Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006902

Physical Location & Seq

Genomic Coordinates Reverse (-)

15524794 .. 15526663

Gene Structure 1870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017344

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

ATGGAGAACCAGAACCCACCCTCTGGCTCAGCCCCCCCTGCCCCTGCCCCTGCCCCGCAGAGACCACCAGAATGGTTTCAGTTCCCAAGCCAAGGCTACAGCGAGCAGAAACCTGAGCTCTATTTTTTCACTGAAACGACCAAGAGGAAGGCAGACAAGTGGAAAGATGGCCATACAGCTGGGATCCAAATCACAAGCCAAGATGGTCGGTTAATTGGTCGAAAAAGGAAGTTCAGCTATCATGAAAATCGTAACTCTGATGTGAAGTGGTACCTTGATCAGTATACCACTGAAGAGAACGGTACTTGGGCTGTTTACAAACTGTACACAGGAAAAAGACCTGCCCACCACATAATCTCAGCTGCACAATCATCTCTGTCACAAGACCCGACTGCAAACACTGCTGCGATTGTTCAAGACCATCAATCTCCATCAATGCCTGTGCAGCCTCAGACAATGTTGCAGCAGCTCTTGAATGCCAGTGACCATCAATCTCCATCAATGCCCGTGCAGCCTCAGACAATGTTGCAGCAGCTCTTGAATGCCAGTGACTCATTGAGTACCCCCCCTGCTCAGACAATGCTACACCAAGAGTTACCGGCAGCTGCATCAATGCCCGTTCAGCATCCTACATCACAGCAGGGATTGATTCGTGGTACTAACCCATCTAATACACAACTCTCAGCATGGAACCCCCAAGATGCTGCATTTCCTCTCGGCCAGCACTACTACTTTCCACCCATCCCAATCCTTCCTCAGATCGGGTCTCAATATCTCCCTTGGCTGCTCCAACAAAACTATCAAACTTTCCCAATGCTTCCTCACACCTACCTTCAACCTCGCCTATGGCACAACAACTGTCCGACAATCCCAACATTTCCTCAGACCTTGTTACAACCTGGGATTTCAAGTTCAACAATGTCCGCATGGAACCCCCAATTTTTTCTTGGCCAGCAGCTGGAGCACACAAACATCCCAACAGGTCCAATGCTTCCTCACACCTCCCTTCAAACTGGCCCCCCAGAGCTGCAGCACACCACCATCATGGACCAAGACCCTTCTACAGTTCCAAACCCTCAATTTCTTCTTCGCCAGCAGCTGGAGCACACAAACATTCCAACAGGTCCAATGCTTCCTCACACCTCCCTTCAATCTGAAACTGGCCCCTCAGAGCTGCAGCAGACCGCCATCCTGGACAAAGACCCTTCTACAGTTCCAAACCCTCAATTTCTTCTTCTTCACCAGCTGCAGCTGGAGCACACAAACAGTCCAACAAGTCCAATGCTTCCTCACAGCTCCCTTCAAACTGGCCCCTCAGAGCTGCAGCAGACCGCCATCCTGGACCAAGACCCTTCTACAGTTCCAAACCCTCCTCAACCCACCAACCCTGCATATCCAGGACTTTGGAATGAACAGGACAACAATTCGTTTGATTTGTTTGATATTGAGCAGTTTTTGCATGCACCACCAGCTAGTAACCAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

496

Amino Acids

55.32

Weight (kDa)

5.58

Isoelectric Point (pI)

