Prupe.7G201600_v2.0.a1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0016234
Physical Location & Seq
Reverse (-)
18780339 .. 18781959
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G201600.1

Sequence Viewer

Length: 972 bp
ATGGGGAGAAGCGCTTGTTGTGCAAAGGAGGGCTTGAACAAAGGTGCTTGGACTGCCCATGAAGACAAAGTTCTCAGTGAATACATCAAACTCCATGGTGAAGGCAGATGGAGAAACCTCCCCAAAAAAGCAGGTCTGAAAAGATGTGGGAAGAGCTGCAGGCTTAGGTGGTTGAATTATCTGAGGCCAGACATTAAGAGAGGCAACATATCACCAGATGAAGAAGAGCTTATCATCAGGCTTCACAAGCTTTTGGGGAACAGATGGTCTCTAATAGCTGGTAGGCTTCCAGGGCGAACAGACAATGAAATAAAAAACTACTGGAACACCAATTTAGGCAAAAAAATCCAAGACCAACAGCGGCAAGGCTCTGCTTCAAATCTCAAGCACCACAACAAAAATGGTGAACCAGTTTCCAAAAAGGCCAAGACTATGGAGGACATGTCTCCCAACATGACCTCACCATCACCATCCAAGATGTCCCCAGTGGTCAGAACCAAAGCTGCTAAGTGCACCAAAGTTTTCATCAACCCAGACCCTCACAAACTCCCACTTGGCCACCAACATTGTGAAGAAGACAACAGAGGAGGATTGATGTTTGATAGGCATGCAGGGGATGACCACACGAACAATGGGTCATCGTCATTGTCCTCCTTCTCTAATATCGCTGATGAAGAAAATTCGTCCTCGGATTTTCTAGTGGATTTTGACATGAACGAGATTAGCCTAGCAAGTCTCCTGAATTCTGATTTTCCGGCCATTAATTGTGACGATGTTGATCAAAATCGTGACAATAGTTTGTCACACTGTGTGGATCAAACAGCTCAAATTTTCTCAGAGGAAATGTTGCAGCATTTGAATGTTGGCAGCCACGATTGTGTTCAAGTTCAACCAAATTTGGTTCTTAATTTCCATTCCTTGACCTCTTTTCTCGATGGGGATCAAGGAGGGGAAGAATGGCTTGGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

324

Amino Acids

36.2

Weight (kDa)

6.4

Isoelectric Point (pI)

