FvH4_1g09000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0018345
Physical Location & Seq
Forward (+)
4762954 .. 4765353
2400 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09000.t1

Sequence Viewer

Length: 1098 bp
ATGGAAAGGTTAATTAGTCCGACCTCTTTGAGCAAGTGTTGGTCGGTGATCTGGTCAAAAGTTGATCAAGTTGGACCAGATAGAGCAAGGCAAGCGCCTAATAAGTTAAGAAAGGCTTGGGAAATCTGGGTTTTGGGTTTAGCATATGGACACCTTCACGTGTGGCTTGATGGTCTTGAGACCCTCATGAACAGCATGTTGGCCCAGCAGCCATACCTCTATCATATATTCAGTTGGATGCAAAGCAAGCTTACTGGGAAACCCCAGAAGAAACCAAACTTGACACTGTTAGATGATGATCACAAAGTGCAAAAACCTCCCAAAGAAGATCAACCAATTAGTGAATGGCCTCATGGATTGTTGACAATTGGGACATTAGGAAGCAATCATGAATCAAAAGAAGTTCTACATGCTGCTCCACCACCCTCCCCTAGAGATCCTCTACATGATTTTACACCAGAGGAAGCAACACATATTCAGAATGAGTTGAACTCATTCTTCAATGAACATGTTGATCAATCAAGTTCTTCAGCTGCAGAATTGGACAAGTTTCTTAACAGGCAATCAAGCTTGAAGTTAACTGAAAGAACAAGTAGCAATGCTGCTGATTGTGATGAGCCTAAGGAGCACTTTAATAGTCGATTCCAACGGAGTGAAAGTGTGATTCTCAGTCGAGGAAAGGATGTCAATTGCTTGGAGAACACAGACACTGCCATTGGCAAGAAGTCATTGTCTTTTCTTCTGAAGAAAATGTTTGTTTGCAGAAGTGGGTTTGCACCACCAGTTGCTGCTCCTACTCTAAGAGATCCAATGCCTAAATCAAGAATGGAGAAGTTATTGAGGGCTATACTTCAGAAGAAGATCTATCCCCAGCAAAGTTCAAATTCAACACTGTCCAAGAAAACTCACTTGGAGGACAGACACATCACCAAGTCTAATGTCACTGCCATTGAGGATCAACTAGTTCAAAAGGGAGACGTTTCAGACTCGGATGATGATGATGGAAGCAAATGGGACAAGTCTGATTCTGAATGTAAGCACTTAAACATGGTCTTGATTAAGTTGTTATATATGCAAATACATGCTTCCAAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

366

Amino Acids

41.36

Weight (kDa)