71.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006902)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09330 FvH4_5g01900 FvH4_5g01900 FvH4_5g05460 FvH4_5g05460 FvH4_5g05460 FvH4_5g05460 FvH4_5g05460 FvH4_5g05460 FvH4_5g05460 FvH4_5g05460 FvH4_6g01630 FvH4_6g01630 FvH4_6g01630 FvH4_6g01630 FvH4_6g01630 FvH4_6g01630 FvH4_6g01630 FvH4_6g01630
rosa_laevigata	RLG00000017344
rosa_roxburghii	Rroxscaffold_2G00145720
rosa_samantha	Rh2AG164600 Rh2BG171700 Rh2CG171200 Rh2DG170100
rosa_wichuraiana	Rw2G008020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	349
Acc65I	GGTACC	1 cut(s)	270
AccB1I	GGYRCC	1 cut(s)	270
AccB7I	CCANNNNNTGG	3 cut(s)	23, 958, 1099
AccI	GTMKAC	1 cut(s)	284
AciI	CCGC	4 cut(s)	56, 924, 1185, 1332
AclWI	GGATC	2 cut(s)	178, 191
AcoI	YGGCCR	3 cut(s)	169, 718, 949
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	5 cut(s)	272, 304, 326, 562, 658
AfiI	CCNNNNNNNGG	5 cut(s)	23, 92, 761, 958, 1099
AgsI	TTSAA	9 cut(s)	416, 475, 541, 836, 909, 915, 1010, 1151, 1304
AjnI	CCWGG	4 cut(s)	898, 1191, 1338, 1396
AloI	GAACNNNNNNTCC	2 cut(s)	895, 927
Alw21I	GWGCWC	4 cut(s)	120, 966, 1107, 1260
Alw26I	GTCTC	2 cut(s)	55, 771
AlwI	GGATC	2 cut(s)	178, 191
AlwNI	CAGNNNCTG	2 cut(s)	958, 1099
AoxI	GGCC	6 cut(s)	169, 718, 949, 1015, 1162, 1309
Asp700I	GAANNNNTTC	1 cut(s)	75
Asp718I	GGTACC	1 cut(s)	270
AspS9I	GGNCC	7 cut(s)	983, 1016, 1048, 1124, 1163, 1310, 1342
AsuHPI	GGTGA	1 cut(s)	1232
AvaII	GGWCC	4 cut(s)	983, 1048, 1124, 1342
BalI	TGGCCA	2 cut(s)	171, 951
BamHI	GGATCC	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	120
Bbv12I	GWGCWC	4 cut(s)	120, 966, 1107, 1260
BciT130I	CCWGG	4 cut(s)	900, 1193, 1340, 1398
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	55, 771
BfaI	CTAG	1 cut(s)	1473
BfmI	CTRYAG	8 cut(s)	97, 1028, 1062, 1175, 1209, 1247, 1322, 1356
BfuAI	ACCTGC	1 cut(s)	349
BlpI	GCTNAGC	1 cut(s)	28
Bme1390I	CCNGG	4 cut(s)	900, 1193, 1340, 1398
Bme18I	GGWCC	4 cut(s)	983, 1048, 1124, 1342
BmgT120I	GGNCC	7 cut(s)	983, 1016, 1048, 1124, 1163, 1310, 1342
BmiI	GGNNCC	7 cut(s)	185, 272, 692, 932, 1018, 1165, 1312
BmrFI	CCNGG	4 cut(s)	900, 1193, 1340, 1398
BmsI	GCATC	3 cut(s)	617, 634, 691
BpmI	CTGGAG	3 cut(s)	980, 1121, 1274
Bpu10I	CCTNAGC	1 cut(s)	114
Bpu1102I	GCTNAGC	1 cut(s)	28
BsaBI	GATNNNNATC	1 cut(s)	188
BsaI	GGTCTC	2 cut(s)	55, 771
BsaJI	CCNNGG	3 cut(s)	91, 779, 899
Bsc4I	CCNNNNNNNGG	5 cut(s)	23, 92, 761, 958, 1099
Bse118I	RCCGGY	1 cut(s)	598
Bse1I	ACTGG	5 cut(s)	480, 546, 1018, 1165, 1312
Bse8I	GATNNNNATC	1 cut(s)	188
BseBI	CCWGG	4 cut(s)	900, 1193, 1340, 1398
