Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006902

Physical Location & Seq

Genomic Coordinates Forward (+)

1180205 .. 1185301

Gene Structure 5097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGCAGGTCCGAACTACGCGATGCCATCGCTGGGCTATCAATTCAGACTGTCAGACCAATCGGTTTTCTATTTTCTGAACAGGAGAATTGCAGGTCTGCCATTGGGGGCGCACAGCATTGACGAGGATCCAAATGACCCAACCTTCATTGCAGACCCACACATTATCGCAAGTGTGCTACGGTACAGCCGGGAGCGGAACGAGCTATACTTTTTTACCACAAAGTACAGAATCAAAGGATCCCAATGGGTAGCAACAGGCAAGACAGCGGAGGACATAAGAGGGGCTAACGGTCAGATATTGGGTACCAAAAGGCTGTACCGGCATAAGAACAACTACAAACGGTACAAATGGTATCTGGATGTATACCAAATGCCAGAGCATGACATGACAATGGTTAAGTTTTATGAGAGCAGCCGAGGCGAACACTACAGTCCACCACCTATGACGCAGGAACAATTTCGGCAGTCTGTGGCCTACATCGTTCGGGATACTCTAAGTCGTTTGGGCTACATTCCTAGAAGTTCAATTTTTCCCTTAAATGCGCCACCTCCAACTTCTATGCCATCTGCAGCCAGTTCTGGAACTGGCTCAATGATTCCTACTCCTGGAATCTCTCAACAAGCCCAATCTGGGATACAGTCACTTGGTGCAAACAGTAGTTCGGTATCTAATCCGTTGTCACAACAAGCGTCAAGTGCTCGGCAATCTGCACAATCCCAATATGCAAAATTCTGGGAGGGAAATCTATCTTTCCTGGGGCGGAGAAGTCAACCTGTGTCTATTACTAGATTGGAAGGATACAGAAGGGCATCAGCATCTGAGACGCTTGCAGCAAACTGGCCACCGACATTGCAAATAGTCAGGCTCATACCTCAGGAACCCCTGAATAACAGGCGATTTGTGAGACGGGTAGACAAACTAGTATTTTGGATAATGGATCAGCACGAATTTCTTCGGCAGTTGCAAGAAAAAAAGCTTTGTGCTGTTATCAAATTGCCGTCTCAGACACTAATGCTATCTGTTGCGGAAAAACCTTTCTGCTTGGTCGGAATACTGTACCCATGGGATTTGGTTAAGTTAGAGCCAGGTGAAGTTCTGATGCCTCAACATGTGCAACCACAGCTAATAACAACAGCAGCCTCAGCTTCAACAAATGCAGCAACAGCAGCCTCAGCTACCATAGATGCAGCAACAGCAACCGCAGCTACAGCAGCAACAATTGCAACCACAGCTCCAGCAACACAGCTTCAGCAACAACAGCAACCACAACAAGGGTCTAATATGCCCGGAGGATGCTTTATGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med25_VWA

Protein Analysis

437

Amino Acids

48.43

Weight (kDa)

9.61

Isoelectric Point (pI)

