Rw2G007480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018345
Physical Location & Seq
Forward (+)
7299722 .. 7301345
1624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G007480.1

Sequence Viewer

Length: 840 bp
ATGAAGATAGTCAGCTGGATGCAAAGCAAGCTTACTGGGAAACCCCAGATTAAGAAACCAGACTTGAAACTGTTTGATGATGATCACAAAGTGCAAAAACCTCCCAAAGAAGATCAACCAATTAGTGAATGGCCTCATGGACTGTTGACAATTGGAACATTAGGAAGTAATCATGAATCAAAAGAAGATCTACATGCATGGGCTAATCCACCACCCTCCCCTAGAGATCCTCTACATGATTTTACACCAGCGGAAGCAACACACATTCAGAATGAGTTGAACTCATTCTTCAATGAACATGTTGATCAATCAAGTTCTTCAGCTGCAGAACTGGGCAAGTTTATTAACAGGCAATCAAGCTTGAAGTTATCTGAAATAACTAATAATAGCAATGCTGCTGATTCTGATGAGCCTAAGGAGCATTTTAATCGTCGATTCCAGCGCAGCGCAAGTGTGGTTCTTAGTCGAGGGAAAGATGTCAATTGCTTGGAGAACACAAACACTGCCATCGGAAAGAAGTCATTGACTTTTCTTCTGAAAAAAATGTTTGTTTGCAGTAGTGGGTTTGCAGCACCAGTTGCTGCTCCTGCTCTAAGAGATCCAATCCCTGAATCAAGAATGGAGAAGTTATTGAGGGCTATACTTCACAAGAAGATCTGTCCCCAGCAAAGTTCAAATTCAACAGTTTCCAAGAAAAAGTACTTGGAGAACAGACACATCACCAAGTCTGTCACTGCCACTGAGGAGCAACTAGATCCTAAACGAGACGATTCAGACTCGGATGACGATGGAAGTAAATGGGACAAGACTGATTCTGAATACATCGTTTTAGAGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

279

Amino Acids

31.34

Weight (kDa)

6.56

Isoelectric Point (pI)