52.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08390 FvH4_1g08390
malus_domestica MD02G1087900.v1.1 MD15G1215500.v1.1
prunus_persica Prupe.7G201600_v2.0.a1
pyrus_communis pycom02g07060 pycom15g19120
rosa_chinensis RchiOBHm_Chr2g0094491
rosa_laevigata RLG00000016495
rosa_multiflora Rmu_sc0004359.1_g000048
rosa_roxburghii Rroxscaffold_2G00147130
rosa_rugosa Rorug02G0044200
rosa_samantha Rh2BG092700 Rh2CG095200 Rh2DG091500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 122
AciI CCGC 1 cut(s) 361
AclWI GGATC 2 cut(s) 822, 948
AcoI YGGCCR 2 cut(s) 556, 756
AcsI RAATTY 4 cut(s) 679, 742, 828, 895
AdeI CACNNNGTG 2 cut(s) 809, 811
AfeI AGCGCT 1 cut(s) 13
AflIII ACRYGT 1 cut(s) 441
AgsI TTSAA 6 cut(s) 37, 175, 378, 859, 884, 890
AjnI CCWGG 1 cut(s) 289
AjuI GAANNNNNNNTTGG 1 cut(s) 945
AleI CACNNNNGTG 1 cut(s) 876
AluBI AGCT 6 cut(s) 156, 229, 250, 278, 503, 824
AluI AGCT 6 cut(s) 156, 229, 250, 278, 503, 824
Alw21I GWGCWC 1 cut(s) 515
Alw26I GTCTC 3 cut(s) 273, 450, 740
Alw44I GTGCAC 1 cut(s) 511
AlwI GGATC 2 cut(s) 822, 948
Aor51HI AGCGCT 1 cut(s) 13
AoxI GGCC 4 cut(s) 185, 423, 556, 756
ApaLI GTGCAC 1 cut(s) 511
ApeKI GCWGC 4 cut(s) 156, 503, 850, 867
ApoI RAATTY 4 cut(s) 679, 742, 828, 895
ArsI GACNNNNNNTTYG 2 cut(s) 620, 652
AseI ATTAAT 1 cut(s) 762
AspLEI GCGC 1 cut(s) 14
AsuHPI GGTGA 5 cut(s) 110, 204, 416, 453, 459
BaeGI GKGCMC 1 cut(s) 515
BalI TGGCCA 1 cut(s) 558
BbsI GAAGAC 2 cut(s) 69, 582
Bbv12I GWGCWC 1 cut(s) 515
BbvI GCAGC 4 cut(s) 143, 490, 862, 879
BccI CCATC 5 cut(s) 102, 258, 472, 478, 929
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 778
BcoDI GTCTC 3 cut(s) 273, 450, 740
BfaI CTAG 2 cut(s) 698, 728
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 15
BfuAI ACCTGC 1 cut(s) 122
BisI GCNGC 5 cut(s) 157, 362, 504, 851, 868
BlsI GCNGC 5 cut(s) 158, 363, 505, 852, 869
Bme1390I CCNGG 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 291
BmrI ACTGGG 1 cut(s) 479
BmuI ACTGGG 1 cut(s) 479
BpiI GAAGAC 2 cut(s) 69, 582
Bpu10I CCTNAGC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 368
BsaBI GATNNNNATC 3 cut(s) 777, 783, 939
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 3 cut(s) 94, 290, 687
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bse1I ACTGG 3 cut(s) 326, 410, 485
Bse8I GATNNNNATC 3 cut(s) 777, 783, 939
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 3 cut(s) 94, 290, 687
BseGI GGATG 2 cut(s) 470, 622
BseJI GATNNNNATC 3 cut(s) 777, 783, 939
BseMII CTCAG 3 cut(s) 88, 173, 849
BseNI ACTGG 3 cut(s) 326, 410, 485
BseRI GAGGAG 1 cut(s) 600
BseSI GKGCMC 1 cut(s) 515
BseXI GCAGC 4 cut(s) 143, 490, 862, 879
BshFI GGCC 4 cut(s) 187, 425, 558, 758
BsiHKAI GWGCWC 1 cut(s) 515
BsiSI CCGG 1 cut(s) 755
BslFI GGGAC 1 cut(s) 466
BsmAI GTCTC 3 cut(s) 273, 450, 740
