Rh2CG102300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0018345
Physical Location & Seq
Forward (+)
8834737 .. 8836456
1720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG102300.1

Sequence Viewer

Length: 843 bp
ATGAAGATATTCAGCTGGATGCAAAGCAAGCTTACTGGGAAACCCCAGATTAAGAAACCAAACTTGAAACTGTTTGATGATGATCACAAAGTGCAAAAACCTCCCAAAGAAGATCAACCAATTAGTGAATGGCCTCATGGACTGTTGACAATTGGAACATTAGGAAGTAATCATGAATCAAAAGAAGATCTACATGCATGGGCTAATCCACCACCCTCCCCTAGAGATCCTGTACATGATTTTACACCAGCGGAAGCAACACACATTCAGAATGAGTTGAACTCATTCTTCAATGAACATGTTGATCAATCAAGTTCTTCAGCTGCAGAACTGGGCAAGTTTCTTAACAGGCAATCAAGCTTGAAGTTAACTGAAAGAACTAATAATAGCAATGCTGCTGATTCTGATGAGCCTAAGGAGCATTTTAATAGTCGATTCCAGCGCAGCGCAAGTGTGGTTCTTAGTCGAGGGAAAGATGTCAATTGCTTGGAGAACACAAACACTGCCATCGGAAAGAAGTACTCATTGTCTTTTCTTCTGAAAAAAATGTTTGTTTGCAGTAGTGGGTTTGCACCACCAGTTGCTGCTCCTGCTCTAAGAGATCCAATCCCTGAATCAAGAATGGAGAAGTTATTGAGGGCTATTCTTCACAAGAAGATCTATCCCCAGCAAAGTTCAAATTCAACAGTTTCCAAGAAAAAGTACTTGGAGAACAGACACATCACTAAGTCTGTCACTGCCACTGAGGAGCAACTAGATCCTAAACGAGACGATTCAGACTCGGATGACGATGGAAGTAAATGGGACAAGACTGATTCTGAATACATCGTTTTAGAGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

280

Amino Acids

31.59

Weight (kDa)

6.8

Isoelectric Point (pI)

