Pre-rRNA-processing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G01160 |
| fragaria_vesca | FvH4_1g11200 FvH4_1g11200 FvH4_1g11200 FvH4_1g11200 FvH4_1g11200 |
| malus_domestica | MD02G1124600.v1.1 MD15G1238700.v1.1 |
| prunus_persica | Prupe.7G173800_v2.0.a1 |
| pyrus_communis | pycom02g09730 pycom15g21210 |
| rosa_chinensis | RchiOBHm_Chr2g0098611 |
| rosa_laevigata | RLG00000016812 |
| rosa_multiflora | Rmu_sc0002776.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00143850 |
| rosa_rugosa | Rorug02G0073700 |
| rosa_samantha | Rh2AG121300 Rh2BG124900 Rh2CG125900 Rh2DG127000 |
| rosa_wichuraiana | Rw0G004120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1003, 1861 |
| Acc65I | GGTACC | 1 cut(s) | 991 |
| AccB1I | GGYRCC | 2 cut(s) | 196, 991 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1330 |
| AccII | CGCG | 3 cut(s) | 151, 503, 1437 |
| AciI | CCGC | 9 cut(s) | 151, 200, 250, 305, 390, 518, 802, 1838, 1857 |
| AclI | AACGTT | 1 cut(s) | 114 |
| AclWI | GGATC | 7 cut(s) | 65, 1405, 1579, 1775, 1820, 1829, 1833 |
| AcsI | RAATTY | 2 cut(s) | 1100, 2026 |
| AcuI | CTGAAG | 3 cut(s) | 1154, 1533, 1647 |
| AcyI | GRCGYC | 2 cut(s) | 197, 762 |
| AdeI | CACNNNGTG | 1 cut(s) | 974 |
| AfaI | GTAC | 3 cut(s) | 257, 993, 1235 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 75, 93, 635, 1095, 1330, 2000, 2080 |
| AflIII | ACRYGT | 1 cut(s) | 1230 |
| AgsI | TTSAA | 5 cut(s) | 848, 908, 1093, 1705, 1846 |
| AjiI | CACGTC | 1 cut(s) | 412 |
| AjnI | CCWGG | 3 cut(s) | 505, 1075, 1323 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1127, 1159 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 89, 121 |
| Alw21I | GWGCWC | 3 cut(s) | 93, 387, 1647 |
| Alw26I | GTCTC | 5 cut(s) | 425, 539, 1221, 1299, 1876 |
| Alw44I | GTGCAC | 1 cut(s) | 89 |
| AlwI | GGATC | 7 cut(s) | 65, 1405, 1579, 1775, 1820, 1829, 1833 |
| Ama87I | CYCGRG | 2 cut(s) | 230, 1646 |
| AoxI | GGCC | 3 cut(s) | 321, 718, 1685 |
| ApaLI | GTGCAC | 1 cut(s) | 89 |
| ApeKI | GCWGC | 3 cut(s) | 247, 1190, 1511 |
| ApoI | RAATTY | 2 cut(s) | 1100, 2026 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 137, 169 |
| AscI | GGCGCGCC | 1 cut(s) | 501 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 702 |
| Asp718I | GGTACC | 1 cut(s) | 991 |
| AspA2I | CCTAGG | 1 cut(s) | 101 |
| AspLEI | GCGC | 4 cut(s) | 199, 503, 505, 1374 |
| AspS9I | GGNCC | 5 cut(s) | 97, 710, 1520, 1685, 2071 |
| AsuHPI | GGTGA | 3 cut(s) | 1322, 1795, 1929 |
| AsuII | TTCGAA | 1 cut(s) | 1776 |
| AvaI | CYCGRG | 2 cut(s) | 230, 1646 |
