Pre-rRNA-processing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G01160 |
| fragaria_vesca | FvH4_1g11200 FvH4_1g11200 FvH4_1g11200 FvH4_1g11200 FvH4_1g11200 |
| malus_domestica | MD02G1124600.v1.1 MD15G1238700.v1.1 |
| prunus_persica | Prupe.7G173800_v2.0.a1 |
| pyrus_communis | pycom02g09730 pycom15g21210 |
| rosa_chinensis | RchiOBHm_Chr2g0098611 |
| rosa_laevigata | RLG00000016812 |
| rosa_multiflora | Rmu_sc0002776.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00143850 |
| rosa_rugosa | Rorug02G0073700 |
| rosa_samantha | Rh2AG121300 Rh2BG124900 Rh2CG125900 Rh2DG127000 |
| rosa_wichuraiana | Rw0G004120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 988 |
| AccB1I | GGYRCC | 1 cut(s) | 988 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1306 |
| AccI | GTMKAC | 1 cut(s) | 1615 |
| AccII | CGCG | 2 cut(s) | 88, 198 |
| AciI | CCGC | 6 cut(s) | 86, 88, 136, 198, 238, 530 |
| AclWI | GGATC | 8 cut(s) | 50, 152, 1381, 1715, 1754, 1799, 1808, 1812 |
| AcoI | YGGCCR | 2 cut(s) | 423, 1297 |
| AcsI | RAATTY | 2 cut(s) | 702, 1097 |
| AcuI | CTGAAG | 1 cut(s) | 1206 |
| AdeI | CACNNNGTG | 1 cut(s) | 971 |
| AfaI | GTAC | 8 cut(s) | 245, 284, 489, 827, 990, 1238, 1911, 2061 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 78, 142, 635, 1306, 1885 |
| AflII | CTTAAG | 1 cut(s) | 1427 |
| AjiI | CACGTC | 2 cut(s) | 421, 1412 |
| AjnI | CCWGG | 3 cut(s) | 1072, 1299, 2014 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 359, 391, 1124, 1156 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 74, 106 |
| AluBI | AGCT | 5 cut(s) | 781, 1114, 1184, 1426, 1624 |
| AluI | AGCT | 5 cut(s) | 781, 1114, 1184, 1426, 1624 |
| Alw21I | GWGCWC | 1 cut(s) | 1030 |
| Alw26I | GTCTC | 2 cut(s) | 434, 1554 |
| AlwI | GGATC | 8 cut(s) | 50, 152, 1381, 1715, 1754, 1799, 1808, 1812 |
| Ama87I | CYCGRG | 2 cut(s) | 1551, 1916 |
| AoxI | GGCC | 6 cut(s) | 114, 144, 216, 423, 1170, 1297 |
| ApeKI | GCWGC | 3 cut(s) | 1033, 1579, 1853 |
| ApoI | RAATTY | 2 cut(s) | 702, 1097 |
| AseI | ATTAAT | 2 cut(s) | 786, 1952 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 702 |
| Asp718I | GGTACC | 1 cut(s) | 988 |
| AspLEI | GCGC | 2 cut(s) | 198, 1350 |
| AspS9I | GGNCC | 5 cut(s) | 82, 121, 710, 1083, 1922 |
| AsuC2I | CCSGG | 1 cut(s) | 225 |
| AsuHPI | GGTGA | 5 cut(s) | 43, 145, 382, 1298, 1774 |
| AvaI | CYCGRG | 2 cut(s) | 1551, 1916 |
| AvaII | GGWCC | 5 cut(s) | 82, 121, 710, 1083, 1922 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 972, 1005 |
| BalI | TGGCCA | 1 cut(s) | 1299 |
| BamHI | GGATCC | 1 cut(s) | 1804 |
