Rh2CG171200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006902
Physical Location & Seq
Forward (+)
15320710 .. 15327352
6643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG171200.1

Sequence Viewer

Length: 438 bp
ATGGCAAGCCAAGGCTACAGCGAGCAGAAACCTGAGCTCTATTTTTTCACTGGAACGACTAAGAGGAAGGCAGACAAGTGGAAAGATGGCCATACAGCTGGGATCCAAATCACAGGCCAAGATGGTCGGGTAATTGGTCGAAAAAGGAAGTTCAGCTATCATGAAAATCGTAACTCTGATGTGAAGTGGTACCTTGATCAGTATACCACTGAAGAGAACGGTACTCGGGCTGTTTACAAACTGTACACAGGAAAAAGACCTGCCCACCGCACAATCTCAGCTGCACAATCATCTCTGTCACAAGACCCGACAACTCAGACTGCAAACATTGCTGAATGGTTCAGAGATTTACAGAAAGGCAAGGTTGGTCATGTTAGCCAACGACATCGGAAGTACTCCGGTGAGACTGTTATTGTTGAGCCTCCTAAACCCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.6

Weight (kDa)

9.83

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 268
Acc65I GGTACC 1 cut(s) 189
AccB1I GGYRCC 1 cut(s) 189
AccI GTMKAC 1 cut(s) 203
AciI CCGC 1 cut(s) 268
AclWI GGATC 2 cut(s) 97, 110
AcoI YGGCCR 1 cut(s) 88
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 4 cut(s) 191, 223, 245, 395
AluBI AGCT 4 cut(s) 37, 98, 156, 281
AluI AGCT 4 cut(s) 37, 98, 156, 281
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 398
AlwI GGATC 2 cut(s) 97, 110
Ama87I CYCGRG 1 cut(s) 225
AoxI GGCC 2 cut(s) 88, 115
ApeKI GCWGC 1 cut(s) 281
Asp718I GGTACC 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 413
AvaI CYCGRG 1 cut(s) 225
BalI TGGCCA 1 cut(s) 90
BamHI GGATCC 1 cut(s) 102
BanI GGYRCC 1 cut(s) 189
BanII GRGCYC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 268
BccI CCATC 2 cut(s) 80, 116
BclI TGATCA 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 398
BfmI CTRYAG 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 268
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
BmcAI AGTACT 1 cut(s) 395
BmeT110I CYCGRG 1 cut(s) 225
BmiI GGNNCC 2 cut(s) 104, 191
BmrI ACTGGG 1 cut(s) 426
BmuI ACTGGG 1 cut(s) 426
Bpu10I CCTNAGC 1 cut(s) 33
BsaBI GATNNNNATC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 398
Bse1I ACTGG 2 cut(s) 55, 432
Bse3DI GCAATG 1 cut(s) 327
Bse8I GATNNNNATC 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 107
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 3 cut(s) 24, 291, 329
BseNI ACTGG 2 cut(s) 55, 432
BseXI GCAGC 1 cut(s) 268
BseYI CCCAGC 1 cut(s) 98
BsgI GTGCAG 1 cut(s) 267
BshFI GGCC 2 cut(s) 90, 117
BshNI GGYRCC 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 39
BsiHKCI CYCGRG 1 cut(s) 225
BsiSI CCGG 1 cut(s) 399
BsmAI GTCTC 1 cut(s) 398
BsnI GGCC 2 cut(s) 90, 117
BsoBI CYCGRG 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 39
Bsp1407I TGTACA 1 cut(s) 243
Bsp143I GATC 2 cut(s) 102, 196
BspACI CCGC 1 cut(s) 268
BspANI GGCC 2 cut(s) 90, 117
BspCNI CTCAG 3 cut(s) 25, 290, 328
BspHI TCATGA 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 104, 191
BspMI ACCTGC 1 cut(s) 268
BspPI GGATC 2 cut(s) 97, 110
BspT107I GGYRCC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 327
BsrGI TGTACA 1 cut(s) 243
BsrI ACTGG 2 cut(s) 55, 432
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 2 cut(s) 102, 196
BssNAI GTATAC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 10
Bst1107I GTATAC 1 cut(s) 204
Bst4CI ACNGT 3 cut(s) 221, 243, 409
Bst6I CTCTTC 1 cut(s) 207
BstAPI GCANNNNNTGC 1 cut(s) 329
BstAUI TGTACA 1 cut(s) 243
BstC8I GCNNGC 2 cut(s) 7, 23
BstDEI CTNAG 4 cut(s) 33, 60, 277, 315
