MD02G1087900.v1.1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0016234
Physical Location & Seq
Forward (+)
6945318 .. 6947012
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1087900.v1.1.491

Sequence Viewer

Length: 987 bp
ATGGGGAGAAGCCCTTGTTGTGCAAAGGAGGGCATGAACAGAGGTGCTTGGACTGCCCATGAAGACAAAGTTCTCACTGAATACATCAAGCTCCATGGAGAAGGCAGATGGAGAAACCTTCCCAAAAATGCAGGTTTAAACAGATGTGGGAAGAGCTGCAGGCTTAGGTGGTTGAATTATCTGAGGCCAGACATTAAGAGAGGTAACATATCTCCAGATGAAGAAGAGCTTATCATTAGGCTTCACAAGCTTTTGGGGAACCGATGGTCTCTAATAGCTGGTAGGCTTCCAGGGCGAACAGACAATGAAATAAAGAACTACTGGAACACAAATTTAGGTAAAAAAGTTCATGACCACCAACAACAAGGATCTGCTTCAGATCTCAAGCACCACAAAAATGGTGAACCAAATTCCAAGAAAGCAAAAATGATGGACATGGCAACACCATCATCCCATGTTGTCCGTACCAAAGCTGCTAAGTGTACCAAAGTTTTTATCAACCCACACCCACACAAAGTCCCACTTGGTCATAATCATCAACATTACACTGAGGAAACAAATGCAGGGGGACTAATGTTTGATGACAAGCCAGCAGCTATGGATGATGACCACATTAATAGGACACGGTCATTTTCTTCATTCTCTAATATCAATGCTGATCAAGAGAATTCAACCTCGGATTTTTTGGTGGATTTTGACATGGATGAGATTAGCTTAGCCAATCTTCTGAACTCGGATTTTCCGGAGATTAACCACGACGACTTGAATCATATTAGCAGTGACAATGTTATGTCACGTTGTGTAGATGAAACTGCTCAATTTTTTTCAGAAGGAATGCTGCAACATTGGAAGAATGGTGATAGCGACAATGGTGATGATCGAGTTCAAGTTCAGCCAAATTTTATTCTCAATTTCCATTCCTTCAATTCTTTTCTGGGTTCTGATCATCAAGGGGAAGAATGCCTTGGAGTTGGAAAGAGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

329

Amino Acids

37.16

Weight (kDa)

6.43

Isoelectric Point (pI)