| BanI | GGYRCC | 1 cut(s) | 988 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1893, 1925 |
| BbsI | GAAGAC | 1 cut(s) | 324 |
| Bbv12I | GWGCWC | 1 cut(s) | 1030 |
| BbvCI | CCTCAGC | 1 cut(s) | 821 |
| BbvI | GCAGC | 3 cut(s) | 1045, 1591, 1865 |
| BccI | CCATC | 5 cut(s) | 673, 884, 1256, 1289, 1930 |
| BciT130I | CCWGG | 3 cut(s) | 1074, 1301, 2016 |
| BciVI | GTATCC | 2 cut(s) | 672, 1667 |
| BclI | TGATCA | 2 cut(s) | 1108, 1477 |
| BcnI | CCSGG | 1 cut(s) | 225 |
| BcoDI | GTCTC | 2 cut(s) | 434, 1554 |
| BfaI | CTAG | 1 cut(s) | 1023 |
| BfmI | CTRYAG | 2 cut(s) | 837, 1031 |
| BfrI | CTTAAG | 1 cut(s) | 1427 |
| BfuI | GTATCC | 2 cut(s) | 672, 1667 |
| BisI | GCNGC | 5 cut(s) | 199, 239, 1034, 1580, 1854 |
| BlsI | GCNGC | 5 cut(s) | 200, 240, 1035, 1581, 1855 |
| BmcAI | AGTACT | 1 cut(s) | 245 |
| Bme1390I | CCNGG | 4 cut(s) | 225, 1074, 1301, 2016 |
| Bme18I | GGWCC | 5 cut(s) | 82, 121, 710, 1083, 1922 |
| BmeT110I | CYCGRG | 2 cut(s) | 1551, 1916 |
| BmgBI | CACGTC | 2 cut(s) | 421, 1412 |
| BmgT120I | GGNCC | 5 cut(s) | 82, 121, 710, 1083, 1922 |
| BmiI | GGNNCC | 7 cut(s) | 83, 84, 183, 990, 1806, 1923, 1924 |
| BmrFI | CCNGG | 4 cut(s) | 225, 1074, 1301, 2016 |
| BmrI | ACTGGG | 1 cut(s) | 88 |
| BmsI | GCATC | 3 cut(s) | 225, 970, 1381 |
| BmuI | ACTGGG | 1 cut(s) | 88 |
| BpiI | GAAGAC | 1 cut(s) | 324 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1910, 1942 |
| BpmI | CTGGAG | 2 cut(s) | 512, 1278 |
| Bpu10I | CCTNAGC | 1 cut(s) | 821 |
| BpuEI | CTTGAG | 1 cut(s) | 1646 |
| BpuMI | CCSGG | 1 cut(s) | 225 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1395, 1476 |
| BsaJI | CCNNGG | 7 cut(s) | 86, 117, 223, 1073, 1173, 1917, 2014 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 266, 296 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 78, 142, 635, 1306, 1885 |
| Bse118I | RCCGGY | 1 cut(s) | 816 |
| Bse1I | ACTGG | 6 cut(s) | 83, 495, 1128, 1252, 1330, 2066 |
| Bse3DI | GCAATG | 1 cut(s) | 516 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1395, 1476 |
| BseBI | CCWGG | 3 cut(s) | 1074, 1301, 2016 |
| BseDI | CCNNGG | 7 cut(s) | 86, 117, 223, 1073, 1173, 1917, 2014 |
| BseJI | GATNNNNATC | 2 cut(s) | 1395, 1476 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 78, 142, 635, 1306, 1885 |
| BseMI | GCAATG | 1 cut(s) | 516 |
| BseMII | CTCAG | 5 cut(s) | 812, 867, 975, 1414, 2070 |
| BseNI | ACTGG | 6 cut(s) | 83, 495, 1128, 1252, 1330, 2066 |
| BseXI | GCAGC | 3 cut(s) | 1045, 1591, 1865 |
| Bsh1236I | CGCG | 2 cut(s) | 88, 198 |
| Bsh1285I | CGRYCG | 1 cut(s) | 136 |
| BshFI | GGCC | 6 cut(s) | 116, 146, 218, 425, 1172, 1299 |
