Rw2G008020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0006902
Physical Location & Seq
Reverse (-)
7860116 .. 7862818
2703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G008020.1

Sequence Viewer

Length: 744 bp
ATGAATGATATCATCGATGACGTGGTGGATCTGTTTATCCAAACCCCATCATCTATCGCAAGTACTTATGGCTACAGTGAAGAGAAGAGTGAGCTGTACTTCTTTGGTCAAAAAACTCCAATGAGGAATTGGATTTCAGACTCTAAAAGGGAAGTAATCACAGGAGATACTAACCAGGTCATTGGATTCAAAAAAAATTTCCGCTATGCGCGTAATCGAGACTGCCAGCACAAATGGGTTTTAGACAGGTACACAGTCGAAATAGGTACCGTGATGGCTGCAGTCTTTAAACTGTATGAGCTCAGCCGAGGCAAGAGTTACCATGGTCAGCAGACTTCTCTCACCTCCTCTACAACTGATCCGGCTCTTGCCTCGTCGCTGCCTCCACCAGAACAGCAAGCATTCATTCAGCAGACTTCAACAGGCCCCGTTCTCCCCTCCTCGCTGCCTCCATCAGAACAGCAAGCATTCATTCAGCAGACTTCAACCGGCCCGGCCCTCCCCTCCTCGCTGCCTCCACCAGAACAGCAAGCATTCATTTGGCAGACTTCAACTGGCCCGACCCTCCCTTCCTCTTCAACCAGCCAGGCTCTTGCCTCCTCGCTGCCTCCAGAGCTGCAGCAAGCACTGATTCCATTTATTCAGCAACAGATACATAACTATTTCCTCTTCGATGATCCAATTGACTTGTCAATTGTTGATAATGATAATGTCGATGGTCCAGAAGGTAACGACGGAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

27.31

Weight (kDa)

