Rh2DG170100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006902
Physical Location & Seq
Forward (+)
14835595 .. 14836161
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG170100.1

Sequence Viewer

Length: 567 bp
ATGTCCGCATGGAACCCCCAATTTTTTCTTGGCCAGCAGCTGGAGCACACAAACATCCCAACAGGTCCAATACTTCCTCACACCTCCCTTCAAACTGGCCCCCCAGAGCTGCAGCACACCACCATCATGGACCAAGACCCTTCTACAGTTCCAAACCCTCAATTTCTTCTTCGCCAGCAGCTGGAGCACACAAACATTCCAACAGGTCCAATGCTTCCTCACACCTCCCTTCAAACTGAAACTAGCCCCTCAGAGCTGCAGCAGACCGCCATCCTGGACAAAGACCCTTCTACAGTTCCAAACCCTCAATTTCTTCTTCTTCGCCAGCAGTTGGAGCACACAAACAGTCCAACAAGTCCAATGCTTCCTCACAGCTCCCTTCAAACTGGCCCCTTAGAGCTGCAGCAGACCGCCATCCTGGACCAAGAACCTTCTACAGTTCCAAACCCTCCTCAACCCACCAACCCTGCATATCCAGGACTTTGGAATGAACAAGACACCAATTCGTTTGATTTGTTTGATATTGATCAGTTTATGCATGCACCACCAGCTAGCAACCAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.93

Weight (kDa)

4.44

Isoelectric Point (pI)