57.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006902)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09330 FvH4_5g01900 FvH4_5g01900 FvH4_5g05460 FvH4_5g05460 FvH4_5g05460 FvH4_5g05460 FvH4_5g05460 FvH4_5g05460 FvH4_5g05460 FvH4_5g05460 FvH4_6g01630 FvH4_6g01630 FvH4_6g01630 FvH4_6g01630 FvH4_6g01630 FvH4_6g01630 FvH4_6g01630 FvH4_6g01630
rosa_laevigata	RLG00000017344
rosa_roxburghii	Rroxscaffold_2G00145720
rosa_samantha	Rh2AG164600 Rh2BG171700 Rh2CG171200 Rh2DG170100
rosa_wichuraiana	Rw2G008020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	83
Acc65I	GGTACC	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	305
AccBSI	CCGCTC	1 cut(s)	196
AccI	GTMKAC	2 cut(s)	366, 915
AccII	CGCG	1 cut(s)	20
AciI	CCGC	5 cut(s)	196, 269, 763, 1028, 1203
AclWI	GGATC	5 cut(s)	122, 135, 234, 247, 948
AcoI	YGGCCR	1 cut(s)	842
AcsI	RAATTY	2 cut(s)	731, 950
AcuI	CTGAAG	1 cut(s)	1235
AdeI	CACNNNGTG	1 cut(s)	650
AfaI	GTAC	6 cut(s)	185, 227, 307, 320, 347, 1061
AfiI	CCNNNNNNNGG	4 cut(s)	32, 608, 633, 1274
AflIII	ACRYGT	1 cut(s)	1111
AgsI	TTSAA	2 cut(s)	528, 1152
AhlI	ACTAGT	1 cut(s)	922
AjnI	CCWGG	3 cut(s)	607, 756, 1087
AluBI	AGCT	8 cut(s)	205, 979, 1126, 1148, 1178, 1208, 1235, 1249
AluI	AGCT	8 cut(s)	205, 979, 1126, 1148, 1178, 1208, 1235, 1249
Alw21I	GWGCWC	1 cut(s)	703
Alw26I	GTCTC	3 cut(s)	818, 901, 1008
AlwI	GGATC	5 cut(s)	122, 135, 234, 247, 948
AlwNI	CAGNNNCTG	1 cut(s)	821
AoxI	GGCC	2 cut(s)	474, 842
ApeKI	GCWGC	9 cut(s)	414, 572, 833, 1139, 1160, 1169, 1190, 1205, 1214
ApoI	RAATTY	2 cut(s)	731, 950
Asp700I	GAANNNNTTC	2 cut(s)	459, 954
Asp718I	GGTACC	1 cut(s)	305
AspLEI	GCGC	2 cut(s)	112, 547
AspS9I	GGNCC	1 cut(s)	8
AsuC2I	CCSGG	2 cut(s)	191, 1290
AsuHPI	GGTGA	1 cut(s)	1103
AvaII	GGWCC	1 cut(s)	8
AxyI	CCTNAGG	1 cut(s)	876
BalI	TGGCCA	1 cut(s)	844
BamHI	GGATCC	2 cut(s)	127, 239
BanI	GGYRCC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	703
BbvCI	CCTCAGC	2 cut(s)	1144, 1174
BbvI	GCAGC	9 cut(s)	426, 584, 845, 1151, 1172, 1181, 1202, 1217, 1226
BccI	CCATC	2 cut(s)	34, 574
BceAI	ACGGC	1 cut(s)	985
BciT130I	CCWGG	3 cut(s)	609, 758, 1089
BciVI	GTATCC	3 cut(s)	484, 630, 794
BcnI	CCSGG	2 cut(s)	191, 1290
BcoDI	GTCTC	3 cut(s)	818, 901, 1008
BcuI	ACTAGT	1 cut(s)	922
BfaI	CTAG	3 cut(s)	519, 789, 923
BfmI	CTRYAG	3 cut(s)	430, 570, 1209
BfuAI	ACCTGC	1 cut(s)	83
BfuI	GTATCC	3 cut(s)	484, 630, 794
BisI	GCNGC	9 cut(s)	415, 573, 834, 1140, 1161, 1170, 1191, 1206, 1215
BlsI	GCNGC	9 cut(s)	416, 574, 835, 1141, 1162, 1171, 1192, 1207, 1216
Bme1390I	CCNGG	5 cut(s)	191, 609, 758, 1089, 1290
Bme18I	GGWCC	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	8
BmiI	GGNNCC	4 cut(s)	129, 241, 307, 882
BmrFI	CCNGG	5 cut(s)	191, 609, 758, 1089, 1290
BmsI	GCATC	6 cut(s)	12, 821, 827, 1092, 1177, 1286