4.53

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 266
AccB1I GGYRCC 1 cut(s) 266
AccII CGCG 1 cut(s) 211
AciI CCGC 1 cut(s) 202
AclWI GGATC 3 cut(s) 36, 353, 671
AcsI RAATTY 1 cut(s) 196
AfaI GTAC 4 cut(s) 64, 98, 251, 268
AgsI TTSAA 5 cut(s) 190, 420, 486, 552, 579
AjiI CACGTC 1 cut(s) 22
AjnI CCWGG 2 cut(s) 174, 585
AluBI AGCT 3 cut(s) 94, 301, 616
AluI AGCT 3 cut(s) 94, 301, 616
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 1 cut(s) 213
AlwI GGATC 3 cut(s) 36, 353, 671
AoxI GGCC 4 cut(s) 424, 490, 495, 556
ApeKI GCWGC 7 cut(s) 278, 379, 445, 511, 604, 616, 619
ApoI RAATTY 1 cut(s) 196
Asp718I GGTACC 1 cut(s) 266
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 5 cut(s) 425, 491, 496, 557, 719
AsuC2I CCSGG 1 cut(s) 494
AsuHPI GGTGA 1 cut(s) 334
AvaII GGWCC 1 cut(s) 719
BanI GGYRCC 1 cut(s) 266
BanII GRGCYC 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 7 cut(s) 265, 366, 432, 498, 591, 603, 631
BccI CCATC 4 cut(s) 55, 268, 460, 710
BciT130I CCWGG 2 cut(s) 176, 587
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 1 cut(s) 213
BfmI CTRYAG 3 cut(s) 73, 279, 617
BisI GCNGC 7 cut(s) 279, 380, 446, 512, 605, 617, 620
BlpI GCTNAGC 1 cut(s) 302
BlsI GCNGC 7 cut(s) 280, 381, 447, 513, 606, 618, 621
BmcAI AGTACT 1 cut(s) 64
Bme1390I CCNGG 3 cut(s) 176, 494, 587
Bme18I GGWCC 1 cut(s) 719
BmgBI CACGTC 1 cut(s) 22
BmgT120I GGNCC 5 cut(s) 425, 491, 496, 557, 719
BmiI GGNNCC 2 cut(s) 268, 427
BmrFI CCNGG 3 cut(s) 176, 494, 587
BpmI CTGGAG 1 cut(s) 594
Bpu1102I GCTNAGC 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 494
Bsa29I ATCGAT 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 307, 322
Bse118I RCCGGY 1 cut(s) 488
Bse1I ACTGG 1 cut(s) 559
BseBI CCWGG 2 cut(s) 176, 587
BseCI ATCGAT 1 cut(s) 15
BseDI CCNNGG 2 cut(s) 307, 322
BseMII CTCAG 1 cut(s) 316
BseNI ACTGG 1 cut(s) 559
BseRI GAGGAG 4 cut(s) 337, 430, 496, 589
BseXI GCAGC 7 cut(s) 265, 366, 432, 498, 591, 603, 631
Bsh1236I CGCG 1 cut(s) 211
BshFI GGCC 4 cut(s) 426, 492, 497, 558
BshNI GGYRCC 1 cut(s) 266
BshVI ATCGAT 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 3 cut(s) 362, 489, 494
BsmAI GTCTC 1 cut(s) 213
BsmI GAATGC 3 cut(s) 401, 467, 533
BsnI GGCC 4 cut(s) 426, 492, 497, 558
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 3 cut(s) 28, 358, 676
Bsp1720I GCTNAGC 1 cut(s) 302
Bsp19I CCATGG 1 cut(s) 322
BspACI CCGC 1 cut(s) 202
BspANI GGCC 4 cut(s) 426, 492, 497, 558
BspCNI CTCAG 1 cut(s) 315
BspDI ATCGAT 1 cut(s) 15
BspFNI CGCG 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 268, 427
BspMAI CTGCAG 2 cut(s) 283, 621
BspPI GGATC 3 cut(s) 36, 353, 671
BspT107I GGYRCC 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 488
BsrI ACTGG 1 cut(s) 559
BssAI RCCGGY 1 cut(s) 488
BssECI CCNNGG 2 cut(s) 307, 322
BssMI GATC 3 cut(s) 28, 358, 676
BssT1I CCWWGG 1 cut(s) 322
Bst2UI CCWGG 2 cut(s) 176, 587
Bst4CI ACNGT 4 cut(s) 77, 256, 271, 294
Bst6I CTCTTC 4 cut(s) 75, 80, 580, 674
BstC8I GCNNGC 5 cut(s) 227, 399, 465, 531, 624
BstDEI CTNAG 1 cut(s) 302
BstDSI CCRYGG 1 cut(s) 322
BstFNI CGCG 1 cut(s) 211
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 3 cut(s) 31, 361, 679
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 3 cut(s) 28, 358, 676
BstMWI GCNNNNNNNGC 1 cut(s) 613
BstNI CCWGG 2 cut(s) 176, 587
BstSCI CCNGG 3 cut(s) 174, 492, 585
BstSFI CTRYAG 3 cut(s) 73, 279, 617
BstUI CGCG 1 cut(s) 211
BstV1I GCAGC 7 cut(s) 265, 366, 432, 498, 591, 603, 631
BstX2I RGATCY 1 cut(s) 28
BstXI CCANNNNNNTGG 1 cut(s) 182
BstYI RGATCY 1 cut(s) 28
Bsu15I ATCGAT 1 cut(s) 15
BsuRI GGCC 4 cut(s) 426, 492, 497, 558
BsuTUI ATCGAT 1 cut(s) 15
BtgI CCRYGG 1 cut(s) 322
BtrI CACGTC 1 cut(s) 22
BtsIMutI CAGTG 2 cut(s) 82, 626
Cac8I GCNNGC 5 cut(s) 227, 399, 465, 531, 624
CfoI GCGC 1 cut(s) 211
Cfr10I RCCGGY 1 cut(s) 488
Cfr13I GGNCC 5 cut(s) 425, 491, 496, 557, 719
ClaI ATCGAT 1 cut(s) 15
CsiI ACCWGGT 1 cut(s) 174
Csp6I GTAC 4 cut(s) 63, 97, 250, 267
CviAII CATG 1 cut(s) 323
CviQI GTAC 4 cut(s) 63, 97, 250, 267
DdeI CTNAG 1 cut(s) 302
DpnI GATC 3 cut(s) 30, 360, 678
DpnII GATC 3 cut(s) 28, 358, 676
DraI TTTAAA 1 cut(s) 289