| AvaII | GGWCC | 4 cut(s) | 97, 710, 1520, 2071 |
| AvrII | CCTAGG | 1 cut(s) | 101 |
| AxyI | CCTNAGG | 1 cut(s) | 1689 |
| BaeGI | GKGCMC | 1 cut(s) | 93 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 975, 1008 |
| BamHI | GGATCC | 1 cut(s) | 1825 |
| BanI | GGYRCC | 2 cut(s) | 196, 991 |
| BanII | GRGCYC | 2 cut(s) | 387, 1647 |
| BauI | CACGAG | 1 cut(s) | 1505 |
| BbsI | GAAGAC | 2 cut(s) | 315, 1320 |
| Bbv12I | GWGCWC | 3 cut(s) | 93, 387, 1647 |
| BbvI | GCAGC | 3 cut(s) | 234, 1177, 1523 |
| BccI | CCATC | 6 cut(s) | 259, 458, 887, 946, 1511, 1942 |
| BceAI | ACGGC | 1 cut(s) | 514 |
| BciT130I | CCWGG | 3 cut(s) | 507, 1077, 1325 |
| BciVI | GTATCC | 1 cut(s) | 436 |
| BclI | TGATCA | 2 cut(s) | 1111, 1501 |
| BcoDI | GTCTC | 5 cut(s) | 425, 539, 1221, 1299, 1876 |
| BfaI | CTAG | 3 cut(s) | 102, 1379, 1745 |
| BfmI | CTRYAG | 2 cut(s) | 259, 1191 |
| BfoI | RGCGCY | 1 cut(s) | 200 |
| BfuAI | ACCTGC | 2 cut(s) | 1003, 1861 |
| BfuI | GTATCC | 1 cut(s) | 436 |
| BisI | GCNGC | 6 cut(s) | 200, 248, 251, 1191, 1512, 1857 |
| BlnI | CCTAGG | 1 cut(s) | 101 |
| BlsI | GCNGC | 6 cut(s) | 201, 249, 252, 1192, 1513, 1858 |
| BmcAI | AGTACT | 1 cut(s) | 257 |
| Bme1390I | CCNGG | 3 cut(s) | 507, 1077, 1325 |
| Bme18I | GGWCC | 4 cut(s) | 97, 710, 1520, 2071 |
| BmeT110I | CYCGRG | 2 cut(s) | 230, 1646 |
| BmgBI | CACGTC | 1 cut(s) | 412 |
| BmgT120I | GGNCC | 5 cut(s) | 97, 710, 1520, 1685, 2071 |
| BmiI | GGNNCC | 7 cut(s) | 98, 99, 107, 198, 993, 1827, 2073 |
| BmrFI | CCNGG | 3 cut(s) | 507, 1077, 1325 |
| BmrI | ACTGGG | 1 cut(s) | 103 |
| BmsI | GCATC | 5 cut(s) | 1177, 1282, 1383, 1669, 1998 |
| BmuI | ACTGGG | 1 cut(s) | 103 |
| BpiI | GAAGAC | 2 cut(s) | 315, 1320 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 131, 163, 227, 259 |
| BpmI | CTGGAG | 1 cut(s) | 665 |
| Bpu10I | CCTNAGC | 1 cut(s) | 824 |
| Bpu14I | TTCGAA | 1 cut(s) | 1776 |
| BpuEI | CTTGAG | 2 cut(s) | 1011, 1560 |
| Bsa29I | ATCGAT | 1 cut(s) | 1973 |
| BsaHI | GRCGYC | 2 cut(s) | 197, 762 |
| BsaJI | CCNNGG | 5 cut(s) | 42, 74, 101, 1719, 1784 |
| BsaWI | WCCGGW | 2 cut(s) | 159, 529 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 75, 93, 635, 1095, 1330, 2000, 2080 |
| Bse1I | ACTGG | 2 cut(s) | 98, 1354 |
| Bse21I | CCTNAGG | 1 cut(s) | 1689 |
| BseBI | CCWGG | 3 cut(s) | 507, 1077, 1325 |
| BseCI | ATCGAT | 1 cut(s) | 1973 |
| BseDI | CCNNGG | 5 cut(s) | 42, 74, 101, 1719, 1784 |
| BseGI | GGATG | 9 cut(s) | 168, 270, 409, 939, 1069, 1075, 1374, 1489, 2086 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 75, 93, 635, 1095, 1330, 2000, 2080 |