BpmI	CTGGAG	1 cut(s)	1221
Bpu10I	CCTNAGC	2 cut(s)	1144, 1174
BpuMI	CCSGG	2 cut(s)	191, 1290
BsaJI	CCNNGG	3 cut(s)	418, 757, 1064
BsaXI	ACNNNNNCTCC	2 cut(s)	1219, 1249
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 608, 633, 1274
Bse118I	RCCGGY	1 cut(s)	321
Bse1I	ACTGG	3 cut(s)	576, 592, 845
Bse21I	CCTNAGG	1 cut(s)	876
Bse3DI	GCAATG	2 cut(s)	147, 851
BseBI	CCWGG	3 cut(s)	609, 758, 1089
BseDI	CCNNGG	3 cut(s)	418, 757, 1064
BseGI	GGATG	2 cut(s)	367, 1301
BseLI	CCNNNNNNNGG	4 cut(s)	32, 608, 633, 1274
BseMI	GCAATG	2 cut(s)	147, 851
BseMII	CTCAG	5 cut(s)	813, 890, 1019, 1158, 1188
BseNI	ACTGG	3 cut(s)	576, 592, 845
BseXI	GCAGC	9 cut(s)	426, 584, 845, 1151, 1172, 1181, 1202, 1217, 1226
BseYI	CCCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	696
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	476, 844
BshNI	GGYRCC	1 cut(s)	305
BsiHKAI	GWGCWC	1 cut(s)	703
BsiSI	CCGG	3 cut(s)	190, 322, 1290
BslI	CCNNNNNNNGG	4 cut(s)	32, 608, 633, 1274
BsmAI	GTCTC	3 cut(s)	818, 901, 1008
BsmBI	CGTCTC	3 cut(s)	818, 901, 1008
BsnI	GGCC	2 cut(s)	476, 844
Bsp1286I	GDGCHC	1 cut(s)	703
Bsp143I	GATC	3 cut(s)	127, 239, 940
Bsp19I	CCATGG	1 cut(s)	1064
BspACI	CCGC	5 cut(s)	196, 269, 763, 1028, 1203
BspANI	GGCC	2 cut(s)	476, 844
BspCNI	CTCAG	5 cut(s)	814, 889, 1018, 1157, 1187
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	4 cut(s)	129, 241, 307, 882
BspMAI	CTGCAG	1 cut(s)	574
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	5 cut(s)	122, 135, 234, 247, 948
BspT107I	GGYRCC	1 cut(s)	305
BsrBI	CCGCTC	1 cut(s)	196
BsrDI	GCAATG	2 cut(s)	147, 851
BsrFI	RCCGGY	1 cut(s)	321
BsrI	ACTGG	3 cut(s)	576, 592, 845
BssAI	RCCGGY	1 cut(s)	321
BssECI	CCNNGG	3 cut(s)	418, 757, 1064
BssMI	GATC	3 cut(s)	127, 239, 940
BssNAI	GTATAC	1 cut(s)	367
BssT1I	CCWWGG	1 cut(s)	1064
Bst1107I	GTATAC	1 cut(s)	367
Bst2UI	CCWGG	3 cut(s)	609, 758, 1089
Bst4CI	ACNGT	8 cut(s)	51, 183, 293, 345, 434, 642, 659, 1059
BstAPI	GCANNNNNTGC	1 cut(s)	1223
BstC8I	GCNNGC	1 cut(s)	831
BstDEI	CTNAG	6 cut(s)	497, 822, 876, 1005, 1144, 1174
BstDSI	CCRYGG	1 cut(s)	1064
BstF5I	GGATG	2 cut(s)	367, 1301
BstFNI	CGCG	1 cut(s)	20
BstHHI	GCGC	2 cut(s)	112, 547
BstKTI	GATC	3 cut(s)	130, 242, 943
BstMAI	GTCTC	3 cut(s)	818, 901, 1008
BstMBI	GATC	3 cut(s)	127, 239, 940
BstNI	CCWGG	3 cut(s)	609, 758, 1089
BstNSI	RCATGY	1 cut(s)	1115
BstSCI	CCNGG	5 cut(s)	189, 607, 756, 1087, 1288
BstSFI	CTRYAG	3 cut(s)	430, 570, 1209
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	9 cut(s)	426, 584, 845, 1151, 1172, 1181, 1202, 1217, 1226
BstX2I	RGATCY	2 cut(s)	127, 239
BstYI	RGATCY	2 cut(s)	127, 239
BstZ17I	GTATAC	1 cut(s)	367
Bsu36I	CCTNAGG	1 cut(s)	876
BsuI	GTATCC	3 cut(s)	484, 630, 794
BsuRI	GGCC	2 cut(s)	476, 844
BtgI	CCRYGG	1 cut(s)	1064