Eam1104I CTCTTC 4 cut(s) 75, 80, 580, 674
EarI CTCTTC 4 cut(s) 75, 80, 580, 674
Ecl136II GAGCTC 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 303
Eco32I GATATC 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 719
Eco53kI GAGCTC 1 cut(s) 301
EcoICRI GAGCTC 1 cut(s) 301
EcoO109I RGGNCCY 1 cut(s) 425
EcoRII CCWGG 2 cut(s) 174, 585
EcoRV GATATC 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 322
FaeI CATG 1 cut(s) 326
FaiI YATR 5 cut(s) 69, 207, 297, 324, 657
FatI CATG 1 cut(s) 322
Fnu4HI GCNGC 7 cut(s) 279, 380, 446, 512, 605, 617, 620
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 7 cut(s) 279, 380, 446, 512, 605, 617, 620
GlaI GCGC 1 cut(s) 210
GluI GCNGC 7 cut(s) 279, 380, 446, 512, 605, 617, 620
GsuI CTGGAG 1 cut(s) 594
HaeIII GGCC 4 cut(s) 426, 492, 497, 558
HapII CCGG 3 cut(s) 362, 489, 494
HhaI GCGC 1 cut(s) 211
Hin1II CATG 1 cut(s) 326
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HinfI GANTC 4 cut(s) 140, 186, 631, 738
HpaII CCGG 3 cut(s) 362, 489, 494
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 1 cut(s) 252
Hpy188I TCNGA 3 cut(s) 139, 457, 743
Hpy188III TCNNGA 3 cut(s) 218, 611, 722
Hpy8I GTNNAC 1 cut(s) 252
Hpy99I CGWCG 2 cut(s) 379, 737
HpyAV CCTTC 2 cut(s) 579, 719
HpyCH4III ACNGT 4 cut(s) 77, 256, 271, 294
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 2 cut(s) 281, 619
HpyF10VI GCNNNNNNNGC 1 cut(s) 613
HpyF3I CTNAG 1 cut(s) 302
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 1 cut(s) 326
HspAI GCGC 1 cut(s) 209
KpnI GGTACC 1 cut(s) 270
Kzo9I GATC 3 cut(s) 28, 358, 676
Lsp1109I GCAGC 7 cut(s) 265, 366, 432, 498, 591, 603, 631
MabI ACCWGGT 1 cut(s) 174
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 2 cut(s) 317, 728
MalI GATC 3 cut(s) 30, 360, 678
MboI GATC 3 cut(s) 28, 358, 676
MboII GAAGA 4 cut(s) 92, 97, 567, 661
MfeI CAATTG 2 cut(s) 681, 693
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 4 cut(s) 127, 196, 681, 693
MlyI GAGTC 1 cut(s) 134
MseI TTAA 1 cut(s) 288
MspI CCGG 3 cut(s) 362, 489, 494
MspR9I CCNGG 3 cut(s) 176, 494, 587
MunI CAATTG 2 cut(s) 681, 693
Mva1269I GAATGC 3 cut(s) 401, 467, 533
MvaI CCWGG 2 cut(s) 176, 587
MvnI CGCG 1 cut(s) 211
MwoI GCNNNNNNNGC 1 cut(s) 613
NciI CCSGG 1 cut(s) 494
NcoI CCATGG 1 cut(s) 322
NdeII GATC 3 cut(s) 28, 358, 676
NlaIII CATG 1 cut(s) 326
NlaIV GGNNCC 2 cut(s) 268, 427
NmeAIII GCCGAG 1 cut(s) 332
PctI GAATGC 3 cut(s) 401, 467, 533
PfeI GAWTC 2 cut(s) 186, 631
PflFI GACNNNGTC 1 cut(s) 737
PkrI GCNGC 7 cut(s) 280, 381, 447, 513, 606, 618, 621
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Psp124BI GAGCTC 1 cut(s) 303
Psp6I CCWGG 2 cut(s) 174, 585
PspGI CCWGG 2 cut(s) 174, 585
PspN4I GGNNCC 2 cut(s) 268, 427
PspPI GGNCC 5 cut(s) 425, 491, 496, 557, 719
PstI CTGCAG 2 cut(s) 283, 621
PsuI RGATCY 1 cut(s) 28
PsyI GACNNNGTC 1 cut(s) 737
RsaI GTAC 4 cut(s) 64, 98, 251, 268
RsaNI GTAC 4 cut(s) 63, 97, 250, 267
SacI GAGCTC 1 cut(s) 303
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 7 cut(s) 279, 380, 446, 512, 605, 617, 620
Sau3AI GATC 3 cut(s) 28, 358, 676
Sau96I GGNCC 5 cut(s) 425, 491, 496, 557, 719
ScaI AGTACT 1 cut(s) 64
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 3 cut(s) 176, 494, 587
SduI GDGCHC 1 cut(s) 303
SetI ASST 9 cut(s) 24, 96, 180, 251, 268, 303, 347, 618, 730
SexAI ACCWGGT 1 cut(s) 174
SfcI CTRYAG 3 cut(s) 73, 279, 617
SinI GGWCC 1 cut(s) 719
Sse9I AATT 4 cut(s) 127, 196, 681, 693
SsiI CCGC 1 cut(s) 202
SstI GAGCTC 1 cut(s) 303
StyD4I CCNGG 3 cut(s) 174, 492, 585
StyI CCWWGG 1 cut(s) 322
TaaI ACNGT 4 cut(s) 77, 256, 271, 294
TaiI ACGT 1 cut(s) 24
TaqI TCGA 5 cut(s) 15, 217, 258, 672, 714
TasI AATT 4 cut(s) 127, 196, 681, 693
TatI WGTACW 2 cut(s) 62, 96
TfiI GAWTC 2 cut(s) 186, 631
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 2 cut(s) 82, 633
TseI GCWGC 7 cut(s) 278, 379, 445, 511, 604, 616, 619
TspDTI ATGAA 4 cut(s) 17, 394, 460, 526
TspRI CASTG 2 cut(s) 82, 633
Tth111I GACNNNGTC 1 cut(s) 737
VpaK11BI GGWCC 1 cut(s) 719
XapI RAATTY 1 cut(s) 196
XcmI CCANNNNNNNNNTGG 1 cut(s) 126
ZrmI AGTACT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.