAGGCCAAGAATGTTATGGCCTCGCCATTTTCCCATAATGTGATAAGAACAAAAGCTGCCAAGTGCAACAAAGTTTTCATCAACCCACAGTTACCACACAGAGGGTTGTTCCAGATGGATGATCGCAGGCCTATGGATCATCATCAACATGTAGATCATCGACCTGATGAGAATGGGTTGTCATCGTCGCAATCTTTGTTGGAAACCTCGTCTGCATCAGAGTTCCTGGTGGATTTCGGCATGAATTCCGACCTTTGCCTGGCCAGTCTCCTCAGTTCGAAATTTTCAAGTGGTGATCACTTGTTCTCTGAAGAAATGCAGCTGCAAGAACAATATTGGAGTGGTAATGTTGGTAGTGGTGAGGATTGTGTTGTTGACGATCAACTTCAACCAAATACGGTCCTCAATTTCCAGTCATTGAATTGTTTTCTCGATGCTGATGCTAACCAAGGAGACTGGCTCGAACTTGCAGAGAGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

297

Amino Acids

33.37

Weight (kDa)

7.1

Isoelectric Point (pI)

54.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 9.1e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.2e-08 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 2.9e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 119 4.4e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08390 FvH4_1g08390
malus_domestica MD02G1087900.v1.1 MD15G1215500.v1.1
prunus_persica Prupe.7G201600_v2.0.a1
pyrus_communis pycom02g07060 pycom15g19120
rosa_chinensis RchiOBHm_Chr2g0094491
rosa_laevigata RLG00000016495
rosa_multiflora Rmu_sc0004359.1_g000048
rosa_roxburghii Rroxscaffold_2G00147130
rosa_rugosa Rorug02G0044200
rosa_samantha Rh2BG092700 Rh2CG095200 Rh2DG091500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 278
AclWI GGATC 1 cut(s) 552
AcoI YGGCCR 1 cut(s) 669
AcsI RAATTY 3 cut(s) 345, 652, 689
AcuI CTGAAG 1 cut(s) 738
AfiI CCNNNNNNNGG 2 cut(s) 509, 667
AflIII ACRYGT 1 cut(s) 556
AgsI TTSAA 6 cut(s) 37, 175, 350, 696, 797, 829
AjnI CCWGG 3 cut(s) 289, 633, 666
AluBI AGCT 8 cut(s) 156, 229, 241, 250, 362, 383, 464, 730
AluI AGCT 8 cut(s) 156, 229, 241, 250, 362, 383, 464, 730
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 3 cut(s) 273, 680, 855
AlwI GGATC 1 cut(s) 552
AoxI GGCC 4 cut(s) 411, 426, 536, 669
ApeKI GCWGC 4 cut(s) 156, 464, 727, 730
ApoI RAATTY 3 cut(s) 345, 652, 689
AspS9I GGNCC 1 cut(s) 808
AsuHPI GGTGA 4 cut(s) 204, 401, 713, 779
AsuII TTCGAA 1 cut(s) 686
AvaII GGWCC 1 cut(s) 808
BalI TGGCCA 1 cut(s) 671
BanII GRGCYC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 4 cut(s) 143, 451, 717, 739
BccI CCATC 3 cut(s) 102, 258, 517
BcgI CGANNNNNNTGC 2 cut(s) 830, 864
BciT130I CCWGG 3 cut(s) 291, 635, 668
BclI TGATCA 1 cut(s) 703
BcoDI GTCTC 3 cut(s) 273, 680, 855
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 4 cut(s) 157, 465, 728, 731
BlsI GCNGC 4 cut(s) 158, 466, 729, 732
Bme1390I CCNGG 3 cut(s) 291, 635, 668
Bme18I GGWCC 1 cut(s) 808
BmgT120I GGNCC 1 cut(s) 808
BmrFI CCNGG 3 cut(s) 291, 635, 668
BmsI GCATC 3 cut(s) 632, 832, 838
BplI GAGNNNNNCTC 2 cut(s) 852, 884
Bpu10I CCTNAGC 2 cut(s) 24, 164
Bpu14I TTCGAA 1 cut(s) 686
BsaBI GATNNNNATC 1 cut(s) 549
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 3 cut(s) 94, 290, 856
Bsc4I CCNNNNNNNGG 2 cut(s) 509, 667
Bse1I ACTGG 4 cut(s) 326, 672, 820, 869
Bse8I GATNNNNATC 1 cut(s) 549
BseBI CCWGG 3 cut(s) 291, 635, 668