BseDI	CCNNGG	3 cut(s)	91, 779, 899
BseGI	GGATG	5 cut(s)	625, 741, 972, 1188, 1335
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	5 cut(s)	23, 92, 761, 958, 1099
BseNI	ACTGG	5 cut(s)	480, 546, 1018, 1165, 1312
BseRI	GAGGAG	1 cut(s)	1362
BseYI	CCCAGC	1 cut(s)	179
BsgI	GTGCAG	3 cut(s)	348, 464, 530
BshFI	GGCC	6 cut(s)	171, 720, 951, 1017, 1164, 1311
BshNI	GGYRCC	1 cut(s)	270
BsiHKAI	GWGCWC	4 cut(s)	120, 966, 1107, 1260
BsiSI	CCGG	1 cut(s)	599
BslI	CCNNNNNNNGG	5 cut(s)	23, 92, 761, 958, 1099
BsmAI	GTCTC	2 cut(s)	55, 771
BsmI	GAATGC	2 cut(s)	481, 547
BsnI	GGCC	6 cut(s)	171, 720, 951, 1017, 1164, 1311
Bso31I	GGTCTC	2 cut(s)	55, 771
Bsp1286I	GDGCHC	4 cut(s)	120, 966, 1107, 1260
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	3 cut(s)	183, 277, 759
Bsp1720I	GCTNAGC	1 cut(s)	28
BspACI	CCGC	4 cut(s)	56, 924, 1185, 1332
BspANI	GGCC	6 cut(s)	171, 720, 951, 1017, 1164, 1311
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	7 cut(s)	185, 272, 692, 932, 1018, 1165, 1312
BspMAI	CTGCAG	4 cut(s)	1032, 1179, 1251, 1326
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	2 cut(s)	178, 191
BspT107I	GGYRCC	1 cut(s)	270
BspTNI	GGTCTC	2 cut(s)	55, 771
BsrFI	RCCGGY	1 cut(s)	598
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	5 cut(s)	480, 546, 1018, 1165, 1312
BssAI	RCCGGY	1 cut(s)	598
BssECI	CCNNGG	3 cut(s)	91, 779, 899
BssMI	GATC	3 cut(s)	183, 277, 759
BssNAI	GTATAC	1 cut(s)	285
BssT1I	CCWWGG	2 cut(s)	91, 779
Bst1107I	GTATAC	1 cut(s)	285
Bst2UI	CCWGG	4 cut(s)	900, 1193, 1340, 1398
Bst4CI	ACNGT	7 cut(s)	302, 324, 860, 1066, 1213, 1268, 1360
Bst6I	CTCTTC	1 cut(s)	288
BstAPI	GCANNNNNTGC	2 cut(s)	401, 1456
BstAUI	TGTACA	1 cut(s)	324
BstC8I	GCNNGC	5 cut(s)	104, 722, 953, 1094, 1461
BstF5I	GGATG	5 cut(s)	625, 741, 972, 1188, 1335
BstKTI	GATC	3 cut(s)	186, 280, 762
BstMAI	GTCTC	2 cut(s)	55, 771
BstMBI	GATC	3 cut(s)	183, 277, 759
BstNI	CCWGG	4 cut(s)	900, 1193, 1340, 1398
BstNSI	RCATGY	1 cut(s)	1463
BstSCI	CCNGG	4 cut(s)	898, 1191, 1338, 1396
BstSFI	CTRYAG	8 cut(s)	97, 1028, 1062, 1175, 1209, 1247, 1322, 1356
BstX2I	RGATCY	1 cut(s)	183
BstXI	CCANNNNNNTGG	4 cut(s)	72, 179, 1045, 1404
BstYI	RGATCY	1 cut(s)	183
BstZ17I	GTATAC	1 cut(s)	285
BsuRI	GGCC	6 cut(s)	171, 720, 951, 1017, 1164, 1311
BtsCI	GGATG	5 cut(s)	625, 741, 972, 1188, 1335
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	5 cut(s)	129, 288, 399, 487, 553
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	5 cut(s)	104, 722, 953, 1094, 1461
CaiI	CAGNNNCTG	2 cut(s)	958, 1099
CciI	TCATGA	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	598