| BseMII | CTCAG | 4 cut(s) | 660, 806, 1438, 1871 |
| BseNI | ACTGG | 2 cut(s) | 98, 1354 |
| BsePI | GCGCGC | 1 cut(s) | 501 |
| BseSI | GKGCMC | 1 cut(s) | 93 |
| BseXI | GCAGC | 3 cut(s) | 234, 1177, 1523 |
| BseYI | CCCAGC | 1 cut(s) | 1989 |
| Bsh1236I | CGCG | 3 cut(s) | 151, 503, 1437 |
| Bsh1285I | CGRYCG | 1 cut(s) | 160 |
| BshFI | GGCC | 3 cut(s) | 323, 720, 1687 |
| BshNI | GGYRCC | 2 cut(s) | 196, 991 |
| BshVI | ATCGAT | 1 cut(s) | 1973 |
| BsiEI | CGRYCG | 1 cut(s) | 160 |
| BsiHKAI | GWGCWC | 3 cut(s) | 93, 387, 1647 |
| BsiHKCI | CYCGRG | 2 cut(s) | 230, 1646 |
| BsiSI | CCGG | 3 cut(s) | 160, 530, 2090 |
| BslFI | GGGAC | 1 cut(s) | 110 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 75, 93, 635, 1095, 1330, 2000, 2080 |
| BsmAI | GTCTC | 5 cut(s) | 425, 539, 1221, 1299, 1876 |
| BsmBI | CGTCTC | 2 cut(s) | 425, 1299 |
| BsmFI | GGGAC | 1 cut(s) | 110 |
| BsnI | GGCC | 3 cut(s) | 323, 720, 1687 |
| BsoBI | CYCGRG | 2 cut(s) | 230, 1646 |
| Bsp119I | TTCGAA | 1 cut(s) | 1776 |
| Bsp1286I | GDGCHC | 3 cut(s) | 93, 387, 1647 |
| BspACI | CCGC | 9 cut(s) | 151, 200, 250, 305, 390, 518, 802, 1838, 1857 |
| BspANI | GGCC | 3 cut(s) | 323, 720, 1687 |
| BspCNI | CTCAG | 4 cut(s) | 661, 805, 1437, 1872 |
| BspDI | ATCGAT | 1 cut(s) | 1973 |
| BspFNI | CGCG | 3 cut(s) | 151, 503, 1437 |
| BspLI | GGNNCC | 7 cut(s) | 98, 99, 107, 198, 993, 1827, 2073 |
| BspMAI | CTGCAG | 1 cut(s) | 1195 |
| BspMI | ACCTGC | 2 cut(s) | 1003, 1861 |
| BspPI | GGATC | 7 cut(s) | 65, 1405, 1579, 1775, 1820, 1829, 1833 |
| BspQI | GCTCTTC | 1 cut(s) | 1536 |
| BspT104I | TTCGAA | 1 cut(s) | 1776 |
| BspT107I | GGYRCC | 2 cut(s) | 196, 991 |
| BsrI | ACTGG | 2 cut(s) | 98, 1354 |
| BssECI | CCNNGG | 5 cut(s) | 42, 74, 101, 1719, 1784 |
| BssHII | GCGCGC | 1 cut(s) | 501 |
| BssNI | GRCGYC | 2 cut(s) | 197, 762 |
| BssSI | CACGAG | 1 cut(s) | 1505 |
| BssT1I | CCWWGG | 3 cut(s) | 42, 101, 1719 |
| Bst2BI | CACGAG | 1 cut(s) | 1505 |
| Bst2UI | CCWGG | 3 cut(s) | 507, 1077, 1325 |
| Bst4CI | ACNGT | 8 cut(s) | 658, 1238, 1310, 1408, 1499, 1788, 1887, 1941 |
| Bst6I | CTCTTC | 5 cut(s) | 345, 357, 1536, 1743, 1805 |
| BstACI | GRCGYC | 2 cut(s) | 197, 762 |
| BstBI | TTCGAA | 1 cut(s) | 1776 |
| BstC8I | GCNNGC | 6 cut(s) | 218, 503, 804, 821, 1000, 1633 |
| BstDEI | CTNAG | 7 cut(s) | 669, 792, 824, 1354, 1424, 1689, 1880 |
| BstDSI | CCRYGG | 1 cut(s) | 1784 |
| BstF5I | GGATG | 9 cut(s) | 168, 270, 409, 939, 1069, 1075, 1374, 1489, 2086 |
| BstFNI | CGCG | 3 cut(s) | 151, 503, 1437 |
