FvH4_1g09330
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0006902
Physical Location & Seq
Forward (+)
5001025 .. 5003062
2038 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09330.t1

Sequence Viewer

Length: 1131 bp
ATGGCTAATGAGAATAGCCCAGCCAAGCCACCGCCGTGGTTCATTTTCCGTCCAACTGATACTAGGCTTATCCGGACTTTCCTAATCCCCAGAATTCGAGGACAAGATCTACCGATGAACGATTTTGCACGGAGAGATGTGTTCGCTGATCCACCTTTGGACCTCGCAATAGCCGAAGGCTATAGCGAGGAAAAACAGGAGATCTACTTCTTTAATCAAACAAGCAGAAGGACTCCACACTGGAAACCAACTCACAGAAGTGAAGATCTCATCAAAAGTGGAGATACAGTTATTGGAAGAAAAAAGAAGTTTTACCATGCACAGAATCCTGGTAAAACCATCAAGTGGTACCTTGATCAGTACACAGCCGAAGGCGAGAACAGTGACGTAGCAGTGTATAAGCTCCACACTGGCAGAGAACCTGCTCAAAGCCTTTATACAGCTGAAGCCCAGAATCAAAACCTTACTGTTCCCCCTCCACAGAGTGGGTCTTCATTACTGCCTGTCCTTCCATGTAACCCCCCACTACTCCAGCAGGAATATTCACAATGGAACCACTCACTACAACACAATGGGTCATCACCCCTGCTCCAACAAGCATATTCACCATGGAACCCAATGGATCTGCAAGCCTTTTCACAATGGAACGAGTCACTACCTCAACACAATGGCTCTTCGGCTCTGCCTCTCCCTGAATGGAACCCCCCACTTCCATACAATGGGTTGTCATCACTCCCTCTCCCTCAAGGGAACCCCCCATTTCTTCAGCAAGACAACACCCAAACAGGTTTTCCTACAGATGGGTCAGCAGTCCTGTCTTTCCCTACACAACAATACGTTTTTCAACCTGAAGACTCGGGTCAACATCTCCAGGAAGCCTCTACAGCAGGGAACCCCGTACTCCAAGATGGCTCTGCATTGCCGCCTTACCCTTCACAGCAAGATGCTTTTCAACCTGAAGACTCAGGTCACCTTGGTTCCCAGCAGATACTGCATGCCAACATACAAGGAAATCCCCAAAATATTTTTTGGTCTGATTTTTACCAGTATTATCTCACGCAGCTTCACAACAACCCAAATGCAAATACCAACAATGATCAGCCTTCTTCTTCAAACCCTCCTGAGCACTAA

Protein Analysis

377

Amino Acids

42.35

Weight (kDa)

5.21

Isoelectric Point (pI)

