Rh2AG164600
NAC Family

nac domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0006902
Physical Location & Seq
Forward (+)
15511604 .. 15514089
2486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG164600.1

Sequence Viewer

Length: 684 bp
ATGGAGAACCAGACACCACCCTCTGGCTCAGCCCCCCCTGCCCCGCAGAGACCACCAGAATGGTTTCAGTTCCGTCCATCGGACCAAAGAACAATTCAGTTCTTGTCTGCCAAGATTCACAATCAAGATCTCCCACTGCATGAGATTGTAGACACCAACGTCTTTGGTGACACACCGAAGGAGATTGCAGCCAAGGCTAAAACGAGCAGAAAACTGAGCTTTATTTTTTCACTGAAACGACTAAGAGGCCATACAGCTGGGATCCAAATCACAGGCCAAGATGGTCGGGTAATTGGTCGAAAAAAGAAGTTCAACTATCATGAAAATCGTAACTCTGATGTGAAGTGGTACCTTGATCAGTATATCACTGAAGAGAACGGTACTTGGGTTGTTTACAAACTGTACACAGGAAAAAGACCTGCCCACCACATAATCTCGGCTGCACAATCATCTTTGTCACAAGACCCGACAACTCAGACTGCAAACACTGCTGCGATTGTTCAAGACCATCAATCTCCATCAATGCCCGTGCAGCCTCAGACAATGTTGCAGCAGCTCTTGAATGCCAGTGACTCATTGAGTACCCCCCCCTGCTCAGACAATGCTACACCAAGAGTTACCGGCAGCTGCATCAATGTCCGTTCAGCATCCTACATCACAGTAGGGATTGATTGGTGGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

227

Amino Acids

25.46

Weight (kDa)