BsmFI GGGAC 1 cut(s) 466
BsnI GGCC 4 cut(s) 187, 425, 558, 758
Bso31I GGTCTC 1 cut(s) 273
Bsp1286I GDGCHC 1 cut(s) 515
Bsp143I GATC 3 cut(s) 778, 814, 940
Bsp19I CCATGG 1 cut(s) 94
BspACI CCGC 1 cut(s) 361
BspANI GGCC 4 cut(s) 187, 425, 558, 758
BspCNI CTCAG 3 cut(s) 87, 174, 848
BspMAI CTGCAG 1 cut(s) 161
BspMI ACCTGC 1 cut(s) 122
BspPI GGATC 2 cut(s) 822, 948
BspQI GCTCTTC 2 cut(s) 146, 219
BspTNI GGTCTC 1 cut(s) 273
BsrI ACTGG 3 cut(s) 326, 410, 485
BssECI CCNNGG 3 cut(s) 94, 290, 687
BssMI GATC 3 cut(s) 778, 814, 940
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 809
Bst6I CTCTTC 2 cut(s) 146, 219
BstC8I GCNNGC 2 cut(s) 161, 609
BstDEI CTNAG 5 cut(s) 74, 164, 182, 507, 835
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 2 cut(s) 470, 622
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 3 cut(s) 781, 817, 943
BstMAI GTCTC 3 cut(s) 273, 450, 740
BstMBI GATC 3 cut(s) 778, 814, 940
BstMWI GCNNNNNNNGC 4 cut(s) 20, 53, 247, 292
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 2 cut(s) 445, 611
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 157
BstSLI GKGCMC 1 cut(s) 515
BstV1I GCAGC 4 cut(s) 143, 490, 862, 879
BstV2I GAAGAC 2 cut(s) 69, 582
BstXI CCANNNNNNTGG 1 cut(s) 433
BsuRI GGCC 4 cut(s) 187, 425, 558, 758
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 2 cut(s) 470, 622
BtsIMutI CAGTG 3 cut(s) 82, 492, 805
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 2 cut(s) 161, 609
CfoI GCGC 1 cut(s) 14
CspCI CAANNNNNGTGG 2 cut(s) 548, 583
CviAII CATG 6 cut(s) 59, 95, 442, 454, 608, 712
DdeI CTNAG 5 cut(s) 74, 164, 182, 507, 835
DpnI GATC 3 cut(s) 780, 816, 942
DpnII GATC 3 cut(s) 778, 814, 940
DraIII CACNNNGTG 2 cut(s) 809, 811
EaeI YGGCCR 2 cut(s) 556, 756
Eam1104I CTCTTC 2 cut(s) 146, 219
EarI CTCTTC 2 cut(s) 146, 219
Eco130I CCWWGG 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 273
Eco47III AGCGCT 1 cut(s) 13
EcoRI GAATTC 1 cut(s) 742
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 6 cut(s) 62, 98, 445, 457, 611, 715
FaiI YATR 8 cut(s) 60, 96, 209, 434, 443, 455, 609, 713
FalI AAGNNNNNCTT 5 cut(s) 17, 49, 213, 245, 945
FaqI GGGAC 1 cut(s) 466
FatI CATG 6 cut(s) 58, 94, 441, 453, 607, 711
FbaI TGATCA 1 cut(s) 778
Fnu4HI GCNGC 5 cut(s) 157, 362, 504, 851, 868
FokI GGATG 2 cut(s) 457, 629
Fsp4HI GCNGC 5 cut(s) 157, 362, 504, 851, 868
FspBI CTAG 2 cut(s) 698, 728
GlaI GCGC 1 cut(s) 13
GluI GCNGC 5 cut(s) 157, 362, 504, 851, 868
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 4 cut(s) 187, 425, 558, 758
HapII CCGG 1 cut(s) 755
HhaI GCGC 1 cut(s) 14
Hin1II CATG 6 cut(s) 62, 98, 445, 457, 611, 715
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 248
HpaII CCGG 1 cut(s) 755
HphI GGTGA 5 cut(s) 110, 204, 416, 453, 459
Hpy166II GTNNAC 2 cut(s) 407, 513