BseDI CCNNGG 3 cut(s) 94, 290, 856
BseGI GGATG 1 cut(s) 532
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 2 cut(s) 509, 667
BseMII CTCAG 2 cut(s) 326, 694
BseNI ACTGG 4 cut(s) 326, 672, 820, 869
BseRI GAGGAG 2 cut(s) 358, 668
BseXI GCAGC 4 cut(s) 143, 451, 717, 739
BshFI GGCC 4 cut(s) 413, 428, 538, 671
BsiHKAI GWGCWC 1 cut(s) 231
BslI CCNNNNNNNGG 2 cut(s) 509, 667
BsmAI GTCTC 3 cut(s) 273, 680, 855
BsnI GGCC 4 cut(s) 413, 428, 538, 671
Bso31I GGTCTC 1 cut(s) 273
Bsp119I TTCGAA 1 cut(s) 686
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 5 cut(s) 529, 544, 562, 703, 787
Bsp19I CCATGG 1 cut(s) 94
BspACI CCGC 1 cut(s) 278
BspANI GGCC 4 cut(s) 413, 428, 538, 671
BspCNI CTCAG 2 cut(s) 327, 693
BspMAI CTGCAG 1 cut(s) 161
BspPI GGATC 1 cut(s) 552
BspQI GCTCTTC 2 cut(s) 146, 219
BspT104I TTCGAA 1 cut(s) 686
BspTNI GGTCTC 1 cut(s) 273
BsrI ACTGG 4 cut(s) 326, 672, 820, 869
BssECI CCNNGG 3 cut(s) 94, 290, 856
BssMI GATC 5 cut(s) 529, 544, 562, 703, 787
BssT1I CCWWGG 2 cut(s) 94, 856
Bst2UI CCWGG 3 cut(s) 291, 635, 668
Bst4CI ACNGT 2 cut(s) 498, 808
Bst6I CTCTTC 2 cut(s) 146, 219
BstAPI GCANNNNNTGC 1 cut(s) 53
BstBI TTCGAA 1 cut(s) 686
BstC8I GCNNGC 3 cut(s) 161, 364, 536
BstDEI CTNAG 4 cut(s) 24, 164, 335, 680
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 1 cut(s) 532
BstKTI GATC 5 cut(s) 532, 547, 565, 706, 790
BstMAI GTCTC 3 cut(s) 273, 680, 855
BstMBI GATC 5 cut(s) 529, 544, 562, 703, 787
BstMWI GCNNNNNNNGC 3 cut(s) 53, 247, 292
BstNI CCWGG 3 cut(s) 291, 635, 668
BstNSI RCATGY 1 cut(s) 560
BstSCI CCNGG 3 cut(s) 289, 633, 666
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 4 cut(s) 143, 451, 717, 739
BsuRI GGCC 4 cut(s) 413, 428, 538, 671
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 532
Cac8I GCNNGC 3 cut(s) 161, 364, 536
Cfr13I GGNCC 1 cut(s) 808
CviAII CATG 4 cut(s) 48, 95, 557, 649
DdeI CTNAG 4 cut(s) 24, 164, 335, 680
DpnI GATC 5 cut(s) 531, 546, 564, 705, 789
DpnII GATC 5 cut(s) 529, 544, 562, 703, 787
EaeI YGGCCR 1 cut(s) 669
Eam1104I CTCTTC 2 cut(s) 146, 219
EarI CTCTTC 2 cut(s) 146, 219
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 2 cut(s) 94, 856
Eco147I AGGCCT 1 cut(s) 538
Eco24I GRGCYC 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 808
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 738
EcoICRI GAGCTC 1 cut(s) 229
EcoRI GAATTC 2 cut(s) 345, 652
EcoRII CCWGG 3 cut(s) 289, 633, 666
EcoT14I CCWWGG 2 cut(s) 94, 856
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 2 cut(s) 94, 856
FaeI CATG 4 cut(s) 51, 98, 560, 652
FaiI YATR 8 cut(s) 49, 96, 209, 425, 444, 542, 558, 650
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FatI CATG 4 cut(s) 47, 94, 556, 648
FauI CCCGC 1 cut(s) 271
FbaI TGATCA 1 cut(s) 703
Fnu4HI GCNGC 4 cut(s) 157, 465, 728, 731
FokI GGATG 1 cut(s) 539
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 4 cut(s) 157, 465, 728, 731
GluI GCNGC 4 cut(s) 157, 465, 728, 731
HaeIII GGCC 4 cut(s) 413, 428, 538, 671