| BstH2I | RGCGCY | 1 cut(s) | 200 |
| BstHHI | GCGC | 4 cut(s) | 199, 503, 505, 1374 |
| BstMAI | GTCTC | 5 cut(s) | 425, 539, 1221, 1299, 1876 |
| BstMCI | CGRYCG | 1 cut(s) | 160 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 208, 217, 226, 1862, 2090 |
| BstNI | CCWGG | 3 cut(s) | 507, 1077, 1325 |
| BstNSI | RCATGY | 2 cut(s) | 587, 1234 |
| BstSCI | CCNGG | 3 cut(s) | 505, 1075, 1323 |
| BstSFI | CTRYAG | 2 cut(s) | 259, 1191 |
| BstSLI | GKGCMC | 1 cut(s) | 93 |
| BstUI | CGCG | 3 cut(s) | 151, 503, 1437 |
| BstV1I | GCAGC | 3 cut(s) | 234, 1177, 1523 |
| BstV2I | GAAGAC | 2 cut(s) | 315, 1320 |
| BstX2I | RGATCY | 4 cut(s) | 1571, 1780, 1825, 1834 |
| BstYI | RGATCY | 4 cut(s) | 1571, 1780, 1825, 1834 |
| Bsu15I | ATCGAT | 1 cut(s) | 1973 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1689 |
| BsuI | GTATCC | 1 cut(s) | 436 |
| BsuRI | GGCC | 3 cut(s) | 323, 720, 1687 |
| BsuTUI | ATCGAT | 1 cut(s) | 1973 |
| BtgI | CCRYGG | 1 cut(s) | 1784 |
| BtgZI | GCGATG | 1 cut(s) | 49 |
| BtrI | CACGTC | 1 cut(s) | 412 |
| BtsCI | GGATG | 9 cut(s) | 168, 270, 409, 939, 1069, 1075, 1374, 1489, 2086 |
| BtsI | GCAGTG | 1 cut(s) | 615 |
| BtsIMutI | CAGTG | 5 cut(s) | 91, 615, 1104, 1504, 1877 |
| BveI | ACCTGC | 2 cut(s) | 1003, 1861 |
| Cac8I | GCNNGC | 6 cut(s) | 218, 503, 804, 821, 1000, 1633 |
| CfoI | GCGC | 4 cut(s) | 199, 503, 505, 1374 |
| Cfr13I | GGNCC | 5 cut(s) | 97, 710, 1520, 1685, 2071 |
| ClaI | ATCGAT | 1 cut(s) | 1973 |
| CseI | GACGC | 4 cut(s) | 770, 1089, 1284, 1443 |
| Csp6I | GTAC | 3 cut(s) | 256, 992, 1234 |
| CviAII | CATG | 2 cut(s) | 584, 1231 |
| CviQI | GTAC | 3 cut(s) | 256, 992, 1234 |
| DdeI | CTNAG | 7 cut(s) | 669, 792, 824, 1354, 1424, 1689, 1880 |
| DinI | GGCGCC | 1 cut(s) | 198 |
| DraI | TTTAAA | 1 cut(s) | 961 |
| DraIII | CACNNNGTG | 1 cut(s) | 974 |
| Eam1104I | CTCTTC | 5 cut(s) | 345, 357, 1536, 1743, 1805 |
| EarI | CTCTTC | 5 cut(s) | 345, 357, 1536, 1743, 1805 |
| EciI | GGCGGA | 2 cut(s) | 405, 533 |
| Ecl136II | GAGCTC | 2 cut(s) | 385, 1645 |
| Eco130I | CCWWGG | 3 cut(s) | 42, 101, 1719 |
| Eco24I | GRGCYC | 2 cut(s) | 387, 1647 |
| Eco47I | GGWCC | 4 cut(s) | 97, 710, 1520, 2071 |
| Eco53kI | GAGCTC | 2 cut(s) | 385, 1645 |
| Eco57I | CTGAAG | 3 cut(s) | 1154, 1533, 1647 |
| Eco81I | CCTNAGG | 1 cut(s) | 1689 |
| Eco88I | CYCGRG | 2 cut(s) | 230, 1646 |
| EcoICRI | GAGCTC | 2 cut(s) | 385, 1645 |
| EcoO109I | RGGNCCY | 3 cut(s) | 97, 1685, 2071 |
| EcoRII | CCWGG | 3 cut(s) | 505, 1075, 1323 |
| EcoT14I | CCWWGG | 3 cut(s) | 42, 101, 1719 |