Cfr13I	GGNCC	7 cut(s)	983, 1016, 1048, 1124, 1163, 1310, 1342
Csp6I	GTAC	5 cut(s)	271, 303, 325, 561, 657
CviAII	CATG	5 cut(s)	242, 687, 927, 1045, 1460
CviQI	GTAC	5 cut(s)	271, 303, 325, 561, 657
DpnI	GATC	3 cut(s)	185, 279, 761
DpnII	GATC	3 cut(s)	183, 277, 759
EaeI	YGGCCR	3 cut(s)	169, 718, 949
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	2 cut(s)	91, 779
Eco24I	GRGCYC	1 cut(s)	120
Eco31I	GGTCTC	2 cut(s)	55, 771
Eco47I	GGWCC	4 cut(s)	983, 1048, 1124, 1342
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	312
EcoICRI	GAGCTC	1 cut(s)	118
EcoRII	CCWGG	4 cut(s)	898, 1191, 1338, 1396
EcoT14I	CCWWGG	2 cut(s)	91, 779
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	2 cut(s)	91, 779
FaeI	CATG	5 cut(s)	245, 690, 930, 1048, 1463
FatI	CATG	5 cut(s)	241, 686, 926, 1044, 1459
FauI	CCCGC	1 cut(s)	63
FbaI	TGATCA	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	284
FokI	GGATG	5 cut(s)	612, 728, 959, 1175, 1322
FriOI	GRGCYC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	1473
GsaI	CCCAGC	1 cut(s)	183
GsuI	CTGGAG	3 cut(s)	980, 1121, 1274
HaeIII	GGCC	6 cut(s)	171, 720, 951, 1017, 1164, 1311
HapII	CCGG	1 cut(s)	599
Hin1II	CATG	5 cut(s)	245, 690, 930, 1048, 1463
HinfI	GANTC	2 cut(s)	551, 649
HpaII	CCGG	1 cut(s)	599
HphI	GGTGA	1 cut(s)	1232
Hpy166II	GTNNAC	3 cut(s)	285, 316, 327
Hpy188III	TCNNGA	4 cut(s)	242, 416, 472, 538
Hpy8I	GTNNAC	3 cut(s)	285, 316, 327
HpyAV	CCTTC	9 cut(s)	142, 761, 842, 1016, 1068, 1157, 1215, 1310, 1362
HpyCH4III	ACNGT	7 cut(s)	302, 324, 860, 1066, 1213, 1268, 1360
Hsp92II	CATG	5 cut(s)	245, 690, 930, 1048, 1463
KpnI	GGTACC	1 cut(s)	274
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	183, 277, 759
LmnI	GCTCC	5 cut(s)	792, 961, 1102, 1255, 1301
LweI	GCATC	3 cut(s)	617, 634, 691
MaeI	CTAG	1 cut(s)	1473
MaeIII	GTNAC	7 cut(s)	251, 378, 482, 548, 594, 891, 1475
MalI	GATC	3 cut(s)	185, 279, 761
MboI	GATC	3 cut(s)	183, 277, 759
MboII	GAAGA	6 cut(s)	305, 1076, 1079, 1223, 1226, 1229
MflI	RGATCY	1 cut(s)	183
MhlI	GDGCHC	4 cut(s)	120, 966, 1107, 1260
MlsI	TGGCCA	2 cut(s)	171, 951
MluCI	AATT	5 cut(s)	213, 938, 1079, 1226, 1423
MluNI	TGGCCA	2 cut(s)	171, 951
MlyI	GAGTC	1 cut(s)	545
MmeI	TCCRAC	4 cut(s)	814, 887, 1142, 1295
Mox20I	TGGCCA	2 cut(s)	171, 951
MroXI	GAANNNNTTC	1 cut(s)	75
MscI	TGGCCA	2 cut(s)	171, 951
MseI	TTAA	1 cut(s)	212
MslI	CAYNNNNRTG	2 cut(s)	70, 1043
Msp20I	TGGCCA	2 cut(s)	171, 951
MspA1I	CMGCKG	7 cut(s)	179, 362, 605, 958, 1099, 1246, 1252
MspI	CCGG	1 cut(s)	599
MspR9I	CCNGG	4 cut(s)	900, 1193, 1340, 1398