BstKTI GATC 2 cut(s) 105, 199
BstMAI GTCTC 1 cut(s) 398
BstMBI GATC 2 cut(s) 102, 196
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstSFI CTRYAG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 268
BstX2I RGATCY 1 cut(s) 102
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 1 cut(s) 102
BstZ17I GTATAC 1 cut(s) 204
BsuRI GGCC 2 cut(s) 90, 117
BtsIMutI CAGTG 2 cut(s) 48, 207
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 2 cut(s) 7, 23
CciI TCATGA 1 cut(s) 160
Csp6I GTAC 4 cut(s) 190, 222, 244, 394
CviAII CATG 2 cut(s) 161, 371
CviQI GTAC 4 cut(s) 190, 222, 244, 394
DdeI CTNAG 4 cut(s) 33, 60, 277, 315
DpnI GATC 2 cut(s) 104, 198
DpnII GATC 2 cut(s) 102, 196
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 231
Eco88I CYCGRG 1 cut(s) 225
EcoICRI GAGCTC 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 2 cut(s) 164, 374
FaiI YATR 4 cut(s) 93, 162, 204, 372
FatI CATG 2 cut(s) 160, 370
FbaI TGATCA 1 cut(s) 196
FblI GTMKAC 1 cut(s) 203
Fnu4HI GCNGC 1 cut(s) 282
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 282
GluI GCNGC 1 cut(s) 282
GsaI CCCAGC 1 cut(s) 102
HaeIII GGCC 2 cut(s) 90, 117
HapII CCGG 1 cut(s) 399
Hin1II CATG 2 cut(s) 164, 374
HpaII CCGG 1 cut(s) 399
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 3 cut(s) 204, 235, 246
Hpy188I TCNGA 4 cut(s) 178, 318, 344, 390
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 3 cut(s) 204, 235, 246
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 3 cut(s) 221, 243, 409
HpyCH4V TGCA 2 cut(s) 284, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 4 cut(s) 33, 60, 277, 315
Hsp92II CATG 2 cut(s) 164, 374
KpnI GGTACC 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 2 cut(s) 102, 196
LpnPI CCDG 7 cut(s) 36, 45, 84, 99, 234, 273, 412
Lsp1109I GCAGC 1 cut(s) 268
MaeIII GTNAC 2 cut(s) 170, 297
MalI GATC 2 cut(s) 104, 198
MboI GATC 2 cut(s) 102, 196
MboII GAAGA 1 cut(s) 224
MflI RGATCY 1 cut(s) 102
MhlI GDGCHC 1 cut(s) 39
MlsI TGGCCA 1 cut(s) 90
MluCI AATT 1 cut(s) 132
MluNI TGGCCA 1 cut(s) 90
MnlI CCTC 2 cut(s) 57, 432
Mox20I TGGCCA 1 cut(s) 90
MscI TGGCCA 1 cut(s) 90
Msp20I TGGCCA 1 cut(s) 90
MspA1I CMGCKG 2 cut(s) 98, 281
MspI CCGG 1 cut(s) 399
MwoI GCNNNNNNNGC 1 cut(s) 329
NdeII GATC 2 cut(s) 102, 196
NlaIII CATG 2 cut(s) 164, 374
NlaIV GGNNCC 2 cut(s) 104, 191
NmuCI GTSAC 1 cut(s) 297
PagI TCATGA 1 cut(s) 160
PkrI GCNGC 1 cut(s) 283
Psp124BI GAGCTC 1 cut(s) 39
PspFI CCCAGC 1 cut(s) 98
PspN4I GGNNCC 2 cut(s) 104, 191
PsuI RGATCY 1 cut(s) 102
PvuII CAGCTG 2 cut(s) 98, 281
RsaI GTAC 4 cut(s) 191, 223, 245, 395
RsaNI GTAC 4 cut(s) 190, 222, 244, 394
SacI GAGCTC 1 cut(s) 39
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 2 cut(s) 102, 196
ScaI AGTACT 1 cut(s) 395
SduI GDGCHC 1 cut(s) 39
SetI ASST 8 cut(s) 34, 39, 100, 158, 195, 262, 283, 366
SfcI CTRYAG 1 cut(s) 16
Sse9I AATT 1 cut(s) 132
SsiI CCGC 1 cut(s) 268
SstI GAGCTC 1 cut(s) 39
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 3 cut(s) 221, 243, 409
TaqI TCGA 1 cut(s) 139
TasI AATT 1 cut(s) 132
TatI WGTACW 2 cut(s) 243, 393
TscAI CASTG 2 cut(s) 55, 214
TseFI GTSAC 1 cut(s) 297
TseI GCWGC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 297
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 2 cut(s) 55, 214
XmiI GTMKAC 1 cut(s) 203
ZrmI AGTACT 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.