Rroxscaffold_2G00145720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006902
Physical Location & Seq
Forward (+)
83626305 .. 83631017
4713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00145720.1

Sequence Viewer

Length: 894 bp
ATGGCGTTATTAACGGAAGGCATCGATATTGTGTTAGATTTCAATGTTGAGATTGTATTTTTTGAATTTGATTATGTACGAGAAGTTGTGAAGTCGGGTGATTACTACTACCCCGTGCTTCGTGAAGAGAAGAGTGAGCTGTACTTCTTTGGTAAAAAAACTCCGATGAGGAATTGGATTTCAGACTCTAAAAAAGAAGTAATCACAGGAGATACTAACCAGGTCATTGGATTCAAAAAACATTTCCGCTATGCGCGCAATCGAGAATGCCAGCACAAATGGGTTTTAGACAGGTACACAGTCGAAAGAGATACCGTGATGGCTGCAGTCTTTAAACTGTATGAGCTCAGCCGAGGCAAGAGTTACCATGGTCAGCAGACTTCTCTCACCTCCTCTACAACTGATCCGGCTCTTGCCTCCTCGCTGCCTCCACCAGAACAGCAATCATTCATTCAGCAGACTTCAACAGGCCCGGTTCTCCCCTCCTCGCTTTCTCCACCAGAACAGCAAGCATTCATTCAGCAGACTTTAACCAGCCCGGTTCTCCCCTCCTCGCTGCCTCCACCAGAACAGCAAGCATTCATTCAGCAAACTTCAACAGGCCCGACCCTCCCCTCCTCGCTGCCTCCATCAGAACAGCAAGCATTCATTCAGCAGACGCTGCCTCTACCAGAACAGCAAGCATTCATTCGGCAGACTTCAACTGGCCCGGGCCTCCCCTCCTCTTCAACCAGTCCGGCTCTTGCATCCTTGCTACCTCCAGAGCTGCAGCAAGCACTGATTCCATTTATTCAGCAACAGATATATAACTATTTCCTCTTCGATGATCAAATTGACTTGTCAATTGTTGATAATGATAATGTTGATGGTCCAGAAGGTAACGACGGAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

297

Amino Acids

33.3

Weight (kDa)

4.66

Isoelectric Point (pI)