| EcoT38I | GRGCYC | 2 cut(s) | 387, 1647 |
| EgeI | GGCGCC | 1 cut(s) | 198 |
| EheI | GGCGCC | 1 cut(s) | 198 |
| ErhI | CCWWGG | 3 cut(s) | 42, 101, 1719 |
| Esp3I | CGTCTC | 2 cut(s) | 425, 1299 |
| FaeI | CATG | 2 cut(s) | 587, 1234 |
| FaqI | GGGAC | 1 cut(s) | 110 |
| FatI | CATG | 2 cut(s) | 583, 1230 |
| FauI | CCCGC | 1 cut(s) | 795 |
| FbaI | TGATCA | 2 cut(s) | 1111, 1501 |
| Fnu4HI | GCNGC | 6 cut(s) | 200, 248, 251, 1191, 1512, 1857 |
| FokI | GGATG | 9 cut(s) | 175, 277, 416, 926, 1076, 1082, 1361, 1496, 2073 |
| FriOI | GRGCYC | 2 cut(s) | 387, 1647 |
| Fsp4HI | GCNGC | 6 cut(s) | 200, 248, 251, 1191, 1512, 1857 |
| FspBI | CTAG | 3 cut(s) | 102, 1379, 1745 |
| GlaI | GCGC | 4 cut(s) | 198, 502, 504, 1373 |
| GluI | GCNGC | 6 cut(s) | 200, 248, 251, 1191, 1512, 1857 |
| GsaI | CCCAGC | 1 cut(s) | 1993 |
| GsuI | CTGGAG | 1 cut(s) | 665 |
| HaeII | RGCGCY | 1 cut(s) | 200 |
| HaeIII | GGCC | 3 cut(s) | 323, 720, 1687 |
| HapII | CCGG | 3 cut(s) | 160, 530, 2090 |
| HgaI | GACGC | 4 cut(s) | 770, 1089, 1284, 1443 |
| HhaI | GCGC | 4 cut(s) | 199, 503, 505, 1374 |
| Hin1I | GRCGYC | 2 cut(s) | 197, 762 |
| Hin1II | CATG | 2 cut(s) | 587, 1234 |
| Hin6I | GCGC | 4 cut(s) | 197, 501, 503, 1372 |
| HinP1I | GCGC | 4 cut(s) | 197, 501, 503, 1372 |
| HincII | GTYRAC | 1 cut(s) | 598 |
| HindII | GTYRAC | 1 cut(s) | 598 |
| HindIII | AAGCTT | 1 cut(s) | 2077 |
| HpaII | CCGG | 3 cut(s) | 160, 530, 2090 |
| HphI | GGTGA | 3 cut(s) | 1322, 1795, 1929 |
| Hpy166II | GTNNAC | 3 cut(s) | 91, 168, 598 |
| Hpy188III | TCNNGA | 9 cut(s) | 109, 139, 572, 1021, 1254, 1505, 1745, 1823, 1978 |
| Hpy8I | GTNNAC | 3 cut(s) | 91, 168, 598 |
| Hpy99I | CGWCG | 7 cut(s) | 53, 281, 284, 439, 442, 770, 1945 |
| HpyCH4III | ACNGT | 8 cut(s) | 658, 1238, 1310, 1408, 1499, 1788, 1887, 1941 |
| HpyCH4IV | ACGT | 3 cut(s) | 114, 411, 1708 |
| HpyCH4V | TGCA | 8 cut(s) | 91, 560, 608, 998, 1036, 1193, 1682, 2032 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 208, 217, 226, 1862, 2090 |
| HpyF3I | CTNAG | 7 cut(s) | 669, 792, 824, 1354, 1424, 1689, 1880 |
| HpySE526I | ACGT | 3 cut(s) | 114, 411, 1708 |
| Hsp92I | GRCGYC | 2 cut(s) | 197, 762 |
| Hsp92II | CATG | 2 cut(s) | 587, 1234 |
| HspAI | GCGC | 4 cut(s) | 197, 501, 503, 1372 |
| KasI | GGCGCC | 1 cut(s) | 196 |
| KflI | GGGWCCC | 1 cut(s) | 97 |
| KpnI | GGTACC | 1 cut(s) | 995 |
| Ksp22I | TGATCA | 2 cut(s) | 1111, 1501 |
| LguI | GCTCTTC | 1 cut(s) | 1536 |
| LmnI | GCTCC | 3 cut(s) | 382, 781, 1673 |
| Lsp1109I | GCAGC | 3 cut(s) | 234, 1177, 1523 |
| LweI | GCATC | 5 cut(s) | 1177, 1282, 1383, 1669, 1998 |
