Rh2BG100200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018345
Physical Location & Seq
Forward (+)
8269369 .. 8271642
2274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG100200.1

Sequence Viewer

Length: 864 bp
ATGTTGGCCCAGCCATACCTCTATCATATATTCAGCTGGATGCAAAGCAAGCTTACTGGGAAACCCCAGATTAAGAAACCAAACTTGAAACTGTTTGATGATGATCACAAAGTGCAAAAACCTCCCAAAGAAGATCAACCAATTAGTGAATGGCCTCATGGACTGTTGACAATTGGAACATTAGGAAGTAATCATGAATCAAAAGAAGATCTACATGCATGGGCTAATCCACCACCCTCCCCTAGAGATCCTGTACATGATTTTACACCAGCGGAAGCAACACACATTCAGAATGAGTTGAACTCATTCTTCAATGAACATGTTGATCAATCAAGTTCTTCAGCTGCAGAACTGGGCAAGTTTCTTAACAGGCAATCAAGCTTGAAGTTAACTGAAAGAACTAATAATAGCAATGCTGCTGATTCTGATGAGCCTAAGGAGCATTTTAATAGTCGATTCCAGCGCAGCGCAAGTGTGGTTCTTAGTCGAGGGAAAGATGTCAATTGCTTGGAGAACACAAACACTGCCATCGGAAAGAAGTACTCATTGTCTTTTCTTCTGAAAAAAATGTTTGTTTGCAGTAGTGGGTTTGCACCACCAGTTGCTGCTCCTGCTCTAAGAGATCCAATCCCTGAATCAAGAATGGAGAAGTTATTGAGGGCTATTCTTCACAAGAAGATCTATCCCCAGCAAAGTTCAAATTCAACAGTTTCCAAGAAAAAGTACTTGGAGAACAGACACATCACTAAGTCTGTCACTGCCACTGAGGAGCAACTAGATCCTAAACGAGACGATTCAGACTCGGATGACGATGGAAGTAAATGGGACAAGACTGATTCTGAATACATCGTTTTAGAGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

32.45

Weight (kDa)

6.6

Isoelectric Point (pI)