70.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 40, 181, 331
AciI CCGC 3 cut(s) 6, 267, 411
AcoI YGGCCR 1 cut(s) 31
AfiI CCNNNNNNNGG 3 cut(s) 40, 181, 331
AgsI TTSAA 3 cut(s) 92, 233, 383
AjnI CCWGG 3 cut(s) 273, 417, 475
AluBI AGCT 7 cut(s) 40, 109, 181, 256, 375, 400, 551
AluI AGCT 7 cut(s) 40, 109, 181, 256, 375, 400, 551
Alw21I GWGCWC 3 cut(s) 48, 189, 339
AlwNI CAGNNNCTG 2 cut(s) 40, 181
AoxI GGCC 3 cut(s) 31, 97, 388
ApeKI GCWGC 8 cut(s) 37, 109, 112, 178, 256, 259, 400, 403
AspS9I GGNCC 6 cut(s) 65, 98, 130, 206, 389, 421
AsuNHI GCTAGC 1 cut(s) 551
AvaII GGWCC 4 cut(s) 65, 130, 206, 421
BalI TGGCCA 1 cut(s) 33
Bbv12I GWGCWC 3 cut(s) 48, 189, 339
BbvI GCAGC 8 cut(s) 49, 96, 124, 190, 243, 271, 387, 415
BccI CCATC 3 cut(s) 131, 278, 422
BciT130I CCWGG 3 cut(s) 275, 419, 477
BclI TGATCA 1 cut(s) 526
BfaI CTAG 2 cut(s) 243, 552
BfmI CTRYAG 6 cut(s) 110, 144, 257, 291, 401, 435
BisI GCNGC 8 cut(s) 38, 110, 113, 179, 257, 260, 401, 404
BlsI GCNGC 8 cut(s) 39, 111, 114, 180, 258, 261, 402, 405
Bme1390I CCNGG 3 cut(s) 275, 419, 477
Bme18I GGWCC 4 cut(s) 65, 130, 206, 421
BmgT120I GGNCC 6 cut(s) 65, 98, 130, 206, 389, 421
BmiI GGNNCC 3 cut(s) 14, 100, 391
BmrFI CCNGG 3 cut(s) 275, 419, 477
BmtI GCTAGC 1 cut(s) 555
BpmI CTGGAG 2 cut(s) 62, 203
BsaBI GATNNNNATC 1 cut(s) 525
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 181, 331
Bse1I ACTGG 2 cut(s) 100, 391
Bse8I GATNNNNATC 1 cut(s) 525
BseBI CCWGG 3 cut(s) 275, 419, 477
BseGI GGATG 3 cut(s) 54, 270, 414
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 3 cut(s) 40, 181, 331
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 2 cut(s) 100, 391
BseRI GAGGAG 1 cut(s) 441
BseXI GCAGC 8 cut(s) 49, 96, 124, 190, 243, 271, 387, 415
BshFI GGCC 3 cut(s) 33, 99, 390
BsiHKAI GWGCWC 3 cut(s) 48, 189, 339
BslI CCNNNNNNNGG 3 cut(s) 40, 181, 331
BsnI GGCC 3 cut(s) 33, 99, 390
Bsp1286I GDGCHC 3 cut(s) 48, 189, 339
Bsp143I GATC 1 cut(s) 526
BspACI CCGC 3 cut(s) 6, 267, 411
BspANI GGCC 3 cut(s) 33, 99, 390
BspCNI CTCAG 1 cut(s) 263
BspLI GGNNCC 3 cut(s) 14, 100, 391
BspMAI CTGCAG 3 cut(s) 114, 261, 405
BspOI GCTAGC 1 cut(s) 555
BsrI ACTGG 2 cut(s) 100, 391
BssMI GATC 1 cut(s) 526
Bst2UI CCWGG 3 cut(s) 275, 419, 477
Bst4CI ACNGT 4 cut(s) 148, 295, 347, 439
BstC8I GCNNGC 5 cut(s) 35, 176, 326, 540, 553
BstDEI CTNAG 2 cut(s) 250, 394
BstF5I GGATG 3 cut(s) 54, 270, 414
BstKTI GATC 1 cut(s) 529
BstMBI GATC 1 cut(s) 526
BstMWI GCNNNNNNNGC 4 cut(s) 43, 184, 334, 548
BstNI CCWGG 3 cut(s) 275, 419, 477
BstNSI RCATGY 1 cut(s) 542
BstSCI CCNGG 3 cut(s) 273, 417, 475
BstSFI CTRYAG 6 cut(s) 110, 144, 257, 291, 401, 435
BstV1I GCAGC 8 cut(s) 49, 96, 124, 190, 243, 271, 387, 415
BstXI CCANNNNNNTGG 2 cut(s) 127, 483
BsuRI GGCC 3 cut(s) 33, 99, 390
BtsCI GGATG 3 cut(s) 54, 270, 414
Cac8I GCNNGC 5 cut(s) 35, 176, 326, 540, 553
CaiI CAGNNNCTG 2 cut(s) 40, 181
Cfr13I GGNCC 6 cut(s) 65, 98, 130, 206, 389, 421
CviAII CATG 3 cut(s) 9, 127, 539
DdeI CTNAG 2 cut(s) 250, 394
DpnI GATC 1 cut(s) 528
DpnII GATC 1 cut(s) 526
EaeI YGGCCR 1 cut(s) 31
Eco47I GGWCC 4 cut(s) 65, 130, 206, 421