9.23

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 22 - 121 4.6e-08 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
Acc36I ACCTGC 1 cut(s) 427
Acc65I GGTACC 1 cut(s) 348
AccB1I GGYRCC 1 cut(s) 348
AccB7I CCANNNNNTGG 1 cut(s) 23
AccI GTMKAC 1 cut(s) 150
AciI CCGC 1 cut(s) 44
AclWI GGATC 2 cut(s) 256, 269
AcuI CTGAAG 1 cut(s) 390
AfaI GTAC 5 cut(s) 350, 382, 404, 583, 680
AfiI CCNNNNNNNGG 2 cut(s) 23, 79
AgsI TTSAA 3 cut(s) 313, 503, 562
AjuI GAANNNNNNNTTGG 2 cut(s) 78, 110
AluBI AGCT 4 cut(s) 219, 257, 556, 627
AluI AGCT 4 cut(s) 219, 257, 556, 627
Alw26I GTCTC 1 cut(s) 43
AlwI GGATC 2 cut(s) 256, 269
AoxI GGCC 2 cut(s) 247, 274
ApeKI GCWGC 8 cut(s) 188, 440, 491, 532, 550, 553, 624, 627
Asp700I GAANNNNTTC 1 cut(s) 63
Asp718I GGTACC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 179
AvaII GGWCC 1 cut(s) 82
BaeI ACNNNNGTAYC 2 cut(s) 372, 405
BamHI GGATCC 1 cut(s) 261
BanI GGYRCC 1 cut(s) 348
BbvI GCAGC 8 cut(s) 200, 427, 478, 544, 562, 565, 614, 636
BccI CCATC 4 cut(s) 85, 275, 516, 526
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 43
BfuAI ACCTGC 1 cut(s) 427
BglII AGATCT 1 cut(s) 127
BisI GCNGC 8 cut(s) 189, 441, 492, 533, 551, 554, 625, 628
BlpI GCTNAGC 1 cut(s) 28
BlsI GCNGC 8 cut(s) 190, 442, 493, 534, 552, 555, 626, 629
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 2 cut(s) 263, 350
BmsI GCATC 2 cut(s) 639, 656
Bpu1102I GCTNAGC 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 266
BsaI GGTCTC 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 79
Bse118I RCCGGY 1 cut(s) 620
Bse1I ACTGG 1 cut(s) 567
Bse8I GATNNNNATC 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 647
BseJI GATNNNNATC 1 cut(s) 266
BseLI CCNNNNNNNGG 2 cut(s) 23, 79
BseMII CTCAG 5 cut(s) 42, 206, 488, 551, 609
BseNI ACTGG 1 cut(s) 567
BseXI GCAGC 8 cut(s) 200, 427, 478, 544, 562, 565, 614, 636
BseYI CCCAGC 1 cut(s) 257
BsgI GTGCAG 2 cut(s) 426, 551
BshFI GGCC 2 cut(s) 249, 276
BshNI GGYRCC 1 cut(s) 348
BsiSI CCGG 1 cut(s) 621
BslI CCNNNNNNNGG 2 cut(s) 23, 79
BsmAI GTCTC 1 cut(s) 43
BsmI GAATGC 1 cut(s) 568
BsnI GGCC 2 cut(s) 249, 276
Bso31I GGTCTC 1 cut(s) 43
Bsp1407I TGTACA 1 cut(s) 402
Bsp143I GATC 3 cut(s) 127, 261, 355
Bsp1720I GCTNAGC 1 cut(s) 28
BspACI CCGC 1 cut(s) 44
BspANI GGCC 2 cut(s) 249, 276
BspCNI CTCAG 5 cut(s) 41, 207, 487, 550, 608
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 2 cut(s) 263, 350
BspMI ACCTGC 1 cut(s) 427
BspPI GGATC 2 cut(s) 256, 269
BspT107I GGYRCC 1 cut(s) 348
BspTNI GGTCTC 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 620
BsrGI TGTACA 1 cut(s) 402
BsrI ACTGG 1 cut(s) 567
BssAI RCCGGY 1 cut(s) 620
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 3 cut(s) 127, 261, 355
BssT1I CCWWGG 1 cut(s) 192
Bst4CI ACNGT 3 cut(s) 380, 402, 661
Bst6I CTCTTC 1 cut(s) 366
BstAPI GCANNNNNTGC 1 cut(s) 488
BstAUI TGTACA 1 cut(s) 402
BstDEI CTNAG 6 cut(s) 28, 215, 242, 474, 537, 595
BstF5I GGATG 1 cut(s) 647
BstKTI GATC 3 cut(s) 130, 264, 358
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 3 cut(s) 127, 261, 355
BstMWI GCNNNNNNNGC 4 cut(s) 38, 194, 488, 532
BstV1I GCAGC 8 cut(s) 200, 427, 478, 544, 562, 565, 614, 636
BstX2I RGATCY 2 cut(s) 127, 261
BstXI CCANNNNNNTGG 2 cut(s) 60, 257
BstYI RGATCY 2 cut(s) 127, 261
BsuRI GGCC 2 cut(s) 249, 276
BtsCI GGATG 1 cut(s) 647
BtsI GCAGTG 2 cut(s) 134, 486
BtsIMutI CAGTG 5 cut(s) 134, 230, 366, 486, 574
BveI ACCTGC 1 cut(s) 427
CciI TCATGA 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 620
Cfr13I GGNCC 1 cut(s) 82
Csp6I GTAC 5 cut(s) 349, 381, 403, 582, 679
CviAII CATG 2 cut(s) 140, 320
CviQI GTAC 5 cut(s) 349, 381, 403, 582, 679
DdeI CTNAG 6 cut(s) 28, 215, 242, 474, 537, 595