Hin1II CATG 4 cut(s) 51, 98, 560, 652
HincII GTYRAC 1 cut(s) 784
HindII GTYRAC 1 cut(s) 784
HindIII AAGCTT 1 cut(s) 239
HphI GGTGA 4 cut(s) 204, 401, 713, 779
Hpy166II GTNNAC 1 cut(s) 784
Hpy188I TCNGA 5 cut(s) 75, 336, 628, 658, 718
Hpy188III TCNNGA 4 cut(s) 59, 350, 520, 839
Hpy8I GTNNAC 1 cut(s) 784
Hpy99I CGWCG 1 cut(s) 598
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 2 cut(s) 498, 808
HpyCH4V TGCA 7 cut(s) 47, 159, 474, 623, 727, 733, 878
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 247, 292
HpyF3I CTNAG 4 cut(s) 24, 164, 335, 680
Hsp92II CATG 4 cut(s) 51, 98, 560, 652
Ksp22I TGATCA 1 cut(s) 703
Kzo9I GATC 5 cut(s) 529, 544, 562, 703, 787
LguI GCTCTTC 2 cut(s) 146, 219
LmnI GCTCC 1 cut(s) 371
Lsp1109I GCAGC 4 cut(s) 143, 451, 717, 739
LweI GCATC 3 cut(s) 632, 832, 838
MaeIII GTNAC 1 cut(s) 498
MalI GATC 5 cut(s) 531, 546, 564, 705, 789
MboI GATC 5 cut(s) 529, 544, 562, 703, 787
MboII GAAGA 7 cut(s) 74, 117, 163, 233, 236, 404, 731
MhlI GDGCHC 1 cut(s) 231
MlsI TGGCCA 1 cut(s) 671
MluCI AATT 5 cut(s) 345, 652, 689, 814, 829
MluNI TGGCCA 1 cut(s) 671
MmeI TCCRAC 2 cut(s) 588, 681
Mox20I TGGCCA 1 cut(s) 671
MscI TGGCCA 1 cut(s) 671
MseI TTAA 2 cut(s) 182, 195
MslI CAYNNNNRTG 1 cut(s) 555
Msp20I TGGCCA 1 cut(s) 671
MspA1I CMGCKG 2 cut(s) 383, 730
MspR9I CCNGG 3 cut(s) 291, 635, 668
MvaI CCWGG 3 cut(s) 291, 635, 668
MwoI GCNNNNNNNGC 3 cut(s) 53, 247, 292
NcoI CCATGG 1 cut(s) 94
NdeII GATC 5 cut(s) 529, 544, 562, 703, 787
NlaIII CATG 4 cut(s) 51, 98, 560, 652
NspI RCATGY 1 cut(s) 560
NspV TTCGAA 1 cut(s) 686
PceI AGGCCT 1 cut(s) 538
PciI ACATGT 1 cut(s) 556
PciSI GCTCTTC 2 cut(s) 146, 219
PkrI GCNGC 4 cut(s) 158, 466, 729, 732
PscI ACATGT 1 cut(s) 556
Psp124BI GAGCTC 1 cut(s) 231
Psp6I CCWGG 3 cut(s) 289, 633, 666
PspGI CCWGG 3 cut(s) 289, 633, 666
PspPI GGNCC 1 cut(s) 808
PstI CTGCAG 1 cut(s) 161
PvuII CAGCTG 2 cut(s) 383, 730
RseI CAYNNNNRTG 1 cut(s) 555
SacI GAGCTC 1 cut(s) 231
SapI GCTCTTC 2 cut(s) 146, 219
SaqAI TTAA 2 cut(s) 182, 195
SatI GCNGC 4 cut(s) 157, 465, 728, 731
Sau3AI GATC 5 cut(s) 529, 544, 562, 703, 787
Sau96I GGNCC 1 cut(s) 808
ScrFI CCNGG 3 cut(s) 291, 635, 668
SduI GDGCHC 1 cut(s) 231
SfaNI GCATC 3 cut(s) 632, 832, 838
SfcI CTRYAG 1 cut(s) 157
SfuI TTCGAA 1 cut(s) 686
SinI GGWCC 1 cut(s) 808
SmiMI CAYNNNNRTG 1 cut(s) 555
Sse9I AATT 5 cut(s) 345, 652, 689, 814, 829
SseBI AGGCCT 1 cut(s) 538
SsiI CCGC 1 cut(s) 278
SspI AATATT 1 cut(s) 743
SstI GAGCTC 1 cut(s) 231
StuI AGGCCT 1 cut(s) 538
StyD4I CCNGG 3 cut(s) 289, 633, 666
StyI CCWWGG 2 cut(s) 94, 856
TaaI ACNGT 2 cut(s) 498, 808
TaqI TCGA 5 cut(s) 60, 568, 686, 840, 870
TasI AATT 5 cut(s) 345, 652, 689, 814, 829
Tru1I TTAA 2 cut(s) 182, 195
Tru9I TTAA 2 cut(s) 182, 195
TseI GCWGC 4 cut(s) 156, 464, 727, 730
TspDTI ATGAA 4 cut(s) 234, 321, 475, 665
VpaK11BI GGWCC 1 cut(s) 808
XapI RAATTY 3 cut(s) 345, 652, 689
XceI RCATGY 1 cut(s) 560
XcmI CCANNNNNNNNNTGG 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.