46.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 6.2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 1.8e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 4e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 114 1.8e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08390 FvH4_1g08390
malus_domestica MD02G1087900.v1.1 MD15G1215500.v1.1
prunus_persica Prupe.7G201600_v2.0.a1
pyrus_communis pycom02g07060 pycom15g19120
rosa_chinensis RchiOBHm_Chr2g0094491
rosa_laevigata RLG00000016495
rosa_multiflora Rmu_sc0004359.1_g000048
rosa_roxburghii Rroxscaffold_2G00147130
rosa_rugosa Rorug02G0044200
rosa_samantha Rh2BG092700 Rh2CG095200 Rh2DG091500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 122
AccIII TCCGGA 1 cut(s) 742
AclWI GGATC 1 cut(s) 376
AcsI RAATTY 4 cut(s) 331, 409, 667, 898
AcuI CTGAAG 1 cut(s) 360
AdeI CACNNNGTG 1 cut(s) 800
AfaI GTAC 2 cut(s) 466, 484
AgsI TTSAA 5 cut(s) 175, 672, 766, 887, 925
AjnI CCWGG 1 cut(s) 289
AjuI GAANNNNNNNTTGG 2 cut(s) 948, 980
AluBI AGCT 8 cut(s) 91, 156, 229, 250, 278, 473, 596, 714
AluI AGCT 8 cut(s) 91, 156, 229, 250, 278, 473, 596, 714
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 1 cut(s) 376
Aor13HI TCCGGA 1 cut(s) 742
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 4 cut(s) 156, 473, 593, 838
ApoI RAATTY 4 cut(s) 331, 409, 667, 898
AseI ATTAAT 1 cut(s) 615
AsuHPI GGTGA 3 cut(s) 413, 869, 884
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 4 cut(s) 143, 460, 605, 825
BccI CCATC 4 cut(s) 102, 258, 424, 454
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 2 cut(s) 658, 943
BcoDI GTCTC 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 157
BfuAI ACCTGC 1 cut(s) 122
BglII AGATCT 1 cut(s) 379
BisI GCNGC 4 cut(s) 157, 474, 594, 839
BlpI GCTNAGC 1 cut(s) 715
BlsI GCNGC 4 cut(s) 158, 475, 595, 840
Bme1390I CCNGG 1 cut(s) 291
BmiI GGNNCC 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 164
Bpu1102I GCTNAGC 1 cut(s) 715
BpuEI CTTGAG 1 cut(s) 368
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 4 cut(s) 94, 290, 675, 964
BsaWI WCCGGW 1 cut(s) 742
Bse1I ACTGG 1 cut(s) 326
BseAI TCCGGA 1 cut(s) 742
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 4 cut(s) 94, 290, 675, 964
BseGI GGATG 3 cut(s) 449, 607, 709
BseMII CTCAG 2 cut(s) 173, 540
BseNI ACTGG 1 cut(s) 326
BseXI GCAGC 4 cut(s) 143, 460, 605, 825
BshFI GGCC 1 cut(s) 187
BsiSI CCGG 1 cut(s) 743
BslFI GGGAC 2 cut(s) 503, 582
BsmAI GTCTC 1 cut(s) 273
BsmFI GGGAC 2 cut(s) 503, 582
BsmI GAATGC 2 cut(s) 840, 965
BsnI GGCC 1 cut(s) 187
Bso31I GGTCTC 1 cut(s) 273
Bsp13I TCCGGA 1 cut(s) 742
Bsp143I GATC 5 cut(s) 368, 379, 658, 877, 943
Bsp1720I GCTNAGC 1 cut(s) 715
Bsp19I CCATGG 1 cut(s) 94
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 2 cut(s) 174, 541
BspEI TCCGGA 1 cut(s) 742
BspHI TCATGA 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 260
BspMAI CTGCAG 1 cut(s) 161
BspMI ACCTGC 1 cut(s) 122
BspPI GGATC 1 cut(s) 376
BspQI GCTCTTC 2 cut(s) 146, 219
BspTNI GGTCTC 1 cut(s) 273
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 4 cut(s) 94, 290, 675, 964
BssMI GATC 5 cut(s) 368, 379, 658, 877, 943
BssT1I CCWWGG 2 cut(s) 94, 964
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 627
Bst6I CTCTTC 2 cut(s) 146, 219
BstC8I GCNNGC 2 cut(s) 161, 591
BstDEI CTNAG 5 cut(s) 164, 182, 477, 549, 715
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 3 cut(s) 449, 607, 709
BstKTI GATC 5 cut(s) 371, 382, 661, 880, 946
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 5 cut(s) 368, 379, 658, 877, 943
BstMWI GCNNNNNNNGC 3 cut(s) 53, 247, 292
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 4 cut(s) 143, 460, 605, 825
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 2 cut(s) 368, 379
BstXI CCANNNNNNTGG 1 cut(s) 398
BstYI RGATCY 2 cut(s) 368, 379
BsuRI GGCC 1 cut(s) 187
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 3 cut(s) 449, 607, 709
BtsI GCAGTG 1 cut(s) 784
BtsIMutI CAGTG 3 cut(s) 75, 546, 784
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 2 cut(s) 161, 591
CciI TCATGA 1 cut(s) 349
Csp6I GTAC 2 cut(s) 465, 483
CviAII CATG 7 cut(s) 34, 59, 95, 350, 436, 455, 700