7.72

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09000
prunus_persica Prupe.7G195900_v2.0.a1
rosa_laevigata RLG00000016565
rosa_multiflora Rmu_co8252679.1_g000001
rosa_rugosa Rorug02G0050800
rosa_samantha Rh2AG099000 Rh2BG100200 Rh2CG102300 Rh2DG099800
rosa_wichuraiana Rw2G007480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 431, 800, 963
AcsI RAATTY 1 cut(s) 883
AcuI CTGAAG 3 cut(s) 513, 764, 836
AcvI CACGTG 1 cut(s) 160
AdeI CACNNNGTG 1 cut(s) 307
AflIII ACRYGT 2 cut(s) 159, 508
AgsI TTSAA 6 cut(s) 490, 502, 574, 882, 888, 968
AhlI ACTAGT 1 cut(s) 961
AjuI GAANNNNNNNTTGG 4 cut(s) 182, 214, 893, 925
AluBI AGCT 3 cut(s) 250, 533, 570
AluI AGCT 3 cut(s) 250, 533, 570
Alw21I GWGCWC 1 cut(s) 630
Alw26I GTCTC 2 cut(s) 173, 969
AlwI GGATC 3 cut(s) 431, 800, 963
AlwNI CAGNNNCTG 2 cut(s) 710, 788
AoxI GGCC 2 cut(s) 201, 347
ApeKI GCWGC 5 cut(s) 208, 413, 533, 602, 788
ApoI RAATTY 1 cut(s) 883
Asp700I GAANNNNTTC 1 cut(s) 494
AspLEI GCGC 1 cut(s) 97
AspS9I GGNCC 2 cut(s) 74, 202
AsuHPI GGTGA 2 cut(s) 58, 919
AvaII GGWCC 1 cut(s) 74
AxyI CCTNAGG 1 cut(s) 621
BbrPI CACGTG 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 630
BbvI GCAGC 5 cut(s) 220, 400, 520, 589, 775
BccI CCATC 2 cut(s) 164, 995
BclI TGATCA 3 cut(s) 64, 298, 514
BcoDI GTCTC 2 cut(s) 173, 969
BcuI ACTAGT 1 cut(s) 961
BfaI CTAG 2 cut(s) 432, 962
BfmI CTRYAG 1 cut(s) 534
BfoI RGCGCY 1 cut(s) 98
BglII AGATCT 1 cut(s) 861
BisI GCNGC 5 cut(s) 209, 414, 534, 603, 789
BlsI GCNGC 5 cut(s) 210, 415, 535, 604, 790
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 2 cut(s) 74, 202
BmrI ACTGGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 228
BmuI ACTGGG 1 cut(s) 264
BplI GAGNNNNNCTC 2 cut(s) 476, 508
BpuEI CTTGAG 1 cut(s) 197
BsaAI YACGTR 1 cut(s) 160
BsaBI GATNNNNATC 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 1089
BsaXI ACNNNNNCTCC 2 cut(s) 643, 673
Bse1I ACTGG 2 cut(s) 259, 782
Bse21I CCTNAGG 1 cut(s) 621
Bse3DI GCAATG 1 cut(s) 604
Bse8I GATNNNNATC 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 1089
BseGI GGATG 3 cut(s) 243, 688, 997
BseJI GATNNNNATC 1 cut(s) 297
BseMI GCAATG 1 cut(s) 604
BseMII CTCAG 1 cut(s) 682
BseNI ACTGG 2 cut(s) 259, 782
BseXI GCAGC 5 cut(s) 220, 400, 520, 589, 775
BseYI CCCAGC 2 cut(s) 204, 870
BshFI GGCC 2 cut(s) 203, 349
BsiHKAI GWGCWC 1 cut(s) 630
BslFI GGGAC 2 cut(s) 385, 1028
BsmAI GTCTC 2 cut(s) 173, 969
BsmBI CGTCTC 1 cut(s) 969
BsmFI GGGAC 2 cut(s) 385, 1028
BsnI GGCC 2 cut(s) 203, 349
Bso31I GGTCTC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 630
Bsp143I GATC 9 cut(s) 48, 64, 298, 328, 436, 514, 805, 861, 955
BspANI GGCC 2 cut(s) 203, 349
BspCNI CTCAG 1 cut(s) 681
BspHI TCATGA 2 cut(s) 186, 388
BspMAI CTGCAG 1 cut(s) 538
BspPI GGATC 3 cut(s) 431, 800, 963
BspTNI GGTCTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 604
BsrI ACTGG 2 cut(s) 259, 782
BssECI CCNNGG 1 cut(s) 1089
BssMI GATC 9 cut(s) 48, 64, 298, 328, 436, 514, 805, 861, 955
