Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001552

Physical Location & Seq

Genomic Coordinates Reverse (-)

5868520 .. 5872829

Gene Structure 4310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0073700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAGACAGGCCAGATATCTCCCAAGTAATAAAGGCTATATGGAACATTTTATTCGAACTGGCTGTGGTTCTGTGTCTGTTATAGTTTATGGAGACCAAGATAAGCCGGCACTTATCACGTATCCTGATTTAGCTCTAAATCATATGTCTTGTTTCCAAGGGTTATTCTTTTGTCCTGAAGCAGCTTCTTTGCTGCTCCACAACTTCTGCATATACCATATTAGTCCTCCTGGTCATGAGTTAGGAGCTGCTTCGATTAGTCTTGATGATCCTGTGCCTTCTGCTGATGACTTGGCAGATCAGATCCTTGAGGTTCTAAACTTTTTCGGGCTTGGTGCAGTTATGTGCATGGGAGTGACGGCGGGTGCTTATATCCTTTCCCTATTTGCTATGAAATATAGGGAACGCGTTCTTGGTTTGATACTTGTATCCCCATTATGCAGAGCACCATCTTGGACTGAATGGTTTTATAATAAGGTGATATCAAACATGCTATATTTCTATGGCATGTGTGGTTTGTTAAAGGAGTGTTTACTTCAGCGTTACTTCAGTAAGGAGGTTCGTGGTAGTGCTGAAGTTCCAGAGTCGGATATAGTTCAAGCATGCAGAAAATTATTGGAAGAGAGGCAGAGTTCAAATGTTTGGAGATTTCTTCAAGCAATTAATAGGAGACCTGACATAACTGAAGGATTGAAGTCACTAAGGTGTCGCACTCTCATTTTTGTTGGGGATAGCTCTCCTTTCCACTCTGAGGCTCTCCACATGACCTCAAAGTTGGATAGAAGATATAGTGCCTTAGTAGAGGTCCAGGCTTGTGGATCGATGGTGACAGAGGAGCAGCCACATGCAATGTTGATACCCATGGAGTACTTCTTCATGGGGTATGGTTTGTACAGACCGTGTCATTTCAGCGAGAGCCCAAGGAGCCCACTCAGCCCATCTTGCATCTCCCCTGAGCTTCTCTCCCCGGAAAGCATGGGTCTGAAGCTAAAACCAATCAAGACCCGTGTTTCGCTCGGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alba TAXi_C TAXi_N

Protein Analysis

341

Amino Acids

38.31

Weight (kDa)

6.75

Isoelectric Point (pI)