| BshNI | GGYRCC | 1 cut(s) | 988 |
| BsiEI | CGRYCG | 1 cut(s) | 136 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1030 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1551, 1916 |
| BsiSI | CCGG | 4 cut(s) | 225, 426, 817, 1846 |
| BslFI | GGGAC | 3 cut(s) | 95, 466, 1908 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 78, 142, 635, 1306, 1885 |
| BsmAI | GTCTC | 2 cut(s) | 434, 1554 |
| BsmBI | CGTCTC | 1 cut(s) | 434 |
| BsmFI | GGGAC | 3 cut(s) | 95, 466, 1908 |
| BsmI | GAATGC | 1 cut(s) | 1350 |
| BsnI | GGCC | 6 cut(s) | 116, 146, 218, 425, 1172, 1299 |
| BsoBI | CYCGRG | 2 cut(s) | 1551, 1916 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1030 |
| BspACI | CCGC | 6 cut(s) | 86, 88, 136, 198, 238, 530 |
| BspANI | GGCC | 6 cut(s) | 116, 146, 218, 425, 1172, 1299 |
| BspCNI | CTCAG | 5 cut(s) | 813, 866, 976, 1413, 2069 |
| BspFNI | CGCG | 2 cut(s) | 88, 198 |
| BspLI | GGNNCC | 7 cut(s) | 83, 84, 183, 990, 1806, 1923, 1924 |
| BspMAI | CTGCAG | 1 cut(s) | 1035 |
| BspPI | GGATC | 8 cut(s) | 50, 152, 1381, 1715, 1754, 1799, 1808, 1812 |
| BspQI | GCTCTTC | 2 cut(s) | 771, 1488 |
| BspT107I | GGYRCC | 1 cut(s) | 988 |
| BspTI | CTTAAG | 1 cut(s) | 1427 |
| BsrDI | GCAATG | 1 cut(s) | 516 |
| BsrFI | RCCGGY | 1 cut(s) | 816 |
| BsrI | ACTGG | 6 cut(s) | 83, 495, 1128, 1252, 1330, 2066 |
| BssAI | RCCGGY | 1 cut(s) | 816 |
| BssECI | CCNNGG | 7 cut(s) | 86, 117, 223, 1073, 1173, 1917, 2014 |
| BssT1I | CCWWGG | 1 cut(s) | 117 |
| Bst2UI | CCWGG | 3 cut(s) | 1074, 1301, 2016 |
| Bst4CI | ACNGT | 3 cut(s) | 500, 1241, 1384 |
| Bst6I | CTCTTC | 6 cut(s) | 330, 357, 771, 1284, 1488, 1878 |
| BstAFI | CTTAAG | 1 cut(s) | 1427 |
| BstC8I | GCNNGC | 7 cut(s) | 203, 507, 558, 801, 818, 1346, 1851 |
| BstDEI | CTNAG | 5 cut(s) | 821, 853, 984, 1400, 2056 |
| BstDSI | CCRYGG | 1 cut(s) | 86 |
| BstFNI | CGCG | 2 cut(s) | 88, 198 |
| BstHHI | GCGC | 2 cut(s) | 198, 1350 |
| BstMAI | GTCTC | 2 cut(s) | 434, 1554 |
| BstMCI | CGRYCG | 1 cut(s) | 136 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 202, 511 |
| BstNI | CCWGG | 3 cut(s) | 1074, 1301, 2016 |
| BstSCI | CCNGG | 4 cut(s) | 223, 1072, 1299, 2014 |
| BstSFI | CTRYAG | 2 cut(s) | 837, 1031 |
| BstUI | CGCG | 2 cut(s) | 88, 198 |
| BstV1I | GCAGC | 3 cut(s) | 1045, 1591, 1865 |
| BstV2I | GAAGAC | 1 cut(s) | 324 |
| BstX2I | RGATCY | 4 cut(s) | 1720, 1759, 1804, 1813 |
| BstYI | RGATCY | 4 cut(s) | 1720, 1759, 1804, 1813 |
| BsuI | GTATCC | 2 cut(s) | 672, 1667 |
| BsuRI | GGCC | 6 cut(s) | 116, 146, 218, 425, 1172, 1299 |
| BtgI | CCRYGG | 1 cut(s) | 86 |