BssT1I CCWWGG 1 cut(s) 1089
Bst4CI ACNGT 2 cut(s) 288, 894
BstBAI YACGTR 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 93, 248
BstDEI CTNAG 3 cut(s) 621, 668, 800
BstF5I GGATG 3 cut(s) 243, 688, 997
BstH2I RGCGCY 1 cut(s) 98
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 9 cut(s) 51, 67, 301, 331, 439, 517, 808, 864, 958
BstMAI GTCTC 2 cut(s) 173, 969
BstMBI GATC 9 cut(s) 48, 64, 298, 328, 436, 514, 805, 861, 955
BstMWI GCNNNNNNNGC 4 cut(s) 92, 247, 625, 1091
BstNSI RCATGY 4 cut(s) 199, 413, 512, 1085
BstSFI CTRYAG 1 cut(s) 534
BstV1I GCAGC 5 cut(s) 220, 400, 520, 589, 775
BstX2I RGATCY 3 cut(s) 436, 805, 861
BstYI RGATCY 3 cut(s) 436, 805, 861
Bsu36I CCTNAGG 1 cut(s) 621
BsuRI GGCC 2 cut(s) 203, 349
BtsCI GGATG 3 cut(s) 243, 688, 997
BtsI GCAGTG 2 cut(s) 708, 942
BtsIMutI CAGTG 4 cut(s) 284, 708, 890, 942
Cac8I GCNNGC 2 cut(s) 93, 248
CaiI CAGNNNCTG 2 cut(s) 710, 788
CciI TCATGA 2 cut(s) 186, 388
CfoI GCGC 1 cut(s) 97
Cfr13I GGNCC 2 cut(s) 74, 202
CviAII CATG 9 cut(s) 187, 196, 353, 389, 410, 446, 509, 1048, 1082
DdeI CTNAG 3 cut(s) 621, 668, 800
DpnI GATC 9 cut(s) 50, 66, 300, 330, 438, 516, 807, 863, 957
DpnII GATC 9 cut(s) 48, 64, 298, 328, 436, 514, 805, 861, 955
DraIII CACNNNGTG 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 1089
Eco31I GGTCTC 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 74
Eco57I CTGAAG 3 cut(s) 513, 764, 836
Eco72I CACGTG 1 cut(s) 160
Eco81I CCTNAGG 1 cut(s) 621
EcoT14I CCWWGG 1 cut(s) 1089
ErhI CCWWGG 1 cut(s) 1089
Esp3I CGTCTC 1 cut(s) 969
FaeI CATG 9 cut(s) 190, 199, 356, 392, 413, 449, 512, 1051, 1085
FalI AAGNNNNNCTT 4 cut(s) 100, 132, 614, 646
FaqI GGGAC 2 cut(s) 385, 1028
FatI CATG 9 cut(s) 186, 195, 352, 388, 409, 445, 508, 1047, 1081
FauNDI CATATG 1 cut(s) 145
FbaI TGATCA 3 cut(s) 64, 298, 514
Fnu4HI GCNGC 5 cut(s) 209, 414, 534, 603, 789
FokI GGATG 3 cut(s) 250, 695, 1004
Fsp4HI GCNGC 5 cut(s) 209, 414, 534, 603, 789
FspBI CTAG 2 cut(s) 432, 962
GlaI GCGC 1 cut(s) 96
GluI GCNGC 5 cut(s) 209, 414, 534, 603, 789
GsaI CCCAGC 2 cut(s) 208, 874
HaeII RGCGCY 1 cut(s) 98
HaeIII GGCC 2 cut(s) 203, 349
HhaI GCGC 1 cut(s) 97
Hin1II CATG 9 cut(s) 190, 199, 356, 392, 413, 449, 512, 1051, 1085
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HincII GTYRAC 2 cut(s) 363, 579
HindII GTYRAC 2 cut(s) 363, 579
HindIII AAGCTT 2 cut(s) 248, 568
HinfI GANTC 5 cut(s) 392, 642, 664, 986, 1025
HpaI GTTAAC 1 cut(s) 579
HphI GGTGA 2 cut(s) 58, 919
Hpy166II GTNNAC 2 cut(s) 363, 579
Hpy188I TCNGA 8 cut(s) 21, 480, 744, 855, 985, 991, 1024, 1030
Hpy188III TCNNGA 5 cut(s) 176, 187, 389, 822, 1054
Hpy8I GTNNAC 2 cut(s) 363, 579
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 2 cut(s) 288, 894
HpyCH4IV ACGT 2 cut(s) 159, 978
HpyCH4V TGCA 6 cut(s) 241, 310, 536, 762, 776, 1075
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 247, 625, 1091
HpyF3I CTNAG 3 cut(s) 621, 668, 800
HpySE526I ACGT 2 cut(s) 159, 978