Hpy188I TCNGA 6 cut(s) 138, 183, 494, 691, 748, 838
Hpy188III TCNNGA 3 cut(s) 739, 788, 932
Hpy8I GTNNAC 2 cut(s) 407, 513
HpyAV CCTTC 2 cut(s) 95, 664
HpyCH4III ACNGT 1 cut(s) 809
HpyCH4V TGCA 5 cut(s) 23, 159, 513, 611, 850
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 53, 247, 292
HpyF3I CTNAG 5 cut(s) 74, 164, 182, 507, 835
Hsp92II CATG 6 cut(s) 62, 98, 445, 457, 611, 715
HspAI GCGC 1 cut(s) 12
Ksp22I TGATCA 1 cut(s) 778
Kzo9I GATC 3 cut(s) 778, 814, 940
LguI GCTCTTC 2 cut(s) 146, 219
Lsp1109I GCAGC 4 cut(s) 143, 490, 862, 879
MaeI CTAG 2 cut(s) 698, 728
MaeIII GTNAC 3 cut(s) 767, 788, 801
MalI GATC 3 cut(s) 780, 816, 942
MboI GATC 3 cut(s) 778, 814, 940
MboII GAAGA 8 cut(s) 74, 163, 233, 236, 584, 587, 686, 965
MhlI GDGCHC 1 cut(s) 515
MlsI TGGCCA 1 cut(s) 558
MluCI AATT 8 cut(s) 175, 331, 679, 742, 763, 828, 895, 907
MluNI TGGCCA 1 cut(s) 558
Mox20I TGGCCA 1 cut(s) 558
MscI TGGCCA 1 cut(s) 558
MseI TTAA 3 cut(s) 195, 762, 906
MslI CAYNNNNRTG 2 cut(s) 858, 876
Msp20I TGGCCA 1 cut(s) 558
MspA1I CMGCKG 1 cut(s) 361
MspI CCGG 1 cut(s) 755
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 4 cut(s) 20, 53, 247, 292
NcoI CCATGG 1 cut(s) 94
NdeII GATC 3 cut(s) 778, 814, 940
NlaIII CATG 6 cut(s) 62, 98, 445, 457, 611, 715
NmuCI GTSAC 3 cut(s) 767, 788, 801
NspI RCATGY 2 cut(s) 445, 611
OliI CACNNNNGTG 1 cut(s) 876
PaeI GCATGC 1 cut(s) 611
PciI ACATGT 1 cut(s) 441
PciSI GCTCTTC 2 cut(s) 146, 219
PkrI GCNGC 5 cut(s) 158, 363, 505, 852, 869
PscI ACATGT 1 cut(s) 441
PshBI ATTAAT 1 cut(s) 762
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PstI CTGCAG 1 cut(s) 161
RseI CAYNNNNRTG 2 cut(s) 858, 876
SapI GCTCTTC 2 cut(s) 146, 219
SaqAI TTAA 3 cut(s) 195, 762, 906
SatI GCNGC 5 cut(s) 157, 362, 504, 851, 868
Sau3AI GATC 3 cut(s) 778, 814, 940
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 515
SfcI CTRYAG 1 cut(s) 157
SmiMI CAYNNNNRTG 2 cut(s) 858, 876
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SphI GCATGC 1 cut(s) 611
Sse9I AATT 8 cut(s) 175, 331, 679, 742, 763, 828, 895, 907
SsiI CCGC 1 cut(s) 361
SspMI CTAG 2 cut(s) 698, 728
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 809
TaqI TCGA 1 cut(s) 933
TasI AATT 8 cut(s) 175, 331, 679, 742, 763, 828, 895, 907
TauI GCSGC 1 cut(s) 364
Tru1I TTAA 3 cut(s) 195, 762, 906
Tru9I TTAA 3 cut(s) 195, 762, 906
TscAI CASTG 3 cut(s) 82, 492, 812
TseFI GTSAC 3 cut(s) 767, 788, 801
TseI GCWGC 4 cut(s) 156, 503, 850, 867
Tsp45I GTSAC 3 cut(s) 767, 788, 801
TspDTI ATGAA 6 cut(s) 75, 234, 321, 514, 687, 728
TspRI CASTG 3 cut(s) 82, 492, 812
VneI GTGCAC 1 cut(s) 511
VspI ATTAAT 1 cut(s) 762
XapI RAATTY 4 cut(s) 679, 742, 828, 895
XceI RCATGY 2 cut(s) 445, 611
XcmI CCANNNNNNNNNTGG 2 cut(s) 398, 629
XspI CTAG 2 cut(s) 698, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.