CviQI GTAC 2 cut(s) 465, 483
DdeI CTNAG 5 cut(s) 164, 182, 477, 549, 715
DpnI GATC 5 cut(s) 370, 381, 660, 879, 945
DpnII GATC 5 cut(s) 368, 379, 658, 877, 943
DraI TTTAAA 1 cut(s) 138
DraIII CACNNNGTG 1 cut(s) 800
Eam1104I CTCTTC 2 cut(s) 146, 219
EarI CTCTTC 2 cut(s) 146, 219
Eco130I CCWWGG 2 cut(s) 94, 964
Eco31I GGTCTC 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 360
EcoRI GAATTC 1 cut(s) 667
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 2 cut(s) 94, 964
ErhI CCWWGG 2 cut(s) 94, 964
FaeI CATG 7 cut(s) 37, 62, 98, 353, 439, 458, 703
FalI AAGNNNNNCTT 6 cut(s) 213, 245, 507, 539, 948, 980
FaqI GGGAC 2 cut(s) 503, 582
FatI CATG 7 cut(s) 33, 58, 94, 349, 435, 454, 699
FbaI TGATCA 2 cut(s) 658, 943
Fnu4HI GCNGC 4 cut(s) 157, 474, 594, 839
FokI GGATG 3 cut(s) 436, 614, 716
Fsp4HI GCNGC 4 cut(s) 157, 474, 594, 839
GluI GCNGC 4 cut(s) 157, 474, 594, 839
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 743
Hin1II CATG 7 cut(s) 37, 62, 98, 353, 439, 458, 703
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 1 cut(s) 766
HpaII CCGG 1 cut(s) 743
HphI GGTGA 3 cut(s) 413, 869, 884
Hpy166II GTNNAC 2 cut(s) 404, 483
Hpy188I TCNGA 7 cut(s) 183, 379, 679, 729, 736, 829, 943
Hpy188III TCNNGA 4 cut(s) 215, 350, 662, 743
Hpy8I GTNNAC 2 cut(s) 404, 483
Hpy99I CGWCG 1 cut(s) 761
HpyAV CCTTC 4 cut(s) 95, 128, 824, 931
HpyCH4III ACNGT 1 cut(s) 627
HpyCH4IV ACGT 1 cut(s) 796
HpyCH4V TGCA 5 cut(s) 23, 131, 159, 563, 841
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 247, 292
HpyF3I CTNAG 5 cut(s) 164, 182, 477, 549, 715
HpySE526I ACGT 1 cut(s) 796
Hsp92II CATG 7 cut(s) 37, 62, 98, 353, 439, 458, 703
Kpn2I TCCGGA 1 cut(s) 742
Ksp22I TGATCA 2 cut(s) 658, 943
Kzo9I GATC 5 cut(s) 368, 379, 658, 877, 943
LguI GCTCTTC 2 cut(s) 146, 219
LmnI GCTCC 1 cut(s) 96
Lsp1109I GCAGC 4 cut(s) 143, 460, 605, 825
MaeII ACGT 1 cut(s) 796
MaeIII GTNAC 3 cut(s) 203, 779, 792
MalI GATC 5 cut(s) 370, 381, 660, 879, 945
MboI GATC 5 cut(s) 368, 379, 658, 877, 943
MboII GAAGA 8 cut(s) 74, 163, 233, 236, 627, 716, 862, 968
MflI RGATCY 2 cut(s) 368, 379
MluCI AATT 8 cut(s) 175, 331, 409, 667, 818, 898, 910, 925
MmeI TCCRAC 1 cut(s) 952
MnlI CCTC 6 cut(s) 22, 35, 177, 194, 544, 685
MroI TCCGGA 1 cut(s) 742
MseI TTAA 4 cut(s) 137, 195, 615, 750
MslI CAYNNNNRTG 1 cut(s) 396
MspI CCGG 1 cut(s) 743
MspR9I CCNGG 1 cut(s) 291
MssI GTTTAAAC 1 cut(s) 138
Mva1269I GAATGC 2 cut(s) 840, 965
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 3 cut(s) 53, 247, 292
NcoI CCATGG 1 cut(s) 94
NdeII GATC 5 cut(s) 368, 379, 658, 877, 943
NlaIII CATG 7 cut(s) 37, 62, 98, 353, 439, 458, 703
NlaIV GGNNCC 1 cut(s) 260
NmuCI GTSAC 2 cut(s) 779, 792
PagI TCATGA 1 cut(s) 349
PciSI GCTCTTC 2 cut(s) 146, 219
PctI GAATGC 2 cut(s) 840, 965
PfeI GAWTC 1 cut(s) 766
PflFI GACNNNGTC 1 cut(s) 625
PkrI GCNGC 4 cut(s) 158, 475, 595, 840
PmeI GTTTAAAC 1 cut(s) 138
PshBI ATTAAT 1 cut(s) 615
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 260
PstI CTGCAG 1 cut(s) 161
PsuI RGATCY 2 cut(s) 368, 379
PsyI GACNNNGTC 1 cut(s) 625
RsaI GTAC 2 cut(s) 466, 484
RsaNI GTAC 2 cut(s) 465, 483
RseI CAYNNNNRTG 1 cut(s) 396
SapI GCTCTTC 2 cut(s) 146, 219
SaqAI TTAA 4 cut(s) 137, 195, 615, 750
SatI GCNGC 4 cut(s) 157, 474, 594, 839
Sau3AI GATC 5 cut(s) 368, 379, 658, 877, 943
ScrFI CCNGG 1 cut(s) 291
SfcI CTRYAG 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 8 cut(s) 175, 331, 409, 667, 818, 898, 910, 925
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 2 cut(s) 94, 964
TaaI ACNGT 1 cut(s) 627
TaiI ACGT 1 cut(s) 799
TaqI TCGA 1 cut(s) 880
TasI AATT 8 cut(s) 175, 331, 409, 667, 818, 898, 910, 925
TfiI GAWTC 1 cut(s) 766
Tru1I TTAA 4 cut(s) 137, 195, 615, 750
Tru9I TTAA 4 cut(s) 137, 195, 615, 750
TscAI CASTG 3 cut(s) 82, 553, 784
TseFI GTSAC 2 cut(s) 779, 792
TseI GCWGC 4 cut(s) 156, 473, 593, 838
Tsp45I GTSAC 2 cut(s) 779, 792
TspDTI ATGAA 7 cut(s) 50, 75, 234, 321, 338, 627, 822
TspGWI ACGGA 1 cut(s) 452
TspRI CASTG 3 cut(s) 82, 553, 784
Tth111I GACNNNGTC 1 cut(s) 625
VspI ATTAAT 1 cut(s) 615
XapI RAATTY 4 cut(s) 331, 409, 667, 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.