| MaeI | CTAG | 3 cut(s) | 102, 1379, 1745 |
| MaeII | ACGT | 3 cut(s) | 114, 411, 1708 |
| MaeIII | GTNAC | 3 cut(s) | 652, 851, 1493 |
| MfeI | CAATTG | 2 cut(s) | 561, 858 |
| MflI | RGATCY | 4 cut(s) | 1571, 1780, 1825, 1834 |
| MhlI | GDGCHC | 3 cut(s) | 93, 387, 1647 |
| Mly113I | GGCGCC | 1 cut(s) | 197 |
| MlyI | GAGTC | 9 cut(s) | 47, 140, 541, 672, 848, 941, 1018, 1424, 1466 |
| MmeI | TCCRAC | 1 cut(s) | 1853 |
| MroXI | GAANNNNTTC | 1 cut(s) | 702 |
| MseI | TTAA | 7 cut(s) | 567, 932, 960, 1344, 1964, 1968, 2119 |
| MspA1I | CMGCKG | 1 cut(s) | 202 |
| MspI | CCGG | 3 cut(s) | 160, 530, 2090 |
| MspR9I | CCNGG | 3 cut(s) | 507, 1077, 1325 |
| MunI | CAATTG | 2 cut(s) | 561, 858 |
| MvaI | CCWGG | 3 cut(s) | 507, 1077, 1325 |
| MvnI | CGCG | 3 cut(s) | 151, 503, 1437 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 208, 217, 226, 1862, 2090 |
| NarI | GGCGCC | 1 cut(s) | 197 |
| NlaIII | CATG | 2 cut(s) | 587, 1234 |
| NlaIV | GGNNCC | 7 cut(s) | 98, 99, 107, 198, 993, 1827, 2073 |
| NmeAIII | GCCGAG | 2 cut(s) | 366, 1846 |
| NmuCI | GTSAC | 2 cut(s) | 851, 1493 |
| NspI | RCATGY | 2 cut(s) | 587, 1234 |
| NspV | TTCGAA | 1 cut(s) | 1776 |
| PacI | TTAATTAA | 1 cut(s) | 1968 |
| PaeR7I | CTCGAG | 2 cut(s) | 230, 1646 |
| PalAI | GGCGCGCC | 1 cut(s) | 501 |
| PauI | GCGCGC | 1 cut(s) | 501 |
| PciI | ACATGT | 1 cut(s) | 1230 |
| PciSI | GCTCTTC | 1 cut(s) | 1536 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 434 |
| PdmI | GAANNNNTTC | 1 cut(s) | 702 |
| PfeI | GAWTC | 2 cut(s) | 180, 398 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1330 |
| PkrI | GCNGC | 6 cut(s) | 201, 249, 252, 1192, 1513, 1858 |
| PleI | GAGTC | 9 cut(s) | 46, 140, 541, 672, 848, 941, 1018, 1423, 1466 |
| PluTI | GGCGCC | 1 cut(s) | 200 |
| PpsI | GAGTC | 9 cut(s) | 46, 140, 541, 672, 848, 941, 1018, 1423, 1466 |
| PpuMI | RGGWCCY | 2 cut(s) | 97, 2071 |
| PscI | ACATGT | 1 cut(s) | 1230 |
| Psp124BI | GAGCTC | 2 cut(s) | 387, 1647 |
| Psp1406I | AACGTT | 1 cut(s) | 114 |
| Psp5II | RGGWCCY | 2 cut(s) | 97, 2071 |
| Psp6I | CCWGG | 3 cut(s) | 505, 1075, 1323 |
| PspFI | CCCAGC | 1 cut(s) | 1989 |
| PspGI | CCWGG | 3 cut(s) | 505, 1075, 1323 |
| PspN4I | GGNNCC | 7 cut(s) | 98, 99, 107, 198, 993, 1827, 2073 |
| PspPI | GGNCC | 5 cut(s) | 97, 710, 1520, 1685, 2071 |
| PspPPI | RGGWCCY | 2 cut(s) | 97, 2071 |
| PspXI | VCTCGAGB | 2 cut(s) | 230, 1646 |
| PstI | CTGCAG | 1 cut(s) | 1195 |
| PsuI | RGATCY | 4 cut(s) | 1571, 1780, 1825, 1834 |
| PteI | GCGCGC | 1 cut(s) | 501 |