48.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09000
prunus_persica Prupe.7G195900_v2.0.a1
rosa_laevigata RLG00000016565
rosa_multiflora Rmu_co8252679.1_g000001
rosa_rugosa Rorug02G0050800
rosa_samantha Rh2AG099000 Rh2BG100200 Rh2CG102300 Rh2DG099800
rosa_wichuraiana Rw2G007480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 251
AclWI GGATC 3 cut(s) 221, 593, 749
AcsI RAATTY 1 cut(s) 676
AcuI CTGAAG 1 cut(s) 303
AdeI CACNNNGTG 1 cut(s) 91
AfaI GTAC 1 cut(s) 701
AflIII ACRYGT 1 cut(s) 298
AgsI TTSAA 6 cut(s) 67, 280, 292, 364, 675, 681
AjuI GAANNNNNNNTTGG 2 cut(s) 686, 718
AluBI AGCT 4 cut(s) 15, 31, 323, 360
AluI AGCT 4 cut(s) 15, 31, 323, 360
Alw26I GTCTC 1 cut(s) 759
AlwI GGATC 3 cut(s) 221, 593, 749
AlwNI CAGNNNCTG 1 cut(s) 581
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 5 cut(s) 323, 395, 444, 569, 581
ApoI RAATTY 1 cut(s) 676
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 2 cut(s) 444, 449
AsuHPI GGTGA 1 cut(s) 712
AxyI CCTNAGG 1 cut(s) 414
BbvI GCAGC 5 cut(s) 310, 382, 456, 568, 581
BccI CCATC 2 cut(s) 515, 782
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BclI TGATCA 2 cut(s) 82, 304
BcoDI GTCTC 1 cut(s) 759
BfaI CTAG 2 cut(s) 222, 752
BfmI CTRYAG 1 cut(s) 324
BglII AGATCT 2 cut(s) 187, 654
BisI GCNGC 5 cut(s) 324, 396, 445, 570, 582
BlsI GCNGC 5 cut(s) 325, 397, 446, 571, 583
BmcAI AGTACT 1 cut(s) 701
BmrI ACTGGG 2 cut(s) 45, 341
BmsI GCATC 1 cut(s) 9
BmuI ACTGGG 2 cut(s) 45, 341
BplI GAGNNNNNCTC 2 cut(s) 266, 298
BsaBI GATNNNNATC 1 cut(s) 81
Bse1I ACTGG 3 cut(s) 40, 336, 575
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 1 cut(s) 397
Bse8I GATNNNNATC 1 cut(s) 81
BseGI GGATG 2 cut(s) 24, 787
BseJI GATNNNNATC 1 cut(s) 81
BseMI GCAATG 1 cut(s) 397
BseMII CTCAG 1 cut(s) 732
BseNI ACTGG 3 cut(s) 40, 336, 575
BseRI GAGGAG 1 cut(s) 758
BseXI GCAGC 5 cut(s) 310, 382, 456, 568, 581
BseYI CCCAGC 1 cut(s) 663
BshFI GGCC 1 cut(s) 133
BslFI GGGAC 2 cut(s) 645, 815
BsmAI GTCTC 1 cut(s) 759
BsmBI CGTCTC 1 cut(s) 759
BsmFI GGGAC 2 cut(s) 645, 815
BsnI GGCC 1 cut(s) 133
Bsp143I GATC 8 cut(s) 82, 112, 187, 226, 304, 598, 654, 754
BspACI CCGC 1 cut(s) 251
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 733
BspHI TCATGA 1 cut(s) 172
BspMAI CTGCAG 1 cut(s) 328
BspPI GGATC 3 cut(s) 221, 593, 749
BsrDI GCAATG 1 cut(s) 397
BsrI ACTGG 3 cut(s) 40, 336, 575
BssMI GATC 8 cut(s) 82, 112, 187, 226, 304, 598, 654, 754
Bst4CI ACNGT 3 cut(s) 72, 144, 685
BstAPI GCANNNNNTGC 1 cut(s) 578
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 4 cut(s) 414, 461, 593, 741
BstF5I GGATG 2 cut(s) 24, 787
BstHHI GCGC 2 cut(s) 444, 449
BstKTI GATC 8 cut(s) 85, 115, 190, 229, 307, 601, 657, 757
BstMAI GTCTC 1 cut(s) 759
BstMBI GATC 8 cut(s) 82, 112, 187, 226, 304, 598, 654, 754
BstMWI GCNNNNNNNGC 4 cut(s) 28, 418, 578, 587
BstNSI RCATGY 2 cut(s) 197, 302
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 5 cut(s) 310, 382, 456, 568, 581
BstX2I RGATCY 5 cut(s) 187, 226, 598, 654, 754
BstYI RGATCY 5 cut(s) 187, 226, 598, 654, 754
Bsu36I CCTNAGG 1 cut(s) 414
BsuRI GGCC 1 cut(s) 133
BtsCI GGATG 2 cut(s) 24, 787
BtsI GCAGTG 2 cut(s) 501, 732
BtsIMutI CAGTG 3 cut(s) 501, 732, 738
Cac8I GCNNGC 1 cut(s) 29
CaiI CAGNNNCTG 1 cut(s) 581
CciI TCATGA 1 cut(s) 172
CfoI GCGC 2 cut(s) 444, 449
Csp6I GTAC 1 cut(s) 700
CviAII CATG 6 cut(s) 137, 173, 194, 198, 236, 299
CviJI RGCY 8 cut(s) 15, 31, 133, 203, 323, 360, 412, 638
CviKI_1 RGCY 8 cut(s) 15, 31, 133, 203, 323, 360, 412, 638
CviQI GTAC 1 cut(s) 700
DdeI CTNAG 4 cut(s) 414, 461, 593, 741
DpnI GATC 8 cut(s) 84, 114, 189, 228, 306, 600, 656, 756
DpnII GATC 8 cut(s) 82, 112, 187, 226, 304, 598, 654, 754
DraIII CACNNNGTG 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 303
Eco81I CCTNAGG 1 cut(s) 414
EcoT22I ATGCAT 1 cut(s) 199
Esp3I CGTCTC 1 cut(s) 759