64.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 122 6.9e-12 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 430
Acc65I GGTACC 1 cut(s) 348
AccB1I GGYRCC 1 cut(s) 348
AccB7I CCANNNNNTGG 3 cut(s) 345, 485, 719
AccIII TCCGGA 1 cut(s) 72
AciI CCGC 2 cut(s) 32, 923
AclWI GGATC 2 cut(s) 143, 630
AcsI RAATTY 1 cut(s) 93
AcuI CTGAAG 4 cut(s) 465, 749, 870, 978
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 3 cut(s) 350, 362, 900
AfiI CCNNNNNNNGG 4 cut(s) 345, 485, 719, 800
AgsI TTSAA 3 cut(s) 845, 953, 1113
AjnI CCWGG 2 cut(s) 328, 870
AjuI GAANNNNNNNTTGG 2 cut(s) 774, 806
AleI CACNNNNGTG 2 cut(s) 34, 258
AluBI AGCT 3 cut(s) 403, 443, 1063
AluI AGCT 3 cut(s) 403, 443, 1063
Alw21I GWGCWC 1 cut(s) 1128
AlwI GGATC 2 cut(s) 143, 630
AlwNI CAGNNNCTG 1 cut(s) 991
Ama87I CYCGRG 1 cut(s) 856
Aor13HI TCCGGA 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 1060
ApoI RAATTY 1 cut(s) 93
Asp718I GGTACC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 160
AsuHPI GGTGA 3 cut(s) 573, 597, 962
AvaI CYCGRG 1 cut(s) 856
AvaII GGWCC 1 cut(s) 160
BanI GGYRCC 1 cut(s) 348
BbsI GAAGAC 3 cut(s) 483, 858, 966
Bbv12I GWGCWC 1 cut(s) 1128
BbvI GCAGC 1 cut(s) 1072
BccI CCATC 3 cut(s) 347, 794, 902
BceAI ACGGC 1 cut(s) 19
BciT130I CCWGG 2 cut(s) 330, 872
BclI TGATCA 2 cut(s) 355, 1096
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 3 cut(s) 181, 795, 882
BfuAI ACCTGC 1 cut(s) 430
BglII AGATCT 3 cut(s) 106, 201, 265
BisI GCNGC 2 cut(s) 923, 1061
BlsI GCNGC 2 cut(s) 924, 1062
Bme1390I CCNGG 2 cut(s) 330, 872
Bme18I GGWCC 1 cut(s) 160
BmeT110I CYCGRG 1 cut(s) 856
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 7 cut(s) 350, 554, 614, 701, 752, 893, 979
BmrFI CCNGG 2 cut(s) 330, 872
BmsI GCATC 1 cut(s) 934
BoxI GACNNNNGTC 2 cut(s) 858, 966
BpiI GAAGAC 3 cut(s) 483, 858, 966
BpmI CTGGAG 2 cut(s) 515, 854
Bpu10I CCTNAGC 1 cut(s) 1122
BpuEI CTTGAG 1 cut(s) 729
BsaJI CCNNGG 3 cut(s) 35, 608, 973
BsaWI WCCGGW 1 cut(s) 72
BsaXI ACNNNNNCTCC 6 cut(s) 273, 303, 573, 603, 723, 753
Bsc4I CCNNNNNNNGG 4 cut(s) 345, 485, 719, 800
Bse1I ACTGG 3 cut(s) 245, 415, 1045
Bse3DI GCAATG 1 cut(s) 917
BseAI TCCGGA 1 cut(s) 72
BseBI CCWGG 2 cut(s) 330, 872
BseDI CCNNGG 3 cut(s) 35, 608, 973
BseLI CCNNNNNNNGG 4 cut(s) 345, 485, 719, 800
BseMI GCAATG 1 cut(s) 917
BseMII CTCAG 2 cut(s) 978, 1113
BseNI ACTGG 3 cut(s) 245, 415, 1045
BseXI GCAGC 1 cut(s) 1072
BseYI CCCAGC 2 cut(s) 19, 981
BshNI GGYRCC 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 1128
BsiHKCI CYCGRG 1 cut(s) 856
BsiSI CCGG 1 cut(s) 73
BslI CCNNNNNNNGG 4 cut(s) 345, 485, 719, 800
BsoBI CYCGRG 1 cut(s) 856
Bsp1286I GDGCHC 1 cut(s) 1128
Bsp13I TCCGGA 1 cut(s) 72
Bsp143I GATC 7 cut(s) 106, 148, 201, 265, 355, 622, 1096
Bsp19I CCATGG 1 cut(s) 608
BspACI CCGC 2 cut(s) 32, 923
BspCNI CTCAG 2 cut(s) 977, 1114
BspEI TCCGGA 1 cut(s) 72
BspLI GGNNCC 7 cut(s) 350, 554, 614, 701, 752, 893, 979
BspMI ACCTGC 1 cut(s) 430
BspPI GGATC 2 cut(s) 143, 630
BspQI GCTCTTC 1 cut(s) 679
BspT107I GGYRCC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 917
