Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8252679.1

Orthogroup ID

OG0018345

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 658

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8252679.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgcaaagcaagcttactgggaaaccccagattaagaaaccaaacttgaaactgtttgatgatgatcacaaagtgcaaaaacctcccaaagaagatcaaccaattagtgaatggcctcatggactgttgacaattggaacattaggaagtaatcatgaatcaaaagaagatctacatgcatgggctaatccaccaccctcccctagagatcctctacatgattttacaccagcggaagcaacacacattcagaatgagttgaactcattcttcaatgaacatgttgatcaatcaagttcttcagctgcagaactgggcaagtttcttaacaggcaatcaagcttgaagttatctgaaagaactaataatagcaatgctgctgattctgatgagcctaaggagcattttaatcgtcgattccagcgcagcgcaagtgtggttcttagtcgagggaaagatgtcaattgcttggagaacacaaacactgccatcggaaagaagtcattgacttttcttctgaaaaaaatgtttgtttgcagtagtgggtttgcagcaccagttgctgctcctgctcta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.27

Weight (kDa)

7.84

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018345)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09000
prunus_persica	Prupe.7G195900_v2.0.a1
rosa_laevigata	RLG00000016565
rosa_multiflora	Rmu_co8252679.1_g000001
rosa_rugosa	Rorug02G0050800
rosa_samantha	Rh2AG099000 Rh2BG100200 Rh2CG102300 Rh2DG099800
rosa_wichuraiana	Rw2G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	285
AdeI	CACNNNGTG	1 cut(s)	73
AflIII	ACRYGT	1 cut(s)	280
AgsI	TTSAA	4 cut(s)	49, 262, 274, 346
AluBI	AGCT	3 cut(s)	13, 305, 342
AluI	AGCT	3 cut(s)	13, 305, 342
AlwI	GGATC	1 cut(s)	203
AlwNI	CAGNNNCTG	1 cut(s)	563
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	5 cut(s)	305, 377, 426, 551, 563
Asp700I	GAANNNNTTC	1 cut(s)	266
AspLEI	GCGC	2 cut(s)	426, 431
AxyI	CCTNAGG	1 cut(s)	396
BbvI	GCAGC	5 cut(s)	292, 364, 438, 550, 563
BccI	CCATC	1 cut(s)	497
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BclI	TGATCA	2 cut(s)	64, 286
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	1 cut(s)	306
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	5 cut(s)	306, 378, 427, 552, 564
BlsI	GCNGC	5 cut(s)	307, 379, 428, 553, 565
BmrI	ACTGGG	2 cut(s)	27, 323
BmuI	ACTGGG	2 cut(s)	27, 323
BplI	GAGNNNNNCTC	2 cut(s)	248, 280
BsaBI	GATNNNNATC	1 cut(s)	63
Bse1I	ACTGG	3 cut(s)	22, 318, 557
Bse21I	CCTNAGG	1 cut(s)	396
Bse3DI	GCAATG	1 cut(s)	379
Bse8I	GATNNNNATC	1 cut(s)	63
BseJI	GATNNNNATC	1 cut(s)	63
BseMI	GCAATG	1 cut(s)	379
BseNI	ACTGG	3 cut(s)	22, 318, 557
BseXI	GCAGC	5 cut(s)	292, 364, 438, 550, 563
BshFI	GGCC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	115
Bsp143I	GATC	5 cut(s)	64, 94, 169, 208, 286
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	1 cut(s)	115
BspHI	TCATGA	1 cut(s)	154
BspMAI	CTGCAG	1 cut(s)	310
BspPI	GGATC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	379
BsrI	ACTGG	3 cut(s)	22, 318, 557
BssMI	GATC	5 cut(s)	64, 94, 169, 208, 286
Bst4CI	ACNGT	2 cut(s)	54, 126
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	2 cut(s)	396, 443
BstHHI	GCGC	2 cut(s)	426, 431
BstKTI	GATC	5 cut(s)	67, 97, 172, 211, 289
BstMBI	GATC	5 cut(s)	64, 94, 169, 208, 286
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 400, 560, 569
BstNSI	RCATGY	2 cut(s)	179, 284
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	5 cut(s)	292, 364, 438, 550, 563
BstX2I	RGATCY	2 cut(s)	169, 208
BstYI	RGATCY	2 cut(s)	169, 208
Bsu36I	CCTNAGG	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	115
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	1 cut(s)	483
Cac8I	GCNNGC	1 cut(s)	11
CaiI	CAGNNNCTG	1 cut(s)	563