| BtrI | CACGTC | 2 cut(s) | 421, 1412 |
| BtsI | GCAGTG | 2 cut(s) | 1028, 1101 |
| BtsIMutI | CAGTG | 3 cut(s) | 76, 1028, 1101 |
| Cac8I | GCNNGC | 7 cut(s) | 203, 507, 558, 801, 818, 1346, 1851 |
| CfoI | GCGC | 2 cut(s) | 198, 1350 |
| Cfr10I | RCCGGY | 1 cut(s) | 816 |
| Cfr13I | GGNCC | 5 cut(s) | 82, 121, 710, 1083, 1922 |
| Cfr42I | CCGCGG | 1 cut(s) | 89 |
| Csp6I | GTAC | 8 cut(s) | 244, 283, 488, 826, 989, 1237, 1910, 2060 |
| CviAII | CATG | 4 cut(s) | 148, 707, 1056, 1619 |
| CviQI | GTAC | 8 cut(s) | 244, 283, 488, 826, 989, 1237, 1910, 2060 |
| DdeI | CTNAG | 5 cut(s) | 821, 853, 984, 1400, 2056 |
| DraIII | CACNNNGTG | 1 cut(s) | 971 |
| EaeI | YGGCCR | 2 cut(s) | 423, 1297 |
| Eam1104I | CTCTTC | 6 cut(s) | 330, 357, 771, 1284, 1488, 1878 |
| EarI | CTCTTC | 6 cut(s) | 330, 357, 771, 1284, 1488, 1878 |
| Eco130I | CCWWGG | 1 cut(s) | 117 |
| Eco47I | GGWCC | 5 cut(s) | 82, 121, 710, 1083, 1922 |
| Eco57I | CTGAAG | 1 cut(s) | 1206 |
| Eco88I | CYCGRG | 2 cut(s) | 1551, 1916 |
| EcoO109I | RGGNCCY | 3 cut(s) | 82, 1083, 1922 |
| EcoRII | CCWGG | 3 cut(s) | 1072, 1299, 2014 |
| EcoT14I | CCWWGG | 1 cut(s) | 117 |
| ErhI | CCWWGG | 1 cut(s) | 117 |
| Esp3I | CGTCTC | 1 cut(s) | 434 |
| FaeI | CATG | 4 cut(s) | 151, 710, 1059, 1622 |
| FaqI | GGGAC | 3 cut(s) | 95, 466, 1908 |
| FatI | CATG | 4 cut(s) | 147, 706, 1055, 1618 |
| FauI | CCCGC | 1 cut(s) | 93 |
| FbaI | TGATCA | 2 cut(s) | 1108, 1477 |
| FblI | GTMKAC | 1 cut(s) | 1615 |
| Fnu4HI | GCNGC | 5 cut(s) | 199, 239, 1034, 1580, 1854 |
| Fsp4HI | GCNGC | 5 cut(s) | 199, 239, 1034, 1580, 1854 |
| FspBI | CTAG | 1 cut(s) | 1023 |
| GlaI | GCGC | 2 cut(s) | 197, 1349 |
| GluI | GCNGC | 5 cut(s) | 199, 239, 1034, 1580, 1854 |
| GsuI | CTGGAG | 2 cut(s) | 512, 1278 |
| HaeIII | GGCC | 6 cut(s) | 116, 146, 218, 425, 1172, 1299 |
| HapII | CCGG | 4 cut(s) | 225, 426, 817, 1846 |
| HhaI | GCGC | 2 cut(s) | 198, 1350 |
| Hin1II | CATG | 4 cut(s) | 151, 710, 1059, 1622 |
| Hin6I | GCGC | 2 cut(s) | 196, 1348 |
| HinP1I | GCGC | 2 cut(s) | 196, 1348 |
| HincII | GTYRAC | 2 cut(s) | 568, 598 |
| HindII | GTYRAC | 2 cut(s) | 568, 598 |
| HindIII | AAGCTT | 1 cut(s) | 1424 |
| HpaI | GTTAAC | 1 cut(s) | 568 |
| HpaII | CCGG | 4 cut(s) | 225, 426, 817, 1846 |
| HphI | GGTGA | 5 cut(s) | 43, 145, 382, 1298, 1774 |
| Hpy166II | GTNNAC | 6 cut(s) | 76, 153, 568, 598, 1616, 1782 |
| Hpy188III | TCNNGA | 8 cut(s) | 124, 538, 923, 1257, 1355, 1481, 1724, 1802 |
| Hpy8I | GTNNAC | 6 cut(s) | 76, 153, 568, 598, 1616, 1782 |
| Hpy99I | CGWCG | 6 cut(s) | 134, 190, 448, 451, 767, 770 |