BtgZI	GCGATG	2 cut(s)	12, 35
BtsCI	GGATG	2 cut(s)	367, 1301
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	831
CaiI	CAGNNNCTG	1 cut(s)	821
CfoI	GCGC	2 cut(s)	112, 547
Cfr10I	RCCGGY	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	8
CseI	GACGC	3 cut(s)	457, 681, 835
Csp6I	GTAC	6 cut(s)	184, 226, 306, 319, 346, 1060
CspCI	CAANNNNNGTGG	2 cut(s)	834, 869
CviAII	CATG	4 cut(s)	383, 388, 1065, 1112
CviQI	GTAC	6 cut(s)	184, 226, 306, 319, 346, 1060
DdeI	CTNAG	6 cut(s)	497, 822, 876, 1005, 1144, 1174
DpnI	GATC	3 cut(s)	129, 241, 942
DpnII	GATC	3 cut(s)	127, 239, 940
DraIII	CACNNNGTG	1 cut(s)	650
EaeI	YGGCCR	1 cut(s)	842
EciI	GGCGGA	1 cut(s)	778
Eco130I	CCWWGG	1 cut(s)	1064
Eco47I	GGWCC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	1235
Eco81I	CCTNAGG	1 cut(s)	876
EcoRII	CCWGG	3 cut(s)	607, 756, 1087
EcoT14I	CCWWGG	1 cut(s)	1064
ErhI	CCWWGG	1 cut(s)	1064
Esp3I	CGTCTC	3 cut(s)	818, 901, 1008
FaeI	CATG	4 cut(s)	386, 391, 1068, 1115
FatI	CATG	4 cut(s)	382, 387, 1064, 1111
FblI	GTMKAC	2 cut(s)	366, 915
Fnu4HI	GCNGC	9 cut(s)	415, 573, 834, 1140, 1161, 1170, 1191, 1206, 1215
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	9 cut(s)	415, 573, 834, 1140, 1161, 1170, 1191, 1206, 1215
FspBI	CTAG	3 cut(s)	519, 789, 923
GlaI	GCGC	2 cut(s)	111, 546
GluI	GCNGC	9 cut(s)	415, 573, 834, 1140, 1161, 1170, 1191, 1206, 1215
GsaI	CCCAGC	1 cut(s)	35
GsuI	CTGGAG	1 cut(s)	1221
HaeIII	GGCC	2 cut(s)	476, 844
HapII	CCGG	3 cut(s)	190, 322, 1290
HgaI	GACGC	3 cut(s)	457, 681, 835
HhaI	GCGC	2 cut(s)	112, 547
Hin1II	CATG	4 cut(s)	386, 391, 1068, 1115
Hin6I	GCGC	2 cut(s)	110, 545
HinP1I	GCGC	2 cut(s)	110, 545
HincII	GTYRAC	1 cut(s)	773
HindII	GTYRAC	1 cut(s)	773
HindIII	AAGCTT	1 cut(s)	977
HinfI	GANTC	3 cut(s)	231, 598, 612
HpaII	CCGG	3 cut(s)	190, 322, 1290
HphI	GGTGA	1 cut(s)	1103
Hpy166II	GTNNAC	4 cut(s)	367, 437, 773, 916
Hpy188I	TCNGA	9 cut(s)	12, 47, 55, 78, 297, 823, 1008, 1052, 1101
Hpy188III	TCNNGA	4 cut(s)	359, 488, 582, 878
Hpy8I	GTNNAC	4 cut(s)	367, 437, 773, 916
HpyAV	CCTTC	3 cut(s)	154, 791, 801
HpyCH4III	ACNGT	8 cut(s)	51, 183, 293, 345, 434, 642, 659, 1059
HpyF3I	CTNAG	6 cut(s)	497, 822, 876, 1005, 1144, 1174
Hsp92II	CATG	4 cut(s)	386, 391, 1068, 1115
HspAI	GCGC	2 cut(s)	110, 545
KpnI	GGTACC	1 cut(s)	309
Kzo9I	GATC	3 cut(s)	127, 239, 940
LmnI	GCTCC	2 cut(s)	193, 1240
Lsp1109I	GCAGC	9 cut(s)	426, 584, 845, 1151, 1172, 1181, 1202, 1217, 1226
LweI	GCATC	6 cut(s)	12, 821, 827, 1092, 1177, 1286
MaeI	CTAG	3 cut(s)	519, 789, 923
MaeIII	GTNAC	2 cut(s)	642, 681
MalI	GATC	3 cut(s)	129, 241, 942
MbiI	CCGCTC	1 cut(s)	196
MboI	GATC	3 cut(s)	127, 239, 940
MboII	GAAGA	1 cut(s)	947
MfeI	CAATTG	1 cut(s)	1221
MflI	RGATCY	2 cut(s)	127, 239
MhlI	GDGCHC	1 cut(s)	703
MlsI	TGGCCA	1 cut(s)	844