CciI	TCATGA	1 cut(s)	154
CfoI	GCGC	2 cut(s)	426, 431
CviAII	CATG	6 cut(s)	119, 155, 176, 180, 218, 281
CviJI	RGCY	6 cut(s)	13, 115, 185, 305, 342, 394
CviKI_1	RGCY	6 cut(s)	13, 115, 185, 305, 342, 394
DdeI	CTNAG	2 cut(s)	396, 443
DpnI	GATC	5 cut(s)	66, 96, 171, 210, 288
DpnII	GATC	5 cut(s)	64, 94, 169, 208, 286
DraIII	CACNNNGTG	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	285
Eco81I	CCTNAGG	1 cut(s)	396
EcoT22I	ATGCAT	1 cut(s)	181
FaeI	CATG	6 cut(s)	122, 158, 179, 183, 221, 284
FaiI	YATR	6 cut(s)	120, 156, 177, 181, 219, 282
FatI	CATG	6 cut(s)	118, 154, 175, 179, 217, 280
FbaI	TGATCA	2 cut(s)	64, 286
Fnu4HI	GCNGC	5 cut(s)	306, 378, 427, 552, 564
Fsp4HI	GCNGC	5 cut(s)	306, 378, 427, 552, 564
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	2 cut(s)	425, 430
GluI	GCNGC	5 cut(s)	306, 378, 427, 552, 564
HaeIII	GGCC	1 cut(s)	115
HhaI	GCGC	2 cut(s)	426, 431
Hin1II	CATG	6 cut(s)	122, 158, 179, 183, 221, 284
Hin6I	GCGC	2 cut(s)	424, 429
HinP1I	GCGC	2 cut(s)	424, 429
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HindIII	AAGCTT	2 cut(s)	11, 340
HinfI	GANTC	3 cut(s)	158, 383, 417
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	5 cut(s)	252, 355, 388, 494, 519
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	1 cut(s)	129
Hpy99I	CGWCG	1 cut(s)	417
HpyCH4III	ACNGT	2 cut(s)	54, 126
HpyCH4V	TGCA	6 cut(s)	4, 76, 179, 308, 537, 551
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 400, 560, 569
HpyF3I	CTNAG	2 cut(s)	396, 443
Hsp92II	CATG	6 cut(s)	122, 158, 179, 183, 221, 284
HspAI	GCGC	2 cut(s)	424, 429
Ksp22I	TGATCA	2 cut(s)	64, 286
Kzo9I	GATC	5 cut(s)	64, 94, 169, 208, 286
LmnI	GCTCC	2 cut(s)	400, 571
LpnPI	CCDG	7 cut(s)	3, 41, 243, 299, 316, 434, 570
Lsp1109I	GCAGC	5 cut(s)	292, 364, 438, 550, 563
MaeI	CTAG	1 cut(s)	204
MalI	GATC	5 cut(s)	66, 96, 171, 210, 288
MboI	GATC	5 cut(s)	64, 94, 169, 208, 286
MboII	GAAGA	5 cut(s)	104, 179, 262, 291, 506
MfeI	CAATTG	2 cut(s)	132, 463
MflI	RGATCY	2 cut(s)	169, 208
MluCI	AATT	3 cut(s)	102, 132, 463
MnlI	CCTC	5 cut(s)	93, 126, 208, 222, 443
Mph1103I	ATGCAT	1 cut(s)	181
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	3 cut(s)	33, 327, 408
MspA1I	CMGCKG	2 cut(s)	233, 305
MteI	GCGCNGCGC	1 cut(s)	427
MunI	CAATTG	2 cut(s)	132, 463
MwoI	GCNNNNNNNGC	4 cut(s)	10, 400, 560, 569
NdeII	GATC	5 cut(s)	64, 94, 169, 208, 286
NlaIII	CATG	6 cut(s)	122, 158, 179, 183, 221, 284
NsiI	ATGCAT	1 cut(s)	181
NspI	RCATGY	2 cut(s)	179, 284
PagI	TCATGA	1 cut(s)	154
PciI	ACATGT	1 cut(s)	280
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	3 cut(s)	158, 383, 417
PkrI	GCNGC	5 cut(s)	307, 379, 428, 553, 565
PscI	ACATGT	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	310
PstNI	CAGNNNCTG	1 cut(s)	563
PsuI	RGATCY	2 cut(s)	169, 208
PvuII	CAGCTG	1 cut(s)	305
SaqAI	TTAA	3 cut(s)	33, 327, 408
SatI	GCNGC	5 cut(s)	306, 378, 427, 552, 564
Sau3AI	GATC	5 cut(s)	64, 94, 169, 208, 286
SetI	ASST	4 cut(s)	15, 85, 307, 344
SfcI	CTRYAG	1 cut(s)	306
Sse9I	AATT	3 cut(s)	102, 132, 463
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	54, 126
TaqI	TCGA	2 cut(s)	415, 448
TasI	AATT	3 cut(s)	102, 132, 463
TfiI	GAWTC	3 cut(s)	158, 383, 417
Tru1I	TTAA	3 cut(s)	33, 327, 408
Tru9I	TTAA	3 cut(s)	33, 327, 408
TscAI	CASTG	1 cut(s)	490
TseI	GCWGC	5 cut(s)	305, 377, 426, 551, 563
TspDTI	ATGAA	2 cut(s)	171, 291
TspRI	CASTG	1 cut(s)	490
XceI	RCATGY	2 cut(s)	179, 284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	1 cut(s)	204
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.