49.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09000
prunus_persica Prupe.7G195900_v2.0.a1
rosa_laevigata RLG00000016565
rosa_multiflora Rmu_co8252679.1_g000001
rosa_rugosa Rorug02G0050800
rosa_samantha Rh2AG099000 Rh2BG100200 Rh2CG102300 Rh2DG099800
rosa_wichuraiana Rw2G007480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 272
AclWI GGATC 3 cut(s) 242, 617, 773
AcsI RAATTY 1 cut(s) 700
AcuI CTGAAG 1 cut(s) 324
AdeI CACNNNGTG 1 cut(s) 112
AfaI GTAC 3 cut(s) 255, 542, 725
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 6 cut(s) 88, 301, 313, 385, 699, 705
AjuI GAANNNNNNNTTGG 2 cut(s) 710, 742
AluBI AGCT 4 cut(s) 36, 52, 344, 381
AluI AGCT 4 cut(s) 36, 52, 344, 381
Alw26I GTCTC 1 cut(s) 783
AlwI GGATC 3 cut(s) 242, 617, 773
AlwNI CAGNNNCTG 1 cut(s) 605
AoxI GGCC 2 cut(s) 6, 152
ApeKI GCWGC 4 cut(s) 344, 416, 465, 605
ApoI RAATTY 1 cut(s) 700
Asp700I GAANNNNTTC 1 cut(s) 305
AspLEI GCGC 2 cut(s) 465, 470
AspS9I GGNCC 1 cut(s) 7
AxyI CCTNAGG 1 cut(s) 435
BbvI GCAGC 4 cut(s) 331, 403, 477, 592
BccI CCATC 2 cut(s) 536, 806
BclI TGATCA 2 cut(s) 103, 325
BcoDI GTCTC 1 cut(s) 783
BfaI CTAG 2 cut(s) 243, 776
BfmI CTRYAG 1 cut(s) 345
BglII AGATCT 2 cut(s) 208, 678
BisI GCNGC 4 cut(s) 345, 417, 466, 606
BlsI GCNGC 4 cut(s) 346, 418, 467, 607
BmcAI AGTACT 2 cut(s) 542, 725
BmgT120I GGNCC 1 cut(s) 7
BmrI ACTGGG 2 cut(s) 66, 362
BmsI GCATC 1 cut(s) 30
BmuI ACTGGG 2 cut(s) 66, 362
BplI GAGNNNNNCTC 2 cut(s) 287, 319
BsaBI GATNNNNATC 1 cut(s) 102
Bse1I ACTGG 3 cut(s) 61, 357, 599
Bse21I CCTNAGG 1 cut(s) 435
Bse3DI GCAATG 1 cut(s) 418
Bse8I GATNNNNATC 1 cut(s) 102
BseGI GGATG 2 cut(s) 45, 811
BseJI GATNNNNATC 1 cut(s) 102
BseMI GCAATG 1 cut(s) 418
BseMII CTCAG 1 cut(s) 756
BseNI ACTGG 3 cut(s) 61, 357, 599
BseRI GAGGAG 1 cut(s) 782
BseXI GCAGC 4 cut(s) 331, 403, 477, 592
BseYI CCCAGC 2 cut(s) 9, 687
BshFI GGCC 2 cut(s) 8, 154
BslFI GGGAC 1 cut(s) 839
BsmAI GTCTC 1 cut(s) 783
BsmBI CGTCTC 1 cut(s) 783
BsmFI GGGAC 1 cut(s) 839
BsnI GGCC 2 cut(s) 8, 154
Bsp1407I TGTACA 1 cut(s) 253
Bsp143I GATC 8 cut(s) 103, 133, 208, 247, 325, 622, 678, 778
BspACI CCGC 1 cut(s) 272
BspANI GGCC 2 cut(s) 8, 154
BspCNI CTCAG 1 cut(s) 757
BspHI TCATGA 1 cut(s) 193
BspMAI CTGCAG 1 cut(s) 349
BspPI GGATC 3 cut(s) 242, 617, 773
BsrDI GCAATG 1 cut(s) 418
BsrGI TGTACA 1 cut(s) 253
BsrI ACTGG 3 cut(s) 61, 357, 599
BssMI GATC 8 cut(s) 103, 133, 208, 247, 325, 622, 678, 778
Bst4CI ACNGT 3 cut(s) 93, 165, 709
BstAUI TGTACA 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 5 cut(s) 435, 482, 617, 747, 765