56.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 256
AciI CCGC 1 cut(s) 247
AclWI GGATC 1 cut(s) 398
AcsI RAATTY 1 cut(s) 65
AfaI GTAC 3 cut(s) 78, 143, 296
AgsI TTSAA 7 cut(s) 43, 65, 235, 465, 597, 702, 729
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 3 cut(s) 139, 346, 766
AluI AGCT 3 cut(s) 139, 346, 766
Alw21I GWGCWC 1 cut(s) 348
AlwI GGATC 1 cut(s) 398
AlwNI CAGNNNCTG 1 cut(s) 661
Ama87I CYCGRG 1 cut(s) 709
AoxI GGCC 4 cut(s) 469, 601, 706, 712
ApeKI GCWGC 7 cut(s) 323, 424, 556, 622, 661, 766, 769
ApoI RAATTY 1 cut(s) 65
AspLEI GCGC 2 cut(s) 256, 258
AspS9I GGNCC 5 cut(s) 470, 602, 707, 712, 869
AsuC2I CCSGG 4 cut(s) 473, 539, 710, 711
AsuHPI GGTGA 2 cut(s) 110, 379
AvaI CYCGRG 1 cut(s) 709
AvaII GGWCC 1 cut(s) 869
BanII GRGCYC 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 7 cut(s) 310, 411, 543, 609, 648, 753, 781
BccI CCATC 3 cut(s) 313, 637, 860
BciT130I CCWGG 1 cut(s) 221
BclI TGATCA 1 cut(s) 826
BcnI CCSGG 4 cut(s) 473, 539, 710, 711
BfmI CTRYAG 2 cut(s) 324, 767
BisI GCNGC 7 cut(s) 324, 425, 557, 623, 662, 767, 770
BlpI GCTNAGC 1 cut(s) 347
BlsI GCNGC 7 cut(s) 325, 426, 558, 624, 663, 768, 771
Bme1390I CCNGG 5 cut(s) 221, 473, 539, 710, 711
Bme18I GGWCC 1 cut(s) 869
BmeT110I CYCGRG 1 cut(s) 709
BmgT120I GGNCC 5 cut(s) 470, 602, 707, 712, 869
BmrFI CCNGG 5 cut(s) 221, 473, 539, 710, 711
BmsI GCATC 2 cut(s) 30, 755
BpmI CTGGAG 1 cut(s) 744
Bpu1102I GCTNAGC 1 cut(s) 347
BpuMI CCSGG 4 cut(s) 473, 539, 710, 711
Bsa29I ATCGAT 1 cut(s) 24
BsaJI CCNNGG 3 cut(s) 352, 367, 709
Bse1I ACTGG 2 cut(s) 709, 732
BseBI CCWGG 1 cut(s) 221
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 3 cut(s) 352, 367, 709
BseGI GGATG 1 cut(s) 746
BseMII CTCAG 1 cut(s) 361
BseNI ACTGG 2 cut(s) 709, 732
BsePI GCGCGC 1 cut(s) 254
BseRI GAGGAG 6 cut(s) 382, 409, 475, 541, 607, 712
BseXI GCAGC 7 cut(s) 310, 411, 543, 609, 648, 753, 781
Bsh1236I CGCG 1 cut(s) 256
BshFI GGCC 4 cut(s) 471, 603, 708, 714
BshVI ATCGAT 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 348
BsiHKCI CYCGRG 1 cut(s) 709
BsiSI CCGG 5 cut(s) 407, 473, 539, 710, 737
BsmI GAATGC 5 cut(s) 272, 512, 578, 644, 683
BsnI GGCC 4 cut(s) 471, 603, 708, 714
BsoBI CYCGRG 1 cut(s) 709
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 2 cut(s) 403, 826
Bsp1720I GCTNAGC 1 cut(s) 347
Bsp19I CCATGG 1 cut(s) 367
BspACI CCGC 1 cut(s) 247
BspANI GGCC 4 cut(s) 471, 603, 708, 714
BspCNI CTCAG 1 cut(s) 360
BspDI ATCGAT 1 cut(s) 24
BspFNI CGCG 1 cut(s) 256
BspMAI CTGCAG 2 cut(s) 328, 771
BspPI GGATC 1 cut(s) 398
BsrI ACTGG 2 cut(s) 709, 732
BssECI CCNNGG 3 cut(s) 352, 367, 709
BssHII GCGCGC 1 cut(s) 254
BssMI GATC 2 cut(s) 403, 826
BssT1I CCWWGG 1 cut(s) 367
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 3 cut(s) 301, 316, 339