EcoRII CCWGG 3 cut(s) 273, 417, 475
EcoT22I ATGCAT 1 cut(s) 540
FaeI CATG 3 cut(s) 12, 130, 542
FaiI YATR 5 cut(s) 10, 128, 472, 536, 540
FatI CATG 3 cut(s) 8, 126, 538
FbaI TGATCA 1 cut(s) 526
Fnu4HI GCNGC 8 cut(s) 38, 110, 113, 179, 257, 260, 401, 404
FokI GGATG 3 cut(s) 41, 257, 401
Fsp4HI GCNGC 8 cut(s) 38, 110, 113, 179, 257, 260, 401, 404
FspBI CTAG 2 cut(s) 243, 552
GluI GCNGC 8 cut(s) 38, 110, 113, 179, 257, 260, 401, 404
GsuI CTGGAG 2 cut(s) 62, 203
HaeIII GGCC 3 cut(s) 33, 99, 390
Hin1II CATG 3 cut(s) 12, 130, 542
Hpy188I TCNGA 1 cut(s) 253
HpyAV CCTTC 6 cut(s) 98, 150, 239, 297, 389, 441
HpyCH4III ACNGT 4 cut(s) 148, 295, 347, 439
HpyCH4V TGCA 6 cut(s) 112, 259, 403, 470, 538, 542
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 184, 334, 548
HpyF3I CTNAG 2 cut(s) 250, 394
Hsp92II CATG 3 cut(s) 12, 130, 542
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 1 cut(s) 526
LmnI GCTCC 4 cut(s) 43, 184, 334, 380
Lsp1109I GCAGC 8 cut(s) 49, 96, 124, 190, 243, 271, 387, 415
MaeI CTAG 2 cut(s) 243, 552
MalI GATC 1 cut(s) 528
MboI GATC 1 cut(s) 526
MboII GAAGA 5 cut(s) 158, 161, 305, 308, 311
MhlI GDGCHC 3 cut(s) 48, 189, 339
MlsI TGGCCA 1 cut(s) 33
MluCI AATT 4 cut(s) 20, 161, 308, 502
MluNI TGGCCA 1 cut(s) 33
MmeI TCCRAC 3 cut(s) 224, 312, 374
Mox20I TGGCCA 1 cut(s) 33
Mph1103I ATGCAT 1 cut(s) 540
MscI TGGCCA 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 125
Msp20I TGGCCA 1 cut(s) 33
MspA1I CMGCKG 2 cut(s) 40, 181
MspR9I CCNGG 3 cut(s) 275, 419, 477
MvaI CCWGG 3 cut(s) 275, 419, 477
MwoI GCNNNNNNNGC 4 cut(s) 43, 184, 334, 548
NdeII GATC 1 cut(s) 526
NheI GCTAGC 1 cut(s) 551
NlaIII CATG 3 cut(s) 12, 130, 542
NlaIV GGNNCC 3 cut(s) 14, 100, 391
NsiI ATGCAT 1 cut(s) 540
NspI RCATGY 1 cut(s) 542
PaeI GCATGC 1 cut(s) 542
PflMI CCANNNNNTGG 3 cut(s) 40, 181, 331
PfoI TCCNGGA 3 cut(s) 273, 417, 475
PkrI GCNGC 8 cut(s) 39, 111, 114, 180, 258, 261, 402, 405
Psp6I CCWGG 3 cut(s) 273, 417, 475
PspGI CCWGG 3 cut(s) 273, 417, 475
PspN4I GGNNCC 3 cut(s) 14, 100, 391
PspPI GGNCC 6 cut(s) 65, 98, 130, 206, 389, 421
PstI CTGCAG 3 cut(s) 114, 261, 405
PstNI CAGNNNCTG 2 cut(s) 40, 181
PvuII CAGCTG 2 cut(s) 40, 181
RseI CAYNNNNRTG 1 cut(s) 125
SatI GCNGC 8 cut(s) 38, 110, 113, 179, 257, 260, 401, 404
Sau3AI GATC 1 cut(s) 526
Sau96I GGNCC 6 cut(s) 65, 98, 130, 206, 389, 421
ScrFI CCNGG 3 cut(s) 275, 419, 477
SduI GDGCHC 3 cut(s) 48, 189, 339
SfcI CTRYAG 6 cut(s) 110, 144, 257, 291, 401, 435
SinI GGWCC 4 cut(s) 65, 130, 206, 421
SmiMI CAYNNNNRTG 1 cut(s) 125
SphI GCATGC 1 cut(s) 542
Sse9I AATT 4 cut(s) 20, 161, 308, 502
SsiI CCGC 3 cut(s) 6, 267, 411
SspMI CTAG 2 cut(s) 243, 552
StyD4I CCNGG 3 cut(s) 273, 417, 475
TaaI ACNGT 4 cut(s) 148, 295, 347, 439
TasI AATT 4 cut(s) 20, 161, 308, 502
TseI GCWGC 8 cut(s) 37, 109, 112, 178, 256, 259, 400, 403
TspDTI ATGAA 1 cut(s) 504
Van91I CCANNNNNTGG 3 cut(s) 40, 181, 331
VpaK11BI GGWCC 4 cut(s) 65, 130, 206, 421
XceI RCATGY 1 cut(s) 542
XcmI CCANNNNNNNNNTGG 1 cut(s) 26
XspI CTAG 2 cut(s) 243, 552
Zsp2I ATGCAT 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.