47.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09000
prunus_persica Prupe.7G195900_v2.0.a1
rosa_laevigata RLG00000016565
rosa_multiflora Rmu_co8252679.1_g000001
rosa_rugosa Rorug02G0050800
rosa_samantha Rh2AG099000 Rh2BG100200 Rh2CG102300 Rh2DG099800
rosa_wichuraiana Rw2G007480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 251
AclWI GGATC 3 cut(s) 221, 596, 752
AcsI RAATTY 1 cut(s) 679
AcuI CTGAAG 1 cut(s) 303
AdeI CACNNNGTG 1 cut(s) 91
AfaI GTAC 3 cut(s) 234, 521, 704
AflIII ACRYGT 1 cut(s) 298
AgsI TTSAA 6 cut(s) 67, 280, 292, 364, 678, 684
AjuI GAANNNNNNNTTGG 2 cut(s) 689, 721
AluBI AGCT 4 cut(s) 15, 31, 323, 360
AluI AGCT 4 cut(s) 15, 31, 323, 360
Alw26I GTCTC 1 cut(s) 762
AlwI GGATC 3 cut(s) 221, 596, 752
AlwNI CAGNNNCTG 1 cut(s) 584
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 4 cut(s) 323, 395, 444, 584
ApoI RAATTY 1 cut(s) 679
Asp700I GAANNNNTTC 2 cut(s) 8, 284
AspLEI GCGC 2 cut(s) 444, 449
AxyI CCTNAGG 1 cut(s) 414
BbvI GCAGC 4 cut(s) 310, 382, 456, 571
BccI CCATC 2 cut(s) 515, 785
BclI TGATCA 2 cut(s) 82, 304
BcoDI GTCTC 1 cut(s) 762
BfaI CTAG 2 cut(s) 222, 755
BfmI CTRYAG 1 cut(s) 324
BglII AGATCT 2 cut(s) 187, 657
BisI GCNGC 4 cut(s) 324, 396, 445, 585
BlsI GCNGC 4 cut(s) 325, 397, 446, 586
BmcAI AGTACT 2 cut(s) 521, 704
BmrI ACTGGG 2 cut(s) 45, 341
BmsI GCATC 1 cut(s) 9
BmuI ACTGGG 2 cut(s) 45, 341
BplI GAGNNNNNCTC 2 cut(s) 266, 298
BsaBI GATNNNNATC 1 cut(s) 81
Bse1I ACTGG 3 cut(s) 40, 336, 578
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 1 cut(s) 397
Bse8I GATNNNNATC 1 cut(s) 81
BseGI GGATG 2 cut(s) 24, 790
BseJI GATNNNNATC 1 cut(s) 81
BseMI GCAATG 1 cut(s) 397
BseMII CTCAG 1 cut(s) 735
BseNI ACTGG 3 cut(s) 40, 336, 578
BseRI GAGGAG 1 cut(s) 761
BseXI GCAGC 4 cut(s) 310, 382, 456, 571
BseYI CCCAGC 1 cut(s) 666
BshFI GGCC 1 cut(s) 133
BslFI GGGAC 1 cut(s) 818
BsmAI GTCTC 1 cut(s) 762
BsmBI CGTCTC 1 cut(s) 762
BsmFI GGGAC 1 cut(s) 818
BsnI GGCC 1 cut(s) 133
Bsp1407I TGTACA 1 cut(s) 232
Bsp143I GATC 8 cut(s) 82, 112, 187, 226, 304, 601, 657, 757
BspACI CCGC 1 cut(s) 251
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 736
BspHI TCATGA 1 cut(s) 172
BspMAI CTGCAG 1 cut(s) 328
BspPI GGATC 3 cut(s) 221, 596, 752
BsrDI GCAATG 1 cut(s) 397
BsrGI TGTACA 1 cut(s) 232
BsrI ACTGG 3 cut(s) 40, 336, 578
BssMI GATC 8 cut(s) 82, 112, 187, 226, 304, 601, 657, 757
Bst4CI ACNGT 3 cut(s) 72, 144, 688
BstAUI TGTACA 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 5 cut(s) 414, 461, 596, 726, 744
BstF5I GGATG 2 cut(s) 24, 790
BstHHI GCGC 2 cut(s) 444, 449
BstKTI GATC 8 cut(s) 85, 115, 190, 229, 307, 604, 660, 760
BstMAI GTCTC 1 cut(s) 762
BstMBI GATC 8 cut(s) 82, 112, 187, 226, 304, 601, 657, 757
BstMWI GCNNNNNNNGC 3 cut(s) 28, 418, 590
BstNSI RCATGY 2 cut(s) 197, 302
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 4 cut(s) 310, 382, 456, 571
BstX2I RGATCY 5 cut(s) 187, 226, 601, 657, 757
BstYI RGATCY 5 cut(s) 187, 226, 601, 657, 757
Bsu36I CCTNAGG 1 cut(s) 414
BsuRI GGCC 1 cut(s) 133
BtsCI GGATG 2 cut(s) 24, 790
BtsI GCAGTG 2 cut(s) 501, 735
BtsIMutI CAGTG 3 cut(s) 501, 735, 741
Cac8I GCNNGC 1 cut(s) 29
CaiI CAGNNNCTG 1 cut(s) 584
CciI TCATGA 1 cut(s) 172
CfoI GCGC 2 cut(s) 444, 449
Csp6I GTAC 3 cut(s) 233, 520, 703
CviAII CATG 6 cut(s) 137, 173, 194, 198, 236, 299
CviJI RGCY 8 cut(s) 15, 31, 133, 203, 323, 360, 412, 641
CviKI_1 RGCY 8 cut(s) 15, 31, 133, 203, 323, 360, 412, 641
CviQI GTAC 3 cut(s) 233, 520, 703
DdeI CTNAG 5 cut(s) 414, 461, 596, 726, 744
DpnI GATC 8 cut(s) 84, 114, 189, 228, 306, 603, 659, 759
DpnII GATC 8 cut(s) 82, 112, 187, 226, 304, 601, 657, 757
DraIII CACNNNGTG 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 303
Eco81I CCTNAGG 1 cut(s) 414
EcoT22I ATGCAT 1 cut(s) 199
Esp3I CGTCTC 1 cut(s) 762
FaeI CATG 6 cut(s) 140, 176, 197, 201, 239, 302
