Rh2DG099800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0018345
Physical Location & Seq
Forward (+)
8015429 .. 8023254
7826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG099800.1

Sequence Viewer

Length: 753 bp
ATGGAAAGGTTAATTAGTCCGACCTCTTTGAGACAGGTGTTGGTCGAATACGGTCCGATGAGCACTTATCACTGTGTCAAAGGAAGTAATCATGAATCAAAAGAAGATCTACATGCATGGGCTAATCCACCACCCTCCCCTAGAGAACCTCTACATGATTTTACACCAGCGGAAGCAACACACATTCAGAATGAGTTGAACTCATTCGTCAATGAACATTTTGATCAATCAAGTTCTTCAGCTGCAGAACTGGGCAAGTTTCTTAACAGGCAATCAAGCTTGAAGTTAACTGAAAGAACTAATAATAGCAATGCTGCTGATTCTGATGAGCCTAAGGAGCATTTTAATAGTCGATTCCAGCGCAGCGCAAGTGTGGTTCTTAGTCGAGGGAAAGATGTCAATTGCTTGGAGAACACAAACACTGCCATCGGAAAGAAGTCATTGACTTTTCTTCTGAAAAAAATGTTTGTTTGCAGTAGTGGGTTTGCAGCACCAGTTGCTGCTCCTGCTCTAAGAGATCTAATCCCTGAATCAAGAATGGAGAAGTTATTGAGGGCTATACTTCAGAAGAAAATCTATCCCCAGCCAAGTTCAAATTCAACAGTTTCCAAGAAAAAGTACTTGGAGAACAGGCACATCACCAAGTCTGTCACTGCCACTGAGGAGCAACTAGATCCTAAACGAGACGATTCAGAGACTCGGATGACGATGGAAGTAAATGGGACAAGACTGATTCTGAATACATCGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

28.08

Weight (kDa)

8.69

Isoelectric Point (pI)

