Rorug02G0050800

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
3896504 .. 3897398
895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0050800.1

Sequence Viewer

Length: 363 bp
ATGTTTGCCTATAGTTTTGGTCGTTGGTATCTAGGAGTTTATCTTATGTCCTTGGAAGAAAATCAAGAATCTATCACCCGAATTGGTGATTTGAAGCTGCCAAGGTTGCCTCAGGAATATGAATTTGCACAAAGATGTTATTTTGTCCATATAGGAGTTGATATCACCAAGGTCGACAAGGACGAGAAGAATTGTTTGACCCTCCAATTCATGCCTACTCGTATCTTCGAATTCTATACCAACCCGTCCACTTTTCCTGATCCTGAAGCGGAAGGATGGTGCTTGATTAATACTGCTATTTGTTATAAGCAGCCATTTGCATGTCCAAGATTCAAGCGGCTTCAATCTGTGCCAGCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

14.15

Weight (kDa)

5.45

Isoelectric Point (pI)

62.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09000
prunus_persica Prupe.7G195900_v2.0.a1
rosa_laevigata RLG00000016565
rosa_multiflora Rmu_co8252679.1_g000001
rosa_rugosa Rorug02G0050800
rosa_samantha Rh2AG099000 Rh2BG100200 Rh2CG102300 Rh2DG099800
rosa_wichuraiana Rw2G007480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 306
AccI GTMKAC 1 cut(s) 174
AciI CCGC 2 cut(s) 269, 337
AclWI GGATC 1 cut(s) 254
AcsI RAATTY 2 cut(s) 122, 230
AcuI CTGAAG 1 cut(s) 285
AgsI TTSAA 3 cut(s) 94, 334, 344
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
AlwI GGATC 1 cut(s) 254
ApeKI GCWGC 2 cut(s) 97, 310
ApoI RAATTY 2 cut(s) 122, 230
AseI ATTAAT 1 cut(s) 288
AsuHPI GGTGA 3 cut(s) 67, 98, 157
AsuII TTCGAA 1 cut(s) 228
AxyI CCTNAGG 1 cut(s) 111
BbvI GCAGC 2 cut(s) 84, 322
BccI CCATC 1 cut(s) 270
BfaI CTAG 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 10
BisI GCNGC 3 cut(s) 98, 311, 338
BlsI GCNGC 3 cut(s) 99, 312, 339
Bpu14I TTCGAA 1 cut(s) 228
BsaJI CCNNGG 3 cut(s) 51, 101, 168
Bse21I CCTNAGG 1 cut(s) 111
BseDI CCNNGG 3 cut(s) 51, 101, 168
BseGI GGATG 1 cut(s) 281
BseMII CTCAG 1 cut(s) 125
BseXI GCAGC 2 cut(s) 84, 322
Bsp119I TTCGAA 1 cut(s) 228
Bsp143I GATC 1 cut(s) 259
BspACI CCGC 2 cut(s) 269, 337
BspCNI CTCAG 1 cut(s) 124
BspPI GGATC 1 cut(s) 254
BspT104I TTCGAA 1 cut(s) 228
BssECI CCNNGG 3 cut(s) 51, 101, 168
BssMI GATC 1 cut(s) 259
BssT1I CCWWGG 3 cut(s) 51, 101, 168
BstBI TTCGAA 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 281
BstKTI GATC 1 cut(s) 262
BstMBI GATC 1 cut(s) 259
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 324
BstSFI CTRYAG 1 cut(s) 10
BstV1I GCAGC 2 cut(s) 84, 322
Bsu36I CCTNAGG 1 cut(s) 111
BtsCI GGATG 1 cut(s) 281
Cac8I GCNNGC 1 cut(s) 354
CviAII CATG 2 cut(s) 211, 321
CviJI RGCY 3 cut(s) 97, 313, 340
CviKI_1 RGCY 3 cut(s) 97, 313, 340
DdeI CTNAG 1 cut(s) 111
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
Eco130I CCWWGG 3 cut(s) 51, 101, 168
Eco32I GATATC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 285
Eco81I CCTNAGG 1 cut(s) 111
EcoRI GAATTC 1 cut(s) 230
EcoRV GATATC 1 cut(s) 163
EcoT14I CCWWGG 3 cut(s) 51, 101, 168
ErhI CCWWGG 3 cut(s) 51, 101, 168
FaeI CATG 2 cut(s) 214, 324
FaiI YATR 9 cut(s) 12, 47, 120, 150, 152, 212, 237, 306, 322
FatI CATG 2 cut(s) 210, 320
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 3 cut(s) 98, 311, 338
FokI GGATG 1 cut(s) 288
Fsp4HI GCNGC 3 cut(s) 98, 311, 338
FspBI CTAG 1 cut(s) 32
GluI GCNGC 3 cut(s) 98, 311, 338
Hin1II CATG 2 cut(s) 214, 324
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 2 cut(s) 68, 330
HphI GGTGA 3 cut(s) 67, 98, 157
Hpy166II GTNNAC 2 cut(s) 175, 249
Hpy188III TCNNGA 4 cut(s) 65, 113, 257, 263
Hpy8I GTNNAC 2 cut(s) 175, 249
HpyAV CCTTC 1 cut(s) 266
HpyCH4V TGCA 2 cut(s) 128, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
HpyF3I CTNAG 1 cut(s) 111
Hsp92II CATG 2 cut(s) 214, 324
Kzo9I GATC 1 cut(s) 259
LpnPI CCDG 3 cut(s) 98, 270, 276
Lsp1109I GCAGC 2 cut(s) 84, 322
MaeI CTAG 1 cut(s) 32
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 3 cut(s) 68, 199, 217
MluCI AATT 5 cut(s) 81, 122, 190, 206, 230
MnlI CCTC 2 cut(s) 120, 212
MseI TTAA 1 cut(s) 288
MslI CAYNNNNRTG 2 cut(s) 133, 319
MwoI GCNNNNNNNGC 1 cut(s) 106
NdeII GATC 1 cut(s) 259
NlaIII CATG 2 cut(s) 214, 324
NspI RCATGY 1 cut(s) 324
NspV TTCGAA 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PfeI GAWTC 2 cut(s) 68, 330
PkrI GCNGC 3 cut(s) 99, 312, 339
PshBI ATTAAT 1 cut(s) 288
PsiI TTATAA 1 cut(s) 306
RseI CAYNNNNRTG 2 cut(s) 133, 319
SalI GTCGAC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 3 cut(s) 98, 311, 338
Sau3AI GATC 1 cut(s) 259
SetI ASST 3 cut(s) 99, 107, 174
SfcI CTRYAG 1 cut(s) 10
SfuI TTCGAA 1 cut(s) 228
SmiMI CAYNNNNRTG 2 cut(s) 133, 319
Sse9I AATT 5 cut(s) 81, 122, 190, 206, 230
SsiI CCGC 2 cut(s) 269, 337
SspMI CTAG 1 cut(s) 32
StyI CCWWGG 3 cut(s) 51, 101, 168
TaqI TCGA 2 cut(s) 174, 228
TasI AATT 5 cut(s) 81, 122, 190, 206, 230
TauI GCSGC 1 cut(s) 340
TfiI GAWTC 2 cut(s) 68, 330
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TseI GCWGC 2 cut(s) 97, 310
TspDTI ATGAA 2 cut(s) 135, 199
VspI ATTAAT 1 cut(s) 288
XapI RAATTY 2 cut(s) 122, 230
XceI RCATGY 1 cut(s) 324
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.