| HpyAV | CCTTC | 7 cut(s) | 208, 361, 535, 1002, 1074, 1357, 1533 |
| HpyCH4III | ACNGT | 3 cut(s) | 500, 1241, 1384 |
| HpyCH4IV | ACGT | 3 cut(s) | 420, 1411, 1687 |
| HpyCH4V | TGCA | 7 cut(s) | 514, 980, 1033, 1667, 1772, 1835, 2008 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 202, 511 |
| HpyF3I | CTNAG | 5 cut(s) | 821, 853, 984, 1400, 2056 |
| HpySE526I | ACGT | 3 cut(s) | 420, 1411, 1687 |
| Hsp92II | CATG | 4 cut(s) | 151, 710, 1059, 1622 |
| HspAI | GCGC | 2 cut(s) | 196, 1348 |
| KflI | GGGWCCC | 2 cut(s) | 82, 1922 |
| KpnI | GGTACC | 1 cut(s) | 992 |
| KroI | GCCGGC | 1 cut(s) | 816 |
| KroNI | GCCGGC | 1 cut(s) | 818 |
| Ksp22I | TGATCA | 2 cut(s) | 1108, 1477 |
| KspAI | GTTAAC | 1 cut(s) | 568 |
| KspI | CCGCGG | 1 cut(s) | 89 |
| LguI | GCTCTTC | 2 cut(s) | 771, 1488 |
| LmnI | GCTCC | 3 cut(s) | 106, 187, 2038 |
| Lsp1109I | GCAGC | 3 cut(s) | 1045, 1591, 1865 |
| LweI | GCATC | 3 cut(s) | 225, 970, 1381 |
| MaeI | CTAG | 1 cut(s) | 1023 |
| MaeII | ACGT | 3 cut(s) | 420, 1411, 1687 |
| MaeIII | GTNAC | 5 cut(s) | 758, 848, 1312, 1562, 1874 |
| MflI | RGATCY | 4 cut(s) | 1720, 1759, 1804, 1813 |
| MhlI | GDGCHC | 1 cut(s) | 1030 |
| MlsI | TGGCCA | 1 cut(s) | 1299 |
| MluNI | TGGCCA | 1 cut(s) | 1299 |
| MlyI | GAGTC | 2 cut(s) | 845, 1556 |
| MmeI | TCCRAC | 4 cut(s) | 168, 1832, 2068, 2075 |
| Mox20I | TGGCCA | 1 cut(s) | 1299 |
| MroNI | GCCGGC | 1 cut(s) | 816 |
| MroXI | GAANNNNTTC | 1 cut(s) | 702 |
| MscI | TGGCCA | 1 cut(s) | 1299 |
| Msp20I | TGGCCA | 1 cut(s) | 1299 |
| MspA1I | CMGCKG | 1 cut(s) | 88 |
| MspCI | CTTAAG | 1 cut(s) | 1427 |
| MspI | CCGG | 4 cut(s) | 225, 426, 817, 1846 |
| MspR9I | CCNGG | 4 cut(s) | 225, 1074, 1301, 2016 |
| Mva1269I | GAATGC | 1 cut(s) | 1350 |
| MvaI | CCWGG | 3 cut(s) | 1074, 1301, 2016 |
| MvnI | CGCG | 2 cut(s) | 88, 198 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 202, 511 |
| NaeI | GCCGGC | 1 cut(s) | 818 |
| NciI | CCSGG | 1 cut(s) | 225 |
| NgoMIV | GCCGGC | 1 cut(s) | 816 |
| NlaIII | CATG | 4 cut(s) | 151, 710, 1059, 1622 |
| NlaIV | GGNNCC | 7 cut(s) | 83, 84, 183, 990, 1806, 1923, 1924 |
| NmeAIII | GCCGAG | 1 cut(s) | 1198 |
| NmuCI | GTSAC | 4 cut(s) | 758, 848, 1312, 1874 |
| PciSI | GCTCTTC | 2 cut(s) | 771, 1488 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 327, 443 |
| PctI | GAATGC | 1 cut(s) | 1350 |
| PdiI | GCCGGC | 1 cut(s) | 818 |
| PdmI | GAANNNNTTC | 1 cut(s) | 702 |
| PfeI | GAWTC | 8 cut(s) | 63, 434, 678, 933, 944, 1448, 1472, 2044 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1306 |
| PkrI | GCNGC | 5 cut(s) | 200, 240, 1035, 1581, 1855 |