Hsp92II CATG 9 cut(s) 190, 199, 356, 392, 413, 449, 512, 1051, 1085
HspAI GCGC 1 cut(s) 95
Ksp22I TGATCA 3 cut(s) 64, 298, 514
KspAI GTTAAC 1 cut(s) 579
Kzo9I GATC 9 cut(s) 48, 64, 298, 328, 436, 514, 805, 861, 955
LmnI GCTCC 3 cut(s) 421, 625, 796
Lsp1109I GCAGC 5 cut(s) 220, 400, 520, 589, 775
LweI GCATC 1 cut(s) 228
MaeI CTAG 2 cut(s) 432, 962
MaeII ACGT 2 cut(s) 159, 978
MaeIII GTNAC 1 cut(s) 940
MalI GATC 9 cut(s) 50, 66, 300, 330, 438, 516, 807, 863, 957
MboI GATC 9 cut(s) 48, 64, 298, 328, 436, 514, 805, 861, 955
MboII GAAGA 8 cut(s) 280, 338, 490, 519, 731, 757, 868, 871
MfeI CAATTG 2 cut(s) 366, 688
MflI RGATCY 3 cut(s) 436, 805, 861
MhlI GDGCHC 1 cut(s) 630
MluCI AATT 6 cut(s) 12, 336, 366, 539, 688, 883
MlyI GAGTC 1 cut(s) 980
MmeI TCCRAC 4 cut(s) 44, 52, 215, 670
MroXI GAANNNNTTC 1 cut(s) 494
MseI TTAA 7 cut(s) 11, 107, 555, 578, 633, 1043, 1059
MspA1I CMGCKG 1 cut(s) 533
MunI CAATTG 2 cut(s) 366, 688
MwoI GCNNNNNNNGC 4 cut(s) 92, 247, 625, 1091
NdeI CATATG 1 cut(s) 145
NdeII GATC 9 cut(s) 48, 64, 298, 328, 436, 514, 805, 861, 955
NlaIII CATG 9 cut(s) 190, 199, 356, 392, 413, 449, 512, 1051, 1085
NmuCI GTSAC 1 cut(s) 940
NspI RCATGY 4 cut(s) 199, 413, 512, 1085
PagI TCATGA 2 cut(s) 186, 388
PciI ACATGT 1 cut(s) 508
PdmI GAANNNNTTC 1 cut(s) 494
PfeI GAWTC 4 cut(s) 392, 642, 664, 1025
PkrI GCNGC 5 cut(s) 210, 415, 535, 604, 790
PleI GAGTC 1 cut(s) 980
PmaCI CACGTG 1 cut(s) 160
PmlI CACGTG 1 cut(s) 160
PpsI GAGTC 1 cut(s) 980
Ppu21I YACGTR 1 cut(s) 160
PscI ACATGT 1 cut(s) 508
PspCI CACGTG 1 cut(s) 160
PspFI CCCAGC 2 cut(s) 204, 870
PspPI GGNCC 2 cut(s) 74, 202
PstI CTGCAG 1 cut(s) 538
PstNI CAGNNNCTG 2 cut(s) 710, 788
PsuI RGATCY 3 cut(s) 436, 805, 861
PvuII CAGCTG 1 cut(s) 533
SaqAI TTAA 7 cut(s) 11, 107, 555, 578, 633, 1043, 1059
SatI GCNGC 5 cut(s) 209, 414, 534, 603, 789
Sau3AI GATC 9 cut(s) 48, 64, 298, 328, 436, 514, 805, 861, 955
Sau96I GGNCC 2 cut(s) 74, 202
SchI GAGTC 1 cut(s) 980
SduI GDGCHC 1 cut(s) 630
SfaNI GCATC 1 cut(s) 228
SfcI CTRYAG 1 cut(s) 534
SinI GGWCC 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SpeI ACTAGT 1 cut(s) 961
Sse9I AATT 6 cut(s) 12, 336, 366, 539, 688, 883
SspMI CTAG 2 cut(s) 432, 962
StyI CCWWGG 1 cut(s) 1089
TaaI ACNGT 2 cut(s) 288, 894
TaiI ACGT 2 cut(s) 162, 981
TaqI TCGA 2 cut(s) 640, 673
TasI AATT 6 cut(s) 12, 336, 366, 539, 688, 883
TfiI GAWTC 4 cut(s) 392, 642, 664, 1025
Tru1I TTAA 7 cut(s) 11, 107, 555, 578, 633, 1043, 1059
Tru9I TTAA 7 cut(s) 11, 107, 555, 578, 633, 1043, 1059
TscAI CASTG 4 cut(s) 291, 715, 897, 949
TseFI GTSAC 1 cut(s) 940
TseI GCWGC 5 cut(s) 208, 413, 533, 602, 788
Tsp45I GTSAC 1 cut(s) 940
TspDTI ATGAA 3 cut(s) 203, 405, 519
TspGWI ACGGA 1 cut(s) 664
TspRI CASTG 4 cut(s) 291, 715, 897, 949
VpaK11BI GGWCC 1 cut(s) 74
XapI RAATTY 1 cut(s) 883
XceI RCATGY 4 cut(s) 199, 413, 512, 1085
XcmI CCANNNNNNNNNTGG 1 cut(s) 342
XmnI GAANNNNTTC 1 cut(s) 494
XspI CTAG 2 cut(s) 432, 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.