DpnI GATC 3 cut(s) 129, 263, 357
DpnII GATC 3 cut(s) 127, 261, 355
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 390
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 2 cut(s) 143, 323
FaiI YATR 5 cut(s) 141, 252, 321, 363, 431
FatI CATG 2 cut(s) 139, 319
FauI CCCGC 1 cut(s) 51
FbaI TGATCA 1 cut(s) 355
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 8 cut(s) 189, 441, 492, 533, 551, 554, 625, 628
FokI GGATG 1 cut(s) 634
Fsp4HI GCNGC 8 cut(s) 189, 441, 492, 533, 551, 554, 625, 628
GluI GCNGC 8 cut(s) 189, 441, 492, 533, 551, 554, 625, 628
GsaI CCCAGC 1 cut(s) 261
HaeIII GGCC 2 cut(s) 249, 276
HapII CCGG 1 cut(s) 621
Hin1II CATG 2 cut(s) 143, 323
HinfI GANTC 2 cut(s) 115, 572
HpaII CCGG 1 cut(s) 621
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 3 cut(s) 151, 394, 405
Hpy188I TCNGA 5 cut(s) 82, 337, 477, 540, 598
Hpy188III TCNNGA 4 cut(s) 125, 320, 503, 559
Hpy8I GTNNAC 3 cut(s) 151, 394, 405
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 3 cut(s) 380, 402, 661
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 7 cut(s) 139, 188, 443, 482, 532, 550, 630
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 194, 488, 532
HpyF3I CTNAG 6 cut(s) 28, 215, 242, 474, 537, 595
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 2 cut(s) 143, 323
KpnI GGTACC 1 cut(s) 352
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 3 cut(s) 127, 261, 355
Lsp1109I GCAGC 8 cut(s) 200, 427, 478, 544, 562, 565, 614, 636
LweI GCATC 2 cut(s) 639, 656
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 5 cut(s) 167, 329, 456, 569, 616
MalI GATC 3 cut(s) 129, 263, 357
MboI GATC 3 cut(s) 127, 261, 355
MboII GAAGA 1 cut(s) 383
MflI RGATCY 2 cut(s) 127, 261
MluCI AATT 2 cut(s) 93, 291
MlyI GAGTC 1 cut(s) 566
MnlI CCTC 3 cut(s) 31, 239, 546
MroXI GAANNNNTTC 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 58
MspA1I CMGCKG 2 cut(s) 257, 627
MspI CCGG 1 cut(s) 621
Mva1269I GAATGC 1 cut(s) 568
MwoI GCNNNNNNNGC 4 cut(s) 38, 194, 488, 532
NdeII GATC 3 cut(s) 127, 261, 355
NlaIII CATG 2 cut(s) 143, 323
NlaIV GGNNCC 2 cut(s) 263, 350
NmeAIII GCCGAG 1 cut(s) 416
NmuCI GTSAC 3 cut(s) 167, 456, 569
PagI TCATGA 1 cut(s) 319
PctI GAATGC 1 cut(s) 568
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 1 cut(s) 115
PflMI CCANNNNNTGG 1 cut(s) 23
PkrI GCNGC 8 cut(s) 190, 442, 493, 534, 552, 555, 626, 629
PleI GAGTC 1 cut(s) 566
PpsI GAGTC 1 cut(s) 566
PspFI CCCAGC 1 cut(s) 257
PspN4I GGNNCC 2 cut(s) 263, 350
PspPI GGNCC 1 cut(s) 82
PsuI RGATCY 2 cut(s) 127, 261
PvuII CAGCTG 2 cut(s) 257, 627
RsaI GTAC 5 cut(s) 350, 382, 404, 583, 680
RsaNI GTAC 5 cut(s) 349, 381, 403, 582, 679
RseI CAYNNNNRTG 1 cut(s) 58
SatI GCNGC 8 cut(s) 189, 441, 492, 533, 551, 554, 625, 628
Sau3AI GATC 3 cut(s) 127, 261, 355
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 1 cut(s) 566
SetI ASST 7 cut(s) 162, 221, 259, 354, 421, 558, 629
SfaNI GCATC 2 cut(s) 639, 656
SinI GGWCC 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 58
Sse9I AATT 2 cut(s) 93, 291
SsiI CCGC 1 cut(s) 44
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 3 cut(s) 380, 402, 661
TaiI ACGT 1 cut(s) 162
TaqI TCGA 1 cut(s) 298
TasI AATT 2 cut(s) 93, 291
TatI WGTACW 1 cut(s) 402
TfiI GAWTC 1 cut(s) 115
TscAI CASTG 5 cut(s) 141, 237, 373, 493, 574
TseFI GTSAC 3 cut(s) 167, 456, 569
TseI GCWGC 8 cut(s) 188, 440, 491, 532, 550, 553, 624, 627
Tsp45I GTSAC 3 cut(s) 167, 456, 569
TspDTI ATGAA 1 cut(s) 336
TspGWI ACGGA 2 cut(s) 62, 629
TspRI CASTG 5 cut(s) 141, 237, 373, 493, 574
Van91I CCANNNNNTGG 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 82
XmiI GTMKAC 1 cut(s) 150
XmnI GAANNNNTTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.