BstF5I GGATG 2 cut(s) 45, 811
BstHHI GCGC 2 cut(s) 465, 470
BstKTI GATC 8 cut(s) 106, 136, 211, 250, 328, 625, 681, 781
BstMAI GTCTC 1 cut(s) 783
BstMBI GATC 8 cut(s) 103, 133, 208, 247, 325, 622, 678, 778
BstMWI GCNNNNNNNGC 3 cut(s) 49, 439, 611
BstNSI RCATGY 2 cut(s) 218, 323
BstSFI CTRYAG 1 cut(s) 345
BstV1I GCAGC 4 cut(s) 331, 403, 477, 592
BstX2I RGATCY 5 cut(s) 208, 247, 622, 678, 778
BstYI RGATCY 5 cut(s) 208, 247, 622, 678, 778
Bsu36I CCTNAGG 1 cut(s) 435
BsuRI GGCC 2 cut(s) 8, 154
BtsCI GGATG 2 cut(s) 45, 811
BtsI GCAGTG 2 cut(s) 522, 756
BtsIMutI CAGTG 3 cut(s) 522, 756, 762
Cac8I GCNNGC 1 cut(s) 50
CaiI CAGNNNCTG 1 cut(s) 605
CciI TCATGA 1 cut(s) 193
CfoI GCGC 2 cut(s) 465, 470
Cfr13I GGNCC 1 cut(s) 7
Csp6I GTAC 3 cut(s) 254, 541, 724
CviAII CATG 6 cut(s) 158, 194, 215, 219, 257, 320
CviQI GTAC 3 cut(s) 254, 541, 724
DdeI CTNAG 5 cut(s) 435, 482, 617, 747, 765
DpnI GATC 8 cut(s) 105, 135, 210, 249, 327, 624, 680, 780
DpnII GATC 8 cut(s) 103, 133, 208, 247, 325, 622, 678, 778
DraIII CACNNNGTG 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 324
Eco81I CCTNAGG 1 cut(s) 435
EcoT22I ATGCAT 1 cut(s) 220
Esp3I CGTCTC 1 cut(s) 783
FaeI CATG 6 cut(s) 161, 197, 218, 222, 260, 323
FaqI GGGAC 1 cut(s) 839
FatI CATG 6 cut(s) 157, 193, 214, 218, 256, 319
FbaI TGATCA 2 cut(s) 103, 325
Fnu4HI GCNGC 4 cut(s) 345, 417, 466, 606
FokI GGATG 2 cut(s) 52, 818
Fsp4HI GCNGC 4 cut(s) 345, 417, 466, 606
FspBI CTAG 2 cut(s) 243, 776
GlaI GCGC 2 cut(s) 464, 469
GluI GCNGC 4 cut(s) 345, 417, 466, 606
GsaI CCCAGC 2 cut(s) 13, 691
HaeIII GGCC 2 cut(s) 8, 154
HhaI GCGC 2 cut(s) 465, 470
Hin1II CATG 6 cut(s) 161, 197, 218, 222, 260, 323
Hin6I GCGC 2 cut(s) 463, 468
HinP1I GCGC 2 cut(s) 463, 468
HincII GTYRAC 2 cut(s) 168, 390
HindII GTYRAC 2 cut(s) 168, 390
HindIII AAGCTT 2 cut(s) 50, 379
HinfI GANTC 7 cut(s) 197, 422, 456, 635, 794, 800, 836
HpaI GTTAAC 1 cut(s) 390
Hpy166II GTNNAC 2 cut(s) 168, 390
Hpy188I TCNGA 7 cut(s) 291, 427, 533, 561, 799, 805, 841
Hpy188III TCNNGA 2 cut(s) 194, 639
Hpy8I GTNNAC 2 cut(s) 168, 390
HpyCH4III ACNGT 3 cut(s) 93, 165, 709
HpyCH4V TGCA 6 cut(s) 43, 115, 218, 347, 579, 593
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 439, 611
HpyF3I CTNAG 5 cut(s) 435, 482, 617, 747, 765
Hsp92II CATG 6 cut(s) 161, 197, 218, 222, 260, 323
HspAI GCGC 2 cut(s) 463, 468
Ksp22I TGATCA 2 cut(s) 103, 325
KspAI GTTAAC 1 cut(s) 390
Kzo9I GATC 8 cut(s) 103, 133, 208, 247, 325, 622, 678, 778
LmnI GCTCC 3 cut(s) 439, 613, 769