Bst6I CTCTTC 4 cut(s) 120, 125, 730, 824
BstAPI GCANNNNNTGC 1 cut(s) 661
BstC8I GCNNGC 7 cut(s) 256, 272, 510, 576, 642, 681, 774
BstDEI CTNAG 1 cut(s) 347
BstDSI CCRYGG 1 cut(s) 367
BstF5I GGATG 1 cut(s) 746
BstFNI CGCG 1 cut(s) 256
BstHHI GCGC 2 cut(s) 256, 258
BstKTI GATC 2 cut(s) 406, 829
BstMBI GATC 2 cut(s) 403, 826
BstMWI GCNNNNNNNGC 2 cut(s) 255, 661
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 5 cut(s) 219, 471, 537, 708, 709
BstSFI CTRYAG 2 cut(s) 324, 767
BstUI CGCG 1 cut(s) 256
BstV1I GCAGC 7 cut(s) 310, 411, 543, 609, 648, 753, 781
BstXI CCANNNNNNTGG 1 cut(s) 227
Bsu15I ATCGAT 1 cut(s) 24
BsuRI GGCC 4 cut(s) 471, 603, 708, 714
BsuTUI ATCGAT 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 367
BtsCI GGATG 1 cut(s) 746
BtsIMutI CAGTG 1 cut(s) 776
Cac8I GCNNGC 7 cut(s) 256, 272, 510, 576, 642, 681, 774
CaiI CAGNNNCTG 1 cut(s) 661
CfoI GCGC 2 cut(s) 256, 258
Cfr13I GGNCC 5 cut(s) 470, 602, 707, 712, 869
Cfr9I CCCGGG 1 cut(s) 709
ClaI ATCGAT 1 cut(s) 24
CseI GACGC 1 cut(s) 667
CsiI ACCWGGT 1 cut(s) 219
Csp6I GTAC 3 cut(s) 77, 142, 295
CviAII CATG 1 cut(s) 368
CviQI GTAC 3 cut(s) 77, 142, 295
DdeI CTNAG 1 cut(s) 347
DpnI GATC 2 cut(s) 405, 828
DpnII GATC 2 cut(s) 403, 826
DraI TTTAAA 1 cut(s) 334
Eam1104I CTCTTC 4 cut(s) 120, 125, 730, 824
EarI CTCTTC 4 cut(s) 120, 125, 730, 824
Ecl136II GAGCTC 1 cut(s) 346
Eco130I CCWWGG 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 348
Eco47I GGWCC 1 cut(s) 869
Eco53kI GAGCTC 1 cut(s) 346
Eco88I CYCGRG 1 cut(s) 709
EcoICRI GAGCTC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 367
EcoT38I GRGCYC 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 367
FaeI CATG 1 cut(s) 371
FaiI YATR 6 cut(s) 75, 252, 342, 369, 805, 807
FatI CATG 1 cut(s) 367
FbaI TGATCA 1 cut(s) 826
Fnu4HI GCNGC 7 cut(s) 324, 425, 557, 623, 662, 767, 770
FokI GGATG 1 cut(s) 733
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 7 cut(s) 324, 425, 557, 623, 662, 767, 770
GlaI GCGC 2 cut(s) 255, 257
GluI GCNGC 7 cut(s) 324, 425, 557, 623, 662, 767, 770
GsuI CTGGAG 1 cut(s) 744
HaeIII GGCC 4 cut(s) 471, 603, 708, 714
HapII CCGG 5 cut(s) 407, 473, 539, 710, 737
HgaI GACGC 1 cut(s) 667
HhaI GCGC 2 cut(s) 256, 258
Hin1II CATG 1 cut(s) 371
Hin6I GCGC 2 cut(s) 254, 256
HinP1I GCGC 2 cut(s) 254, 256
HinfI GANTC 4 cut(s) 185, 231, 781, 888
HpaII CCGG 5 cut(s) 407, 473, 539, 710, 737
HphI GGTGA 2 cut(s) 110, 379
Hpy166II GTNNAC 1 cut(s) 297
Hpy188I TCNGA 4 cut(s) 165, 184, 634, 893
Hpy188III TCNNGA 4 cut(s) 122, 263, 761, 872
Hpy8I GTNNAC 1 cut(s) 297
Hpy99I CGWCG 1 cut(s) 887
HpyAV CCTTC 2 cut(s) 11, 869
HpyCH4III ACNGT 3 cut(s) 301, 316, 339
HpyCH4V TGCA 3 cut(s) 326, 746, 769
HpyF10VI GCNNNNNNNGC 2 cut(s) 255, 661