FaeI CATG 6 cut(s) 140, 176, 197, 201, 239, 302
FaiI YATR 8 cut(s) 138, 174, 195, 199, 237, 300, 641, 838
FaqI GGGAC 2 cut(s) 645, 815
FatI CATG 6 cut(s) 136, 172, 193, 197, 235, 298
FbaI TGATCA 2 cut(s) 82, 304
Fnu4HI GCNGC 5 cut(s) 324, 396, 445, 570, 582
FokI GGATG 2 cut(s) 31, 794
Fsp4HI GCNGC 5 cut(s) 324, 396, 445, 570, 582
FspBI CTAG 2 cut(s) 222, 752
GlaI GCGC 2 cut(s) 443, 448
GluI GCNGC 5 cut(s) 324, 396, 445, 570, 582
GsaI CCCAGC 1 cut(s) 667
HaeIII GGCC 1 cut(s) 133
HhaI GCGC 2 cut(s) 444, 449
Hin1II CATG 6 cut(s) 140, 176, 197, 201, 239, 302
Hin6I GCGC 2 cut(s) 442, 447
HinP1I GCGC 2 cut(s) 442, 447
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HindIII AAGCTT 2 cut(s) 29, 358
HinfI GANTC 7 cut(s) 176, 401, 435, 611, 770, 776, 812
HphI GGTGA 1 cut(s) 712
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 8 cut(s) 270, 373, 406, 512, 537, 775, 781, 817
Hpy188III TCNNGA 2 cut(s) 173, 615
Hpy8I GTNNAC 1 cut(s) 147
Hpy99I CGWCG 1 cut(s) 435
HpyCH4III ACNGT 3 cut(s) 72, 144, 685
HpyCH4V TGCA 6 cut(s) 22, 94, 197, 326, 555, 569
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 418, 578, 587
HpyF3I CTNAG 4 cut(s) 414, 461, 593, 741
Hsp92II CATG 6 cut(s) 140, 176, 197, 201, 239, 302
HspAI GCGC 2 cut(s) 442, 447
Ksp22I TGATCA 2 cut(s) 82, 304
Kzo9I GATC 8 cut(s) 82, 112, 187, 226, 304, 598, 654, 754
LmnI GCTCC 3 cut(s) 418, 589, 745
Lsp1109I GCAGC 5 cut(s) 310, 382, 456, 568, 581
LweI GCATC 1 cut(s) 9
MaeI CTAG 2 cut(s) 222, 752
MaeIII GTNAC 1 cut(s) 730
MalI GATC 8 cut(s) 84, 114, 189, 228, 306, 600, 656, 756
MboI GATC 8 cut(s) 82, 112, 187, 226, 304, 598, 654, 754
MboII GAAGA 7 cut(s) 16, 122, 197, 280, 309, 524, 664
MfeI CAATTG 2 cut(s) 150, 481
MflI RGATCY 5 cut(s) 187, 226, 598, 654, 754
MluCI AATT 4 cut(s) 120, 150, 481, 676
MlyI GAGTC 1 cut(s) 770
MnlI CCTC 7 cut(s) 111, 144, 226, 240, 461, 627, 736
Mph1103I ATGCAT 1 cut(s) 199
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 3 cut(s) 51, 345, 426
MspA1I CMGCKG 3 cut(s) 15, 251, 323
MteI GCGCNGCGC 1 cut(s) 445
MunI CAATTG 2 cut(s) 150, 481
MwoI GCNNNNNNNGC 4 cut(s) 28, 418, 578, 587
NdeII GATC 8 cut(s) 82, 112, 187, 226, 304, 598, 654, 754
NlaIII CATG 6 cut(s) 140, 176, 197, 201, 239, 302
NmuCI GTSAC 1 cut(s) 730
NsiI ATGCAT 1 cut(s) 199
NspI RCATGY 2 cut(s) 197, 302
PagI TCATGA 1 cut(s) 172
PciI ACATGT 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 6 cut(s) 176, 401, 435, 611, 770, 812
PkrI GCNGC 5 cut(s) 325, 397, 446, 571, 583
PleI GAGTC 1 cut(s) 770
PpsI GAGTC 1 cut(s) 770
PscI ACATGT 1 cut(s) 298
PspFI CCCAGC 1 cut(s) 663
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 5 cut(s) 187, 226, 598, 654, 754
PvuII CAGCTG 2 cut(s) 15, 323
RsaI GTAC 1 cut(s) 701
RsaNI GTAC 1 cut(s) 700
SaqAI TTAA 3 cut(s) 51, 345, 426
SatI GCNGC 5 cut(s) 324, 396, 445, 570, 582
Sau3AI GATC 8 cut(s) 82, 112, 187, 226, 304, 598, 654, 754
ScaI AGTACT 1 cut(s) 701
SchI GAGTC 1 cut(s) 770
SetI ASST 5 cut(s) 17, 33, 103, 325, 362
SfaNI GCATC 1 cut(s) 9
SfcI CTRYAG 1 cut(s) 324
Sse9I AATT 4 cut(s) 120, 150, 481, 676
SsiI CCGC 1 cut(s) 251
SspMI CTAG 2 cut(s) 222, 752
TaaI ACNGT 3 cut(s) 72, 144, 685
TaqI TCGA 2 cut(s) 433, 466
TasI AATT 4 cut(s) 120, 150, 481, 676
TatI WGTACW 1 cut(s) 699
TfiI GAWTC 6 cut(s) 176, 401, 435, 611, 770, 812
Tru1I TTAA 3 cut(s) 51, 345, 426
Tru9I TTAA 3 cut(s) 51, 345, 426
TscAI CASTG 3 cut(s) 508, 739, 745
TseFI GTSAC 1 cut(s) 730
TseI GCWGC 5 cut(s) 323, 395, 444, 569, 581
Tsp45I GTSAC 1 cut(s) 730
TspDTI ATGAA 3 cut(s) 17, 189, 309
TspRI CASTG 3 cut(s) 508, 739, 745
XapI RAATTY 1 cut(s) 676
XceI RCATGY 2 cut(s) 197, 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 126
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 2 cut(s) 222, 752
ZrmI AGTACT 1 cut(s) 701
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.