MluCI	AATT	8 cut(s)	41, 87, 458, 528, 731, 950, 995, 1221
MluNI	TGGCCA	1 cut(s)	844
MmeI	TCCRAC	2 cut(s)	578, 1030
Mox20I	TGGCCA	1 cut(s)	844
MroXI	GAANNNNTTC	2 cut(s)	459, 954
MscI	TGGCCA	1 cut(s)	844
MseI	TTAA	3 cut(s)	399, 539, 1077
MslI	CAYNNNNRTG	1 cut(s)	392
Msp20I	TGGCCA	1 cut(s)	844
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	3 cut(s)	190, 322, 1290
MspR9I	CCNGG	5 cut(s)	191, 609, 758, 1089, 1290
MunI	CAATTG	1 cut(s)	1221
MvaI	CCWGG	3 cut(s)	609, 758, 1089
MvnI	CGCG	1 cut(s)	20
NciI	CCSGG	2 cut(s)	191, 1290
NcoI	CCATGG	1 cut(s)	1064
NdeII	GATC	3 cut(s)	127, 239, 940
NlaIII	CATG	4 cut(s)	386, 391, 1068, 1115
NlaIV	GGNNCC	4 cut(s)	129, 241, 307, 882
NmeAIII	GCCGAG	2 cut(s)	443, 682
NmuCI	GTSAC	2 cut(s)	642, 681
NspI	RCATGY	1 cut(s)	1115
PciI	ACATGT	1 cut(s)	1111
PdmI	GAANNNNTTC	2 cut(s)	459, 954
PfeI	GAWTC	3 cut(s)	231, 598, 612
PfoI	TCCNGGA	1 cut(s)	607
PkrI	GCNGC	9 cut(s)	416, 574, 835, 1141, 1162, 1171, 1192, 1207, 1216
PscI	ACATGT	1 cut(s)	1111
Psp6I	CCWGG	3 cut(s)	607, 756, 1087
PspFI	CCCAGC	1 cut(s)	31
PspGI	CCWGG	3 cut(s)	607, 756, 1087
PspN4I	GGNNCC	4 cut(s)	129, 241, 307, 882
PspPI	GGNCC	1 cut(s)	8
PsrI	GAACNNNNNNTAC	2 cut(s)	191, 223
PstI	CTGCAG	1 cut(s)	574
PstNI	CAGNNNCTG	1 cut(s)	821
PsuI	RGATCY	2 cut(s)	127, 239
RsaI	GTAC	6 cut(s)	185, 227, 307, 320, 347, 1061
RsaNI	GTAC	6 cut(s)	184, 226, 306, 319, 346, 1060
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	3 cut(s)	399, 539, 1077
SatI	GCNGC	9 cut(s)	415, 573, 834, 1140, 1161, 1170, 1191, 1206, 1215
Sau3AI	GATC	3 cut(s)	127, 239, 940
Sau96I	GGNCC	1 cut(s)	8
ScrFI	CCNGG	5 cut(s)	191, 609, 758, 1089, 1290
SduI	GDGCHC	1 cut(s)	703
SfaNI	GCATC	6 cut(s)	12, 821, 827, 1092, 1177, 1286
SfcI	CTRYAG	3 cut(s)	430, 570, 1209
SinI	GGWCC	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	392
SpeI	ACTAGT	1 cut(s)	922
Sse9I	AATT	8 cut(s)	41, 87, 458, 528, 731, 950, 995, 1221
SsiI	CCGC	5 cut(s)	196, 269, 763, 1028, 1203
SspMI	CTAG	3 cut(s)	519, 789, 923
StyD4I	CCNGG	5 cut(s)	189, 607, 756, 1087, 1288
StyI	CCWWGG	1 cut(s)	1064
TaaI	ACNGT	8 cut(s)	51, 183, 293, 345, 434, 642, 659, 1059
TasI	AATT	8 cut(s)	41, 87, 458, 528, 731, 950, 995, 1221
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	3 cut(s)	231, 598, 612
Tru1I	TTAA	3 cut(s)	399, 539, 1077
Tru9I	TTAA	3 cut(s)	399, 539, 1077
TseFI	GTSAC	2 cut(s)	642, 681
TseI	GCWGC	9 cut(s)	414, 572, 833, 1139, 1160, 1169, 1190, 1205, 1214
Tsp45I	GTSAC	2 cut(s)	642, 681
TspDTI	ATGAA	1 cut(s)	136
TspGWI	ACGGA	1 cut(s)	666
VpaK11BI	GGWCC	1 cut(s)	8
XapI	RAATTY	2 cut(s)	731, 950
XceI	RCATGY	1 cut(s)	1115
XmiI	GTMKAC	2 cut(s)	366, 915
XmnI	GAANNNNTTC	2 cut(s)	459, 954
XspI	CTAG	3 cut(s)	519, 789, 923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.