Lsp1109I GCAGC 4 cut(s) 331, 403, 477, 592
LweI GCATC 1 cut(s) 30
MaeI CTAG 2 cut(s) 243, 776
MaeIII GTNAC 1 cut(s) 754
MalI GATC 8 cut(s) 105, 135, 210, 249, 327, 624, 680, 780
MboI GATC 8 cut(s) 103, 133, 208, 247, 325, 622, 678, 778
MboII GAAGA 7 cut(s) 143, 218, 301, 330, 548, 659, 688
MfeI CAATTG 2 cut(s) 171, 502
MflI RGATCY 5 cut(s) 208, 247, 622, 678, 778
MluCI AATT 4 cut(s) 141, 171, 502, 700
MlyI GAGTC 1 cut(s) 794
MnlI CCTC 7 cut(s) 29, 132, 165, 247, 482, 651, 760
Mph1103I ATGCAT 1 cut(s) 220
MroXI GAANNNNTTC 1 cut(s) 305
MseI TTAA 4 cut(s) 72, 366, 389, 447
MspA1I CMGCKG 3 cut(s) 36, 272, 344
MteI GCGCNGCGC 1 cut(s) 466
MunI CAATTG 2 cut(s) 171, 502
MwoI GCNNNNNNNGC 3 cut(s) 49, 439, 611
NdeII GATC 8 cut(s) 103, 133, 208, 247, 325, 622, 678, 778
NlaIII CATG 6 cut(s) 161, 197, 218, 222, 260, 323
NmuCI GTSAC 1 cut(s) 754
NsiI ATGCAT 1 cut(s) 220
NspI RCATGY 2 cut(s) 218, 323
PagI TCATGA 1 cut(s) 193
PciI ACATGT 1 cut(s) 319
PdmI GAANNNNTTC 1 cut(s) 305
PfeI GAWTC 6 cut(s) 197, 422, 456, 635, 794, 836
PkrI GCNGC 4 cut(s) 346, 418, 467, 607
PleI GAGTC 1 cut(s) 794
PpsI GAGTC 1 cut(s) 794
PscI ACATGT 1 cut(s) 319
PspFI CCCAGC 2 cut(s) 9, 687
PspPI GGNCC 1 cut(s) 7
PstI CTGCAG 1 cut(s) 349
PstNI CAGNNNCTG 1 cut(s) 605
PsuI RGATCY 5 cut(s) 208, 247, 622, 678, 778
PvuII CAGCTG 2 cut(s) 36, 344
RsaI GTAC 3 cut(s) 255, 542, 725
RsaNI GTAC 3 cut(s) 254, 541, 724
SaqAI TTAA 4 cut(s) 72, 366, 389, 447
SatI GCNGC 4 cut(s) 345, 417, 466, 606
Sau3AI GATC 8 cut(s) 103, 133, 208, 247, 325, 622, 678, 778
Sau96I GGNCC 1 cut(s) 7
ScaI AGTACT 2 cut(s) 542, 725
SchI GAGTC 1 cut(s) 794
SetI ASST 6 cut(s) 21, 38, 54, 124, 346, 383
SfaNI GCATC 1 cut(s) 30
SfcI CTRYAG 1 cut(s) 345
Sse9I AATT 4 cut(s) 141, 171, 502, 700
SsiI CCGC 1 cut(s) 272
SspMI CTAG 2 cut(s) 243, 776
TaaI ACNGT 3 cut(s) 93, 165, 709
TaqI TCGA 2 cut(s) 454, 487
TasI AATT 4 cut(s) 141, 171, 502, 700
TatI WGTACW 3 cut(s) 253, 540, 723
TfiI GAWTC 6 cut(s) 197, 422, 456, 635, 794, 836
Tru1I TTAA 4 cut(s) 72, 366, 389, 447
Tru9I TTAA 4 cut(s) 72, 366, 389, 447
TscAI CASTG 3 cut(s) 529, 763, 769
TseFI GTSAC 1 cut(s) 754
TseI GCWGC 4 cut(s) 344, 416, 465, 605
Tsp45I GTSAC 1 cut(s) 754
TspDTI ATGAA 2 cut(s) 210, 330
TspRI CASTG 3 cut(s) 529, 763, 769
XapI RAATTY 1 cut(s) 700
XceI RCATGY 2 cut(s) 218, 323
XcmI CCANNNNNNNNNTGG 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 305
XspI CTAG 2 cut(s) 243, 776
ZrmI AGTACT 2 cut(s) 542, 725
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.