| RsaI | GTAC | 3 cut(s) | 257, 993, 1235 |
| RsaNI | GTAC | 3 cut(s) | 256, 992, 1234 |
| SacI | GAGCTC | 2 cut(s) | 387, 1647 |
| SapI | GCTCTTC | 1 cut(s) | 1536 |
| SaqAI | TTAA | 7 cut(s) | 567, 932, 960, 1344, 1964, 1968, 2119 |
| SatI | GCNGC | 6 cut(s) | 200, 248, 251, 1191, 1512, 1857 |
| Sau96I | GGNCC | 5 cut(s) | 97, 710, 1520, 1685, 2071 |
| ScaI | AGTACT | 1 cut(s) | 257 |
| SchI | GAGTC | 9 cut(s) | 47, 140, 541, 672, 848, 941, 1018, 1424, 1466 |
| ScrFI | CCNGG | 3 cut(s) | 507, 1077, 1325 |
| SduI | GDGCHC | 3 cut(s) | 93, 387, 1647 |
| SfaNI | GCATC | 5 cut(s) | 1177, 1282, 1383, 1669, 1998 |
| SfcI | CTRYAG | 2 cut(s) | 259, 1191 |
| SfoI | GGCGCC | 1 cut(s) | 198 |
| Sfr274I | CTCGAG | 2 cut(s) | 230, 1646 |
| SfuI | TTCGAA | 1 cut(s) | 1776 |
| SgsI | GGCGCGCC | 1 cut(s) | 501 |
| SinI | GGWCC | 4 cut(s) | 97, 710, 1520, 2071 |
| SlaI | CTCGAG | 2 cut(s) | 230, 1646 |
| SmlI | CTYRAG | 4 cut(s) | 230, 1026, 1575, 1646 |
| SmoI | CTYRAG | 4 cut(s) | 230, 1026, 1575, 1646 |
| SsiI | CCGC | 9 cut(s) | 151, 200, 250, 305, 390, 518, 802, 1838, 1857 |
| SspDI | GGCGCC | 1 cut(s) | 196 |
| SspMI | CTAG | 3 cut(s) | 102, 1379, 1745 |
| SstI | GAGCTC | 2 cut(s) | 387, 1647 |
| StyD4I | CCNGG | 3 cut(s) | 505, 1075, 1323 |
| StyI | CCWWGG | 3 cut(s) | 42, 101, 1719 |
| TaaI | ACNGT | 8 cut(s) | 658, 1238, 1310, 1408, 1499, 1788, 1887, 1941 |
| TaiI | ACGT | 3 cut(s) | 117, 414, 1711 |
| TaqII | GACCGA | 1 cut(s) | 1914 |
| TatI | WGTACW | 1 cut(s) | 255 |
| TauI | GCSGC | 3 cut(s) | 202, 253, 1859 |
| TfiI | GAWTC | 2 cut(s) | 180, 398 |
| Tru1I | TTAA | 7 cut(s) | 567, 932, 960, 1344, 1964, 1968, 2119 |
| Tru9I | TTAA | 7 cut(s) | 567, 932, 960, 1344, 1964, 1968, 2119 |
| TscAI | CASTG | 5 cut(s) | 98, 615, 1111, 1504, 1884 |
| TseFI | GTSAC | 2 cut(s) | 851, 1493 |
| TseI | GCWGC | 3 cut(s) | 247, 1190, 1511 |
| Tsp45I | GTSAC | 2 cut(s) | 851, 1493 |
| TspDTI | ATGAA | 8 cut(s) | 486, 659, 704, 747, 765, 928, 1302, 1997 |
| TspGWI | ACGGA | 8 cut(s) | 76, 185, 297, 327, 455, 654, 1111, 1686 |
| TspRI | CASTG | 5 cut(s) | 98, 615, 1111, 1504, 1884 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1330 |
| VneI | GTGCAC | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 4 cut(s) | 97, 710, 1520, 2071 |
| XapI | RAATTY | 2 cut(s) | 1100, 2026 |
| XbaI | TCTAGA | 1 cut(s) | 1744 |
| XceI | RCATGY | 2 cut(s) | 587, 1234 |
| XhoI | CTCGAG | 2 cut(s) | 230, 1646 |
| XmaJI | CCTAGG | 1 cut(s) | 101 |
| XmnI | GAANNNNTTC | 1 cut(s) | 702 |
| XspI | CTAG | 3 cut(s) | 102, 1379, 1745 |
| ZrmI | AGTACT | 1 cut(s) | 257 |