HpyF3I CTNAG 1 cut(s) 347
Hsp92II CATG 1 cut(s) 371
HspAI GCGC 2 cut(s) 254, 256
Ksp22I TGATCA 1 cut(s) 826
Kzo9I GATC 2 cut(s) 403, 826
Lsp1109I GCAGC 7 cut(s) 310, 411, 543, 609, 648, 753, 781
LweI GCATC 2 cut(s) 30, 755
MabI ACCWGGT 1 cut(s) 219
MaeIII GTNAC 2 cut(s) 362, 878
MalI GATC 2 cut(s) 405, 828
MboI GATC 2 cut(s) 403, 826
MboII GAAGA 4 cut(s) 137, 142, 717, 811
MfeI CAATTG 1 cut(s) 843
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 4 cut(s) 65, 172, 831, 843
MlyI GAGTC 1 cut(s) 179
MseI TTAA 3 cut(s) 11, 333, 530
MspI CCGG 5 cut(s) 407, 473, 539, 710, 737
MspR9I CCNGG 5 cut(s) 221, 473, 539, 710, 711
MunI CAATTG 1 cut(s) 843
Mva1269I GAATGC 5 cut(s) 272, 512, 578, 644, 683
MvaI CCWGG 1 cut(s) 221
MvnI CGCG 1 cut(s) 256
MwoI GCNNNNNNNGC 2 cut(s) 255, 661
NciI CCSGG 4 cut(s) 473, 539, 710, 711
NcoI CCATGG 1 cut(s) 367
NdeII GATC 2 cut(s) 403, 826
NlaIII CATG 1 cut(s) 371
NmeAIII GCCGAG 1 cut(s) 377
PauI GCGCGC 1 cut(s) 254
PctI GAATGC 5 cut(s) 272, 512, 578, 644, 683
PfeI GAWTC 2 cut(s) 231, 781
PflFI GACNNNGTC 1 cut(s) 887
PkrI GCNGC 7 cut(s) 325, 426, 558, 624, 663, 768, 771
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
Psp124BI GAGCTC 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspPI GGNCC 5 cut(s) 470, 602, 707, 712, 869
PstI CTGCAG 2 cut(s) 328, 771
PstNI CAGNNNCTG 1 cut(s) 661
PsyI GACNNNGTC 1 cut(s) 887
PteI GCGCGC 1 cut(s) 254
RsaI GTAC 3 cut(s) 78, 143, 296
RsaNI GTAC 3 cut(s) 77, 142, 295
SacI GAGCTC 1 cut(s) 348
SaqAI TTAA 3 cut(s) 11, 333, 530
SatI GCNGC 7 cut(s) 324, 425, 557, 623, 662, 767, 770
Sau3AI GATC 2 cut(s) 403, 826
Sau96I GGNCC 5 cut(s) 470, 602, 707, 712, 869
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 5 cut(s) 221, 473, 539, 710, 711
SduI GDGCHC 1 cut(s) 348
SetI ASST 8 cut(s) 141, 225, 296, 348, 392, 760, 768, 880
SexAI ACCWGGT 1 cut(s) 219
SfaNI GCATC 2 cut(s) 30, 755
SfcI CTRYAG 2 cut(s) 324, 767
SinI GGWCC 1 cut(s) 869
SmaI CCCGGG 1 cut(s) 711
SrfI GCCCGGGC 1 cut(s) 711
Sse9I AATT 4 cut(s) 65, 172, 831, 843
SsiI CCGC 1 cut(s) 247
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 5 cut(s) 219, 471, 537, 708, 709
StyI CCWWGG 1 cut(s) 367
TaaI ACNGT 3 cut(s) 301, 316, 339
TaqI TCGA 4 cut(s) 24, 262, 303, 822
TasI AATT 4 cut(s) 65, 172, 831, 843
TatI WGTACW 1 cut(s) 141
TfiI GAWTC 2 cut(s) 231, 781
Tru1I TTAA 3 cut(s) 11, 333, 530
Tru9I TTAA 3 cut(s) 11, 333, 530
TscAI CASTG 1 cut(s) 783
TseI GCWGC 7 cut(s) 323, 424, 556, 622, 661, 766, 769
TspDTI ATGAA 5 cut(s) 439, 505, 571, 637, 676
TspGWI ACGGA 1 cut(s) 29
TspMI CCCGGG 1 cut(s) 709
TspRI CASTG 1 cut(s) 783
Tth111I GACNNNGTC 1 cut(s) 887
VpaK11BI GGWCC 1 cut(s) 869
XapI RAATTY 1 cut(s) 65
XmaI CCCGGG 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.