BsrI ACTGG 3 cut(s) 245, 415, 1045
BssECI CCNNGG 3 cut(s) 35, 608, 973
BssMI GATC 7 cut(s) 106, 148, 201, 265, 355, 622, 1096
BssT1I CCWWGG 2 cut(s) 608, 973
Bst2UI CCWGG 2 cut(s) 330, 872
Bst4CI ACNGT 3 cut(s) 289, 383, 469
Bst6I CTCTTC 1 cut(s) 679
BstAPI GCANNNNNTGC 1 cut(s) 991
BstC8I GCNNGC 2 cut(s) 630, 996
BstDEI CTNAG 2 cut(s) 964, 1122
BstDSI CCRYGG 2 cut(s) 35, 608
BstEII GGTNACC 1 cut(s) 968
BstKTI GATC 7 cut(s) 109, 151, 204, 268, 358, 625, 1099
BstMBI GATC 7 cut(s) 106, 148, 201, 265, 355, 622, 1096
BstMWI GCNNNNNNNGC 2 cut(s) 884, 991
BstNI CCWGG 2 cut(s) 330, 872
BstNSI RCATGY 1 cut(s) 998
BstPAI GACNNNNGTC 2 cut(s) 858, 966
BstPI GGTNACC 1 cut(s) 968
BstSCI CCNGG 2 cut(s) 328, 870
BstSFI CTRYAG 3 cut(s) 181, 795, 882
BstV1I GCAGC 1 cut(s) 1072
BstV2I GAAGAC 3 cut(s) 483, 858, 966
BstX2I RGATCY 4 cut(s) 106, 201, 265, 622
BstXI CCANNNNNNTGG 1 cut(s) 36
BstYI RGATCY 4 cut(s) 106, 201, 265, 622
BtgI CCRYGG 2 cut(s) 35, 608
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 4 cut(s) 238, 388, 399, 408
BveI ACCTGC 1 cut(s) 430
Cac8I GCNNGC 2 cut(s) 630, 996
CaiI CAGNNNCTG 1 cut(s) 991
Cfr13I GGNCC 1 cut(s) 160
Csp6I GTAC 3 cut(s) 349, 361, 899
CviAII CATG 4 cut(s) 317, 513, 609, 995
CviQI GTAC 3 cut(s) 349, 361, 899
DdeI CTNAG 2 cut(s) 964, 1122
DpnI GATC 7 cut(s) 108, 150, 203, 267, 357, 624, 1098
DpnII GATC 7 cut(s) 106, 148, 201, 265, 355, 622, 1096
DraIII CACNNNGTG 1 cut(s) 485
Eam1104I CTCTTC 1 cut(s) 679
EarI CTCTTC 1 cut(s) 679
Eco130I CCWWGG 2 cut(s) 608, 973
Eco47I GGWCC 1 cut(s) 160
Eco57I CTGAAG 4 cut(s) 465, 749, 870, 978
Eco88I CYCGRG 1 cut(s) 856
Eco91I GGTNACC 1 cut(s) 968
EcoO65I GGTNACC 1 cut(s) 968
EcoRI GAATTC 1 cut(s) 93
EcoRII CCWGG 2 cut(s) 328, 870
EcoT14I CCWWGG 2 cut(s) 608, 973
ErhI CCWWGG 2 cut(s) 608, 973
FaeI CATG 4 cut(s) 320, 516, 612, 998
FatI CATG 4 cut(s) 316, 512, 608, 994
FbaI TGATCA 2 cut(s) 355, 1096
Fnu4HI GCNGC 2 cut(s) 923, 1061
Fsp4HI GCNGC 2 cut(s) 923, 1061
FspBI CTAG 1 cut(s) 63
GluI GCNGC 2 cut(s) 923, 1061
GsaI CCCAGC 2 cut(s) 23, 985
GsuI CTGGAG 2 cut(s) 515, 854
HapII CCGG 1 cut(s) 73
Hin1II CATG 4 cut(s) 320, 516, 612, 998
HincII GTYRAC 1 cut(s) 863
HindII GTYRAC 1 cut(s) 863
HinfI GANTC 6 cut(s) 232, 325, 454, 650, 854, 962
HpaII CCGG 1 cut(s) 73
HphI GGTGA 3 cut(s) 573, 597, 962
Hpy166II GTNNAC 2 cut(s) 363, 863
Hpy188I TCNGA 1 cut(s) 1036
Hpy188III TCNNGA 2 cut(s) 73, 1121
Hpy8I GTNNAC 2 cut(s) 363, 863
HpyAV CCTTC 6 cut(s) 170, 222, 365, 518, 942, 1113
HpyCH4III ACNGT 3 cut(s) 289, 383, 469
HpyCH4IV ACGT 2 cut(s) 387, 837
HpyCH4V TGCA 6 cut(s) 128, 320, 628, 917, 994, 1082
HpyF10VI GCNNNNNNNGC 2 cut(s) 884, 991
HpyF3I CTNAG 2 cut(s) 964, 1122
HpySE526I ACGT 2 cut(s) 387, 837
Hsp92II CATG 4 cut(s) 320, 516, 612, 998
Kpn2I TCCGGA 1 cut(s) 72
KpnI GGTACC 1 cut(s) 352
Ksp22I TGATCA 2 cut(s) 355, 1096
Kzo9I GATC 7 cut(s) 106, 148, 201, 265, 355, 622, 1096
LguI GCTCTTC 1 cut(s) 679
LmnI GCTCC 2 cut(s) 408, 594
Lsp1109I GCAGC 1 cut(s) 1072