FaiI YATR 7 cut(s) 138, 174, 195, 199, 237, 300, 841
FaqI GGGAC 1 cut(s) 818
FatI CATG 6 cut(s) 136, 172, 193, 197, 235, 298
FbaI TGATCA 2 cut(s) 82, 304
Fnu4HI GCNGC 4 cut(s) 324, 396, 445, 585
FokI GGATG 2 cut(s) 31, 797
Fsp4HI GCNGC 4 cut(s) 324, 396, 445, 585
FspBI CTAG 2 cut(s) 222, 755
GlaI GCGC 2 cut(s) 443, 448
GluI GCNGC 4 cut(s) 324, 396, 445, 585
GsaI CCCAGC 1 cut(s) 670
HaeIII GGCC 1 cut(s) 133
HhaI GCGC 2 cut(s) 444, 449
Hin1II CATG 6 cut(s) 140, 176, 197, 201, 239, 302
Hin6I GCGC 2 cut(s) 442, 447
HinP1I GCGC 2 cut(s) 442, 447
HincII GTYRAC 2 cut(s) 147, 369
HindII GTYRAC 2 cut(s) 147, 369
HindIII AAGCTT 2 cut(s) 29, 358
HinfI GANTC 7 cut(s) 176, 401, 435, 614, 773, 779, 815
HpaI GTTAAC 1 cut(s) 369
Hpy166II GTNNAC 2 cut(s) 147, 369
Hpy188I TCNGA 7 cut(s) 270, 406, 512, 540, 778, 784, 820
Hpy188III TCNNGA 2 cut(s) 173, 618
Hpy8I GTNNAC 2 cut(s) 147, 369
HpyCH4III ACNGT 3 cut(s) 72, 144, 688
HpyCH4V TGCA 6 cut(s) 22, 94, 197, 326, 558, 572
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 418, 590
HpyF3I CTNAG 5 cut(s) 414, 461, 596, 726, 744
Hsp92II CATG 6 cut(s) 140, 176, 197, 201, 239, 302
HspAI GCGC 2 cut(s) 442, 447
Ksp22I TGATCA 2 cut(s) 82, 304
KspAI GTTAAC 1 cut(s) 369
Kzo9I GATC 8 cut(s) 82, 112, 187, 226, 304, 601, 657, 757
LmnI GCTCC 3 cut(s) 418, 592, 748
Lsp1109I GCAGC 4 cut(s) 310, 382, 456, 571
LweI GCATC 1 cut(s) 9
MaeI CTAG 2 cut(s) 222, 755
MaeIII GTNAC 1 cut(s) 733
MalI GATC 8 cut(s) 84, 114, 189, 228, 306, 603, 659, 759
MboI GATC 8 cut(s) 82, 112, 187, 226, 304, 601, 657, 757
MboII GAAGA 8 cut(s) 16, 122, 197, 280, 309, 527, 638, 667
MfeI CAATTG 2 cut(s) 150, 481
MflI RGATCY 5 cut(s) 187, 226, 601, 657, 757
MluCI AATT 4 cut(s) 120, 150, 481, 679
MlyI GAGTC 1 cut(s) 773
MnlI CCTC 6 cut(s) 111, 144, 226, 461, 630, 739
Mph1103I ATGCAT 1 cut(s) 199
MroXI GAANNNNTTC 2 cut(s) 8, 284
MseI TTAA 4 cut(s) 51, 345, 368, 426
MspA1I CMGCKG 3 cut(s) 15, 251, 323
MteI GCGCNGCGC 1 cut(s) 445
MunI CAATTG 2 cut(s) 150, 481
MwoI GCNNNNNNNGC 3 cut(s) 28, 418, 590
NdeII GATC 8 cut(s) 82, 112, 187, 226, 304, 601, 657, 757
NlaIII CATG 6 cut(s) 140, 176, 197, 201, 239, 302
NmuCI GTSAC 1 cut(s) 733
NsiI ATGCAT 1 cut(s) 199
NspI RCATGY 2 cut(s) 197, 302
PagI TCATGA 1 cut(s) 172
PciI ACATGT 1 cut(s) 298
PdmI GAANNNNTTC 2 cut(s) 8, 284
PfeI GAWTC 6 cut(s) 176, 401, 435, 614, 773, 815
PkrI GCNGC 4 cut(s) 325, 397, 446, 586
PleI GAGTC 1 cut(s) 773
PpsI GAGTC 1 cut(s) 773
PscI ACATGT 1 cut(s) 298
PspFI CCCAGC 1 cut(s) 666
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 584
PsuI RGATCY 5 cut(s) 187, 226, 601, 657, 757
PvuII CAGCTG 2 cut(s) 15, 323
RsaI GTAC 3 cut(s) 234, 521, 704
RsaNI GTAC 3 cut(s) 233, 520, 703
SaqAI TTAA 4 cut(s) 51, 345, 368, 426
SatI GCNGC 4 cut(s) 324, 396, 445, 585
Sau3AI GATC 8 cut(s) 82, 112, 187, 226, 304, 601, 657, 757
ScaI AGTACT 2 cut(s) 521, 704
SchI GAGTC 1 cut(s) 773
SetI ASST 5 cut(s) 17, 33, 103, 325, 362
SfaNI GCATC 1 cut(s) 9
SfcI CTRYAG 1 cut(s) 324
Sse9I AATT 4 cut(s) 120, 150, 481, 679
SsiI CCGC 1 cut(s) 251
SspMI CTAG 2 cut(s) 222, 755
TaaI ACNGT 3 cut(s) 72, 144, 688
TaqI TCGA 2 cut(s) 433, 466
TasI AATT 4 cut(s) 120, 150, 481, 679
TatI WGTACW 3 cut(s) 232, 519, 702
TfiI GAWTC 6 cut(s) 176, 401, 435, 614, 773, 815
Tru1I TTAA 4 cut(s) 51, 345, 368, 426
Tru9I TTAA 4 cut(s) 51, 345, 368, 426
TscAI CASTG 3 cut(s) 508, 742, 748
TseFI GTSAC 1 cut(s) 733
TseI GCWGC 4 cut(s) 323, 395, 444, 584
Tsp45I GTSAC 1 cut(s) 733
TspDTI ATGAA 3 cut(s) 17, 189, 309
TspRI CASTG 3 cut(s) 508, 742, 748
XapI RAATTY 1 cut(s) 679
XceI RCATGY 2 cut(s) 197, 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 126
XmnI GAANNNNTTC 2 cut(s) 8, 284
XspI CTAG 2 cut(s) 222, 755
ZrmI AGTACT 2 cut(s) 521, 704
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.