51.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09000
prunus_persica Prupe.7G195900_v2.0.a1
rosa_laevigata RLG00000016565
rosa_multiflora Rmu_co8252679.1_g000001
rosa_rugosa Rorug02G0050800
rosa_samantha Rh2AG099000 Rh2BG100200 Rh2CG102300 Rh2DG099800
rosa_wichuraiana Rw2G007480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 170
AclWI GGATC 1 cut(s) 668
AcsI RAATTY 1 cut(s) 595
AcuI CTGAAG 2 cut(s) 222, 548
AfaI GTAC 1 cut(s) 620
AgsI TTSAA 4 cut(s) 199, 283, 594, 600
AjuI GAANNNNNNNTTGG 4 cut(s) 580, 605, 612, 637
AluBI AGCT 2 cut(s) 242, 279
AluI AGCT 2 cut(s) 242, 279
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 3 cut(s) 25, 678, 689
AlwI GGATC 1 cut(s) 668
AlwNI CAGNNNCTG 1 cut(s) 500
ApeKI GCWGC 5 cut(s) 242, 314, 363, 488, 500
ApoI RAATTY 1 cut(s) 595
Asp700I GAANNNNTTC 1 cut(s) 203
AspLEI GCGC 2 cut(s) 363, 368
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 631
AvaII GGWCC 1 cut(s) 53
AxyI CCTNAGG 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 5 cut(s) 229, 301, 375, 487, 500
BccI CCATC 2 cut(s) 434, 703
BclI TGATCA 1 cut(s) 223
BcoDI GTCTC 3 cut(s) 25, 678, 689
BfaI CTAG 2 cut(s) 141, 671
BfmI CTRYAG 1 cut(s) 243
BglII AGATCT 2 cut(s) 106, 517
BisI GCNGC 5 cut(s) 243, 315, 364, 489, 501
BlsI GCNGC 5 cut(s) 244, 316, 365, 490, 502
BmcAI AGTACT 1 cut(s) 620
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmrI ACTGGG 1 cut(s) 260
BmuI ACTGGG 1 cut(s) 260
BplI GAGNNNNNCTC 2 cut(s) 185, 217
Bse1I ACTGG 2 cut(s) 255, 494
Bse21I CCTNAGG 1 cut(s) 333
Bse3DI GCAATG 1 cut(s) 316
BseGI GGATG 1 cut(s) 708
BseMI GCAATG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 651
BseNI ACTGG 2 cut(s) 255, 494
BseRI GAGGAG 1 cut(s) 677
BseXI GCAGC 5 cut(s) 229, 301, 375, 487, 500
BseYI CCCAGC 1 cut(s) 582
BsiHKAI GWGCWC 1 cut(s) 65
BslFI GGGAC 1 cut(s) 736
BsmAI GTCTC 3 cut(s) 25, 678, 689
BsmBI CGTCTC 1 cut(s) 678
BsmFI GGGAC 1 cut(s) 736
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 4 cut(s) 106, 223, 517, 673
BspACI CCGC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 652
BspHI TCATGA 1 cut(s) 91
BspMAI CTGCAG 1 cut(s) 247
BspPI GGATC 1 cut(s) 668
BsrDI GCAATG 1 cut(s) 316
BsrI ACTGG 2 cut(s) 255, 494
BssMI GATC 4 cut(s) 106, 223, 517, 673
Bst4CI ACNGT 3 cut(s) 53, 74, 604
BstAPI GCANNNNNTGC 1 cut(s) 497
BstDEI CTNAG 4 cut(s) 333, 380, 512, 660
BstF5I GGATG 1 cut(s) 708
BstHHI GCGC 2 cut(s) 363, 368
BstKTI GATC 4 cut(s) 109, 226, 520, 676
BstMAI GTCTC 3 cut(s) 25, 678, 689
BstMBI GATC 4 cut(s) 106, 223, 517, 673
BstMWI GCNNNNNNNGC 3 cut(s) 337, 497, 506
BstNSI RCATGY 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 5 cut(s) 229, 301, 375, 487, 500
BstX2I RGATCY 3 cut(s) 106, 517, 673
BstYI RGATCY 3 cut(s) 106, 517, 673
Bsu36I CCTNAGG 1 cut(s) 333
BtsCI GGATG 1 cut(s) 708
BtsI GCAGTG 2 cut(s) 420, 651
BtsIMutI CAGTG 4 cut(s) 70, 420, 651, 657
CaiI CAGNNNCTG 1 cut(s) 500
CciI TCATGA 1 cut(s) 91
CfoI GCGC 2 cut(s) 363, 368
Cfr13I GGNCC 1 cut(s) 53
CpoI CGGWCCG 1 cut(s) 53
Csp6I GTAC 1 cut(s) 619
CspI CGGWCCG 1 cut(s) 53
CviAII CATG 4 cut(s) 92, 113, 117, 155
CviJI RGCY 6 cut(s) 122, 242, 279, 331, 557, 586
CviKI_1 RGCY 6 cut(s) 122, 242, 279, 331, 557, 586
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 4 cut(s) 333, 380, 512, 660
DpnI GATC 4 cut(s) 108, 225, 519, 675
DpnII GATC 4 cut(s) 106, 223, 517, 673
Eco47I GGWCC 1 cut(s) 53
Eco57I CTGAAG 2 cut(s) 222, 548
Eco81I CCTNAGG 1 cut(s) 333
EcoT22I ATGCAT 1 cut(s) 118
Esp3I CGTCTC 1 cut(s) 678
FaeI CATG 4 cut(s) 95, 116, 120, 158
FaiI YATR 5 cut(s) 93, 114, 118, 156, 560