| PleI | GAGTC | 2 cut(s) | 845, 1555 |
| PpsI | GAGTC | 2 cut(s) | 845, 1555 |
| PpuMI | RGGWCCY | 3 cut(s) | 82, 1083, 1922 |
| PshBI | ATTAAT | 2 cut(s) | 786, 1952 |
| Psp5II | RGGWCCY | 3 cut(s) | 82, 1083, 1922 |
| Psp6I | CCWGG | 3 cut(s) | 1072, 1299, 2014 |
| PspGI | CCWGG | 3 cut(s) | 1072, 1299, 2014 |
| PspN4I | GGNNCC | 7 cut(s) | 83, 84, 183, 990, 1806, 1923, 1924 |
| PspPI | GGNCC | 5 cut(s) | 82, 121, 710, 1083, 1922 |
| PspPPI | RGGWCCY | 3 cut(s) | 82, 1083, 1922 |
| PstI | CTGCAG | 1 cut(s) | 1035 |
| PsuI | RGATCY | 4 cut(s) | 1720, 1759, 1804, 1813 |
| RsaI | GTAC | 8 cut(s) | 245, 284, 489, 827, 990, 1238, 1911, 2061 |
| RsaNI | GTAC | 8 cut(s) | 244, 283, 488, 826, 989, 1237, 1910, 2060 |
| SacII | CCGCGG | 1 cut(s) | 89 |
| SapI | GCTCTTC | 2 cut(s) | 771, 1488 |
| SatI | GCNGC | 5 cut(s) | 199, 239, 1034, 1580, 1854 |
| Sau96I | GGNCC | 5 cut(s) | 82, 121, 710, 1083, 1922 |
| ScaI | AGTACT | 1 cut(s) | 245 |
| SchI | GAGTC | 2 cut(s) | 845, 1556 |
| ScrFI | CCNGG | 4 cut(s) | 225, 1074, 1301, 2016 |
| SduI | GDGCHC | 1 cut(s) | 1030 |
| SfaNI | GCATC | 3 cut(s) | 225, 970, 1381 |
| SfcI | CTRYAG | 2 cut(s) | 837, 1031 |
| Sfr303I | CCGCGG | 1 cut(s) | 89 |
| SgrBI | CCGCGG | 1 cut(s) | 89 |
| SinI | GGWCC | 5 cut(s) | 82, 121, 710, 1083, 1922 |
| SmlI | CTYRAG | 2 cut(s) | 1427, 1625 |
| SmoI | CTYRAG | 2 cut(s) | 1427, 1625 |
| SsiI | CCGC | 6 cut(s) | 86, 88, 136, 198, 238, 530 |
| SspMI | CTAG | 1 cut(s) | 1023 |
| StyD4I | CCNGG | 4 cut(s) | 223, 1072, 1299, 2014 |
| StyI | CCWWGG | 1 cut(s) | 117 |
| TaaI | ACNGT | 3 cut(s) | 500, 1241, 1384 |
| TaiI | ACGT | 3 cut(s) | 423, 1414, 1690 |
| TaqI | TCGA | 4 cut(s) | 8, 129, 537, 681 |
| TatI | WGTACW | 3 cut(s) | 243, 1909, 2059 |
| TauI | GCSGC | 2 cut(s) | 201, 241 |
| TfiI | GAWTC | 8 cut(s) | 63, 434, 678, 933, 944, 1448, 1472, 2044 |
| TscAI | CASTG | 3 cut(s) | 83, 1035, 1108 |
| TseFI | GTSAC | 4 cut(s) | 758, 848, 1312, 1874 |
| TseI | GCWGC | 3 cut(s) | 1033, 1579, 1853 |
| Tsp45I | GTSAC | 4 cut(s) | 758, 848, 1312, 1874 |
| TspGWI | ACGGA | 5 cut(s) | 48, 61, 174, 1516, 1607 |
| TspRI | CASTG | 3 cut(s) | 83, 1035, 1108 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1306 |
| Vha464I | CTTAAG | 1 cut(s) | 1427 |
| VpaK11BI | GGWCC | 5 cut(s) | 82, 121, 710, 1083, 1922 |
| VspI | ATTAAT | 2 cut(s) | 786, 1952 |
| XapI | RAATTY | 2 cut(s) | 702, 1097 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1259 |
| XmiI | GTMKAC | 1 cut(s) | 1615 |
| XmnI | GAANNNNTTC | 1 cut(s) | 702 |
| XspI | CTAG | 1 cut(s) | 1023 |
| ZrmI | AGTACT | 1 cut(s) | 245 |