LweI GCATC 1 cut(s) 934
MaeI CTAG 1 cut(s) 63
MaeII ACGT 2 cut(s) 387, 837
MaeIII GTNAC 4 cut(s) 383, 515, 651, 968
MalI GATC 7 cut(s) 108, 150, 203, 267, 357, 624, 1098
MboI GATC 7 cut(s) 106, 148, 201, 265, 355, 622, 1096
MboII GAAGA 9 cut(s) 275, 309, 483, 666, 755, 863, 971, 1098, 1101
MflI RGATCY 4 cut(s) 106, 201, 265, 622
MhlI GDGCHC 1 cut(s) 1128
MluCI AATT 1 cut(s) 93
MlyI GAGTC 4 cut(s) 226, 659, 848, 956
MmeI TCCRAC 2 cut(s) 77, 616
MroI TCCGGA 1 cut(s) 72
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 2 cut(s) 34, 258
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 2 cut(s) 330, 872
MvaI CCWGG 2 cut(s) 330, 872
MwoI GCNNNNNNNGC 2 cut(s) 884, 991
NcoI CCATGG 1 cut(s) 608
NdeII GATC 7 cut(s) 106, 148, 201, 265, 355, 622, 1096
NlaIII CATG 4 cut(s) 320, 516, 612, 998
NlaIV GGNNCC 7 cut(s) 350, 554, 614, 701, 752, 893, 979
NmuCI GTSAC 3 cut(s) 383, 651, 968
NspI RCATGY 1 cut(s) 998
OliI CACNNNNGTG 2 cut(s) 34, 258
PaeI GCATGC 1 cut(s) 998
PciSI GCTCTTC 1 cut(s) 679
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PfeI GAWTC 2 cut(s) 325, 454
PflMI CCANNNNNTGG 3 cut(s) 345, 485, 719
PfoI TCCNGGA 1 cut(s) 870
PkrI GCNGC 2 cut(s) 924, 1062
PleI GAGTC 4 cut(s) 226, 658, 848, 956
PpsI GAGTC 4 cut(s) 226, 658, 848, 956
PshAI GACNNNNGTC 2 cut(s) 858, 966
Psp6I CCWGG 2 cut(s) 328, 870
PspEI GGTNACC 1 cut(s) 968
PspFI CCCAGC 2 cut(s) 19, 981
PspGI CCWGG 2 cut(s) 328, 870
PspN4I GGNNCC 7 cut(s) 350, 554, 614, 701, 752, 893, 979
PspPI GGNCC 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 991
PsuI RGATCY 4 cut(s) 106, 201, 265, 622
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 3 cut(s) 350, 362, 900
RsaNI GTAC 3 cut(s) 349, 361, 899
RseI CAYNNNNRTG 2 cut(s) 34, 258
SapI GCTCTTC 1 cut(s) 679
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 2 cut(s) 923, 1061
Sau3AI GATC 7 cut(s) 106, 148, 201, 265, 355, 622, 1096
Sau96I GGNCC 1 cut(s) 160
SchI GAGTC 4 cut(s) 226, 659, 848, 956
ScrFI CCNGG 2 cut(s) 330, 872
SduI GDGCHC 1 cut(s) 1128
SfaNI GCATC 1 cut(s) 934
SfcI CTRYAG 3 cut(s) 181, 795, 882
SinI GGWCC 1 cut(s) 160
SmiMI CAYNNNNRTG 2 cut(s) 34, 258
SmlI CTYRAG 1 cut(s) 744
SmoI CTYRAG 1 cut(s) 744
SphI GCATGC 1 cut(s) 998
Sse9I AATT 1 cut(s) 93
SsiI CCGC 2 cut(s) 32, 923
SspI AATATT 2 cut(s) 542, 1024
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 2 cut(s) 328, 870
StyI CCWWGG 2 cut(s) 608, 973
TaaI ACNGT 3 cut(s) 289, 383, 469
TaiI ACGT 2 cut(s) 390, 840
TaqI TCGA 1 cut(s) 97
TasI AATT 1 cut(s) 93
TatI WGTACW 1 cut(s) 360
TauI GCSGC 1 cut(s) 925
TfiI GAWTC 2 cut(s) 325, 454
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 4 cut(s) 245, 388, 399, 415
TseFI GTSAC 3 cut(s) 383, 651, 968
TseI GCWGC 1 cut(s) 1060
Tsp45I GTSAC 3 cut(s) 383, 651, 968
TspDTI ATGAA 3 cut(s) 31, 131, 483
TspGWI ACGGA 2 cut(s) 38, 145
TspRI CASTG 4 cut(s) 245, 388, 399, 415
Van91I CCANNNNNTGG 3 cut(s) 345, 485, 719
VpaK11BI GGWCC 1 cut(s) 160
XapI RAATTY 1 cut(s) 93
XceI RCATGY 1 cut(s) 998
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.