Mva1269I	GAATGC	2 cut(s)	481, 547
MvaI	CCWGG	4 cut(s)	900, 1193, 1340, 1398
NdeII	GATC	3 cut(s)	183, 277, 759
NlaIII	CATG	5 cut(s)	245, 690, 930, 1048, 1463
NlaIV	GGNNCC	7 cut(s)	185, 272, 692, 932, 1018, 1165, 1312
NmeAIII	GCCGAG	1 cut(s)	696
NmuCI	GTSAC	3 cut(s)	378, 482, 548
NspI	RCATGY	1 cut(s)	1463
PaeI	GCATGC	1 cut(s)	1463
PagI	TCATGA	1 cut(s)	241
PctI	GAATGC	2 cut(s)	481, 547
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	649
PflMI	CCANNNNNTGG	3 cut(s)	23, 958, 1099
PfoI	TCCNGGA	3 cut(s)	1191, 1338, 1396
PleI	GAGTC	1 cut(s)	545
PpsI	GAGTC	1 cut(s)	545
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	4 cut(s)	898, 1191, 1338, 1396
PspFI	CCCAGC	1 cut(s)	179
PspGI	CCWGG	4 cut(s)	898, 1191, 1338, 1396
PspN4I	GGNNCC	7 cut(s)	185, 272, 692, 932, 1018, 1165, 1312
PspPI	GGNCC	7 cut(s)	983, 1016, 1048, 1124, 1163, 1310, 1342
PstI	CTGCAG	4 cut(s)	1032, 1179, 1251, 1326
PstNI	CAGNNNCTG	2 cut(s)	958, 1099
PsuI	RGATCY	1 cut(s)	183
PvuII	CAGCTG	7 cut(s)	179, 362, 605, 958, 1099, 1246, 1252
RsaI	GTAC	5 cut(s)	272, 304, 326, 562, 658
RsaNI	GTAC	5 cut(s)	271, 303, 325, 561, 657
RseI	CAYNNNNRTG	2 cut(s)	70, 1043
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	212
Sau3AI	GATC	3 cut(s)	183, 277, 759
Sau96I	GGNCC	7 cut(s)	983, 1016, 1048, 1124, 1163, 1310, 1342
SchI	GAGTC	1 cut(s)	545
ScrFI	CCNGG	4 cut(s)	900, 1193, 1340, 1398
SduI	GDGCHC	4 cut(s)	120, 966, 1107, 1260
SfaNI	GCATC	3 cut(s)	617, 634, 691
SfcI	CTRYAG	8 cut(s)	97, 1028, 1062, 1175, 1209, 1247, 1322, 1356
SinI	GGWCC	4 cut(s)	983, 1048, 1124, 1342
SmiMI	CAYNNNNRTG	2 cut(s)	70, 1043
SphI	GCATGC	1 cut(s)	1463
Sse9I	AATT	5 cut(s)	213, 938, 1079, 1226, 1423
SsiI	CCGC	4 cut(s)	56, 924, 1185, 1332
SspMI	CTAG	1 cut(s)	1473
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	4 cut(s)	898, 1191, 1338, 1396
StyI	CCWWGG	2 cut(s)	91, 779
TaaI	ACNGT	7 cut(s)	302, 324, 860, 1066, 1213, 1268, 1360
TaqI	TCGA	1 cut(s)	220
TasI	AATT	5 cut(s)	213, 938, 1079, 1226, 1423
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	649
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TscAI	CASTG	5 cut(s)	136, 295, 406, 487, 553
TseFI	GTSAC	3 cut(s)	378, 482, 548
Tsp45I	GTSAC	3 cut(s)	378, 482, 548
TspDTI	ATGAA	2 cut(s)	258, 1425
TspRI	CASTG	5 cut(s)	136, 295, 406, 487, 553
Van91I	CCANNNNNTGG	3 cut(s)	23, 958, 1099
VpaK11BI	GGWCC	4 cut(s)	983, 1048, 1124, 1342
XceI	RCATGY	1 cut(s)	1463
XcmI	CCANNNNNNNNNTGG	1 cut(s)	944
XmiI	GTMKAC	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	1 cut(s)	1473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.