FaqI GGGAC 1 cut(s) 736
FatI CATG 4 cut(s) 91, 112, 116, 154
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 5 cut(s) 243, 315, 364, 489, 501
FokI GGATG 1 cut(s) 715
Fsp4HI GCNGC 5 cut(s) 243, 315, 364, 489, 501
FspBI CTAG 2 cut(s) 141, 671
GlaI GCGC 2 cut(s) 362, 367
GluI GCNGC 5 cut(s) 243, 315, 364, 489, 501
GsaI CCCAGC 1 cut(s) 586
HhaI GCGC 2 cut(s) 363, 368
Hin1II CATG 4 cut(s) 95, 116, 120, 158
Hin6I GCGC 2 cut(s) 361, 366
HinP1I GCGC 2 cut(s) 361, 366
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HindIII AAGCTT 1 cut(s) 277
HinfI GANTC 7 cut(s) 95, 320, 354, 530, 689, 697, 733
HpaI GTTAAC 1 cut(s) 288
HphI GGTGA 1 cut(s) 631
Hpy166II GTNNAC 1 cut(s) 288
Hpy188III TCNNGA 2 cut(s) 92, 534
Hpy8I GTNNAC 1 cut(s) 288
HpyCH4III ACNGT 3 cut(s) 53, 74, 604
HpyCH4V TGCA 4 cut(s) 116, 245, 474, 488
HpyF10VI GCNNNNNNNGC 3 cut(s) 337, 497, 506
HpyF3I CTNAG 4 cut(s) 333, 380, 512, 660
Hsp92II CATG 4 cut(s) 95, 116, 120, 158
HspAI GCGC 2 cut(s) 361, 366
Ksp22I TGATCA 1 cut(s) 223
KspAI GTTAAC 1 cut(s) 288
Kzo9I GATC 4 cut(s) 106, 223, 517, 673
LmnI GCTCC 3 cut(s) 337, 508, 664
Lsp1109I GCAGC 5 cut(s) 229, 301, 375, 487, 500
MaeI CTAG 2 cut(s) 141, 671
MaeIII GTNAC 1 cut(s) 649
MalI GATC 4 cut(s) 108, 225, 519, 675
MboI GATC 4 cut(s) 106, 223, 517, 673
MboII GAAGA 4 cut(s) 116, 228, 443, 580
MfeI CAATTG 1 cut(s) 400
MflI RGATCY 3 cut(s) 106, 517, 673
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 3 cut(s) 12, 400, 595
MlyI GAGTC 1 cut(s) 691
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 6 cut(s) 34, 145, 159, 380, 546, 655
Mph1103I ATGCAT 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 4 cut(s) 11, 264, 287, 345
MspA1I CMGCKG 2 cut(s) 170, 242
MteI GCGCNGCGC 1 cut(s) 364
MunI CAATTG 1 cut(s) 400
MwoI GCNNNNNNNGC 3 cut(s) 337, 497, 506
NdeII GATC 4 cut(s) 106, 223, 517, 673
NlaIII CATG 4 cut(s) 95, 116, 120, 158
NmuCI GTSAC 1 cut(s) 649
NsiI ATGCAT 1 cut(s) 118
NspI RCATGY 1 cut(s) 116
PagI TCATGA 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 6 cut(s) 95, 320, 354, 530, 689, 733
PkrI GCNGC 5 cut(s) 244, 316, 365, 490, 502
PleI GAGTC 1 cut(s) 691
PpsI GAGTC 1 cut(s) 691
PspFI CCCAGC 1 cut(s) 582
PspPI GGNCC 1 cut(s) 53
PstI CTGCAG 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 500
PsuI RGATCY 3 cut(s) 106, 517, 673
PvuII CAGCTG 1 cut(s) 242
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
Rsr2I CGGWCCG 1 cut(s) 53
RsrII CGGWCCG 1 cut(s) 53
SaqAI TTAA 4 cut(s) 11, 264, 287, 345
SatI GCNGC 5 cut(s) 243, 315, 364, 489, 501
Sau3AI GATC 4 cut(s) 106, 223, 517, 673
Sau96I GGNCC 1 cut(s) 53
ScaI AGTACT 1 cut(s) 620
SchI GAGTC 1 cut(s) 691
SduI GDGCHC 1 cut(s) 65
SetI ASST 6 cut(s) 11, 26, 39, 151, 244, 281
SfcI CTRYAG 1 cut(s) 243
SinI GGWCC 1 cut(s) 53
Sse9I AATT 3 cut(s) 12, 400, 595
SsiI CCGC 1 cut(s) 170
SspMI CTAG 2 cut(s) 141, 671
TaaI ACNGT 3 cut(s) 53, 74, 604
TaqI TCGA 3 cut(s) 45, 352, 385
TasI AATT 3 cut(s) 12, 400, 595
TatI WGTACW 1 cut(s) 618
TfiI GAWTC 6 cut(s) 95, 320, 354, 530, 689, 733
Tru1I TTAA 4 cut(s) 11, 264, 287, 345
Tru9I TTAA 4 cut(s) 11, 264, 287, 345
TscAI CASTG 4 cut(s) 77, 427, 658, 664
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 5 cut(s) 242, 314, 363, 488, 500
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 2 cut(s) 108, 228
TspRI CASTG 4 cut(s) 77, 427, 658, 664
VpaK11BI GGWCC 1 cut(s) 53
XapI RAATTY 1 cut(s) 595
XceI RCATGY 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 2 cut(s) 141, 671
ZrmI AGTACT 1 cut(s) 620
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.