55.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ndr	PF03096	15 - 299	3.5e-116	Ndr family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17760 AT3G51330 AT3G51330 AT3G51330 AT3G51340 AT3G51340 AT3G51340 AT3G51340 AT3G51350
fragaria_vesca	FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190
malus_domestica	MD02G1124400.v1.1 MD02G1124500.v1.1 MD15G1238500.v1.1
prunus_persica	Prupe.7G173900_v2.0.a1
pyrus_communis	pycom02g09720
rosa_chinensis	RchiOBHm_Chr2g0098521 RchiOBHm_Chr2g0098531 RchiOBHm_Chr2g0098551 RchiOBHm_Chr2g0098601 RchiOBHm_Chr5g0032521
rosa_laevigata	RLG00000016804 RLG00000016805 RLG00000016809 RLG00000016811 RLG00000036276
rosa_roxburghii	Rroxscaffold_2G00143860 Rroxscaffold_2G00143910
rosa_rugosa	Rorug02G0073700
rosa_samantha	Rh2AG121000 Rh2AG121200 Rh2AG473700 Rh2BG124100 Rh2BG124200 Rh2BG124400 Rh2BG124600 Rh2BG124800 Rh2CG125600 Rh2CG125700 Rh2CG459400 Rh2DG126200 Rh2DG126700 Rh2DG126900 Rh5AG278400
rosa_wichuraiana	Rw0G004110 Rw2G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	471, 1024
AccII	CGCG	1 cut(s)	408
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	3 cut(s)	263, 298, 826
AcuI	CTGAAG	6 cut(s)	198, 521, 532, 594, 705, 1004
AfaI	GTAC	2 cut(s)	869, 893
AfiI	CCNNNNNNNGG	1 cut(s)	751
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	4 cut(s)	599, 636, 656, 694
AjnI	CCWGG	2 cut(s)	229, 807
AjuI	GAANNNNNNNTTGG	2 cut(s)	396, 428
AleI	CACNNNNGTG	1 cut(s)	703
AluBI	AGCT	6 cut(s)	134, 185, 248, 735, 958, 988
AluI	AGCT	6 cut(s)	134, 185, 248, 735, 958, 988
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	2 cut(s)	87, 664
AlwI	GGATC	3 cut(s)	263, 298, 826
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	4 cut(s)	182, 193, 248, 838
ArsI	GACNNNNNNTTYG	2 cut(s)	994, 1026
AseI	ATTAAT	1 cut(s)	663
Asp700I	GAANNNNTTC	1 cut(s)	408
AspS9I	GGNCC	1 cut(s)	805
AsuC2I	CCSGG	1 cut(s)	968
AsuHPI	GGTGA	2 cut(s)	490, 838
AsuII	TTCGAA	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	805
BanII	GRGCYC	2 cut(s)	920, 929
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	4 cut(s)	180, 194, 235, 850
BccI	CCATC	3 cut(s)	457, 817, 946
BceAI	ACGGC	1 cut(s)	375
BciT130I	CCWGG	2 cut(s)	231, 809
BciVI	GTATCC	2 cut(s)	132, 439
BcnI	CCSGG	1 cut(s)	968
BcoDI	GTCTC	2 cut(s)	87, 664
BfuI	GTATCC	2 cut(s)	132, 439
BisI	GCNGC	4 cut(s)	183, 194, 249, 839
BlsI	GCNGC	4 cut(s)	184, 195, 250, 840
BmcAI	AGTACT	1 cut(s)	869
Bme1390I	CCNGG	3 cut(s)	231, 809, 968
Bme18I	GGWCC	1 cut(s)	805
BmgT120I	GGNCC	1 cut(s)	805
BmiI	GGNNCC	1 cut(s)	926
BmrFI	CCNGG	3 cut(s)	231, 809, 968
BmsI	GCATC	1 cut(s)	954
BplI	GAGNNNNNCTC	2 cut(s)	947, 979
Bpu10I	CCTNAGC	1 cut(s)	954
Bpu14I	TTCGAA	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	968
Bsa29I	ATCGAT	1 cut(s)	821
BsaAI	YACGTR	1 cut(s)	120
BsaI	GGTCTC	2 cut(s)	87, 664
BsaJI	CCNNGG	4 cut(s)	157, 861, 920, 966
Bsc4I	CCNNNNNNNGG	1 cut(s)	751
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	855
BseBI	CCWGG	2 cut(s)	231, 809
BseCI	ATCGAT	1 cut(s)	821
BseDI	CCNNGG	4 cut(s)	157, 861, 920, 966
BseLI	CCNNNNNNNGG	1 cut(s)	751
BseMI	GCAATG	1 cut(s)	855
BseMII	CTCAG	3 cut(s)	741, 945, 946
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	848
BseXI	GCAGC	4 cut(s)	180, 194, 235, 850
BsgI	GTGCAG	1 cut(s)	357
Bsh1236I	CGCG	1 cut(s)	408
BshFI	GGCC	1 cut(s)	11
BshVI	ATCGAT	1 cut(s)	821
BsiHKAI	GWGCWC	1 cut(s)	448
BsiSI	CCGG	2 cut(s)	107, 968
BslI	CCNNNNNNNGG	1 cut(s)	751
BsmAI	GTCTC	2 cut(s)	87, 664
BsnI	GGCC	1 cut(s)	11
Bso31I	GGTCTC	2 cut(s)	87, 664
Bsp119I	TTCGAA	1 cut(s)	55
Bsp1286I	GDGCHC	3 cut(s)	448, 920, 929
Bsp1407I	TGTACA	1 cut(s)	891
Bsp143I	GATC	4 cut(s)	268, 298, 303, 818
Bsp19I	CCATGG	1 cut(s)	861
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	3 cut(s)	742, 945, 946
BspDI	ATCGAT	1 cut(s)	821
BspFNI	CGCG	1 cut(s)	408
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	926
BspPI	GGATC	3 cut(s)	263, 298, 826
BspT104I	TTCGAA	1 cut(s)	55
BspTNI	GGTCTC	2 cut(s)	87, 664
BsrDI	GCAATG	1 cut(s)	855
BsrFI	RCCGGY	1 cut(s)	106
BsrGI	TGTACA	1 cut(s)	891
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	4 cut(s)	157, 861, 920, 966
BssMI	GATC	4 cut(s)	268, 298, 303, 818
BssT1I	CCWWGG	3 cut(s)	157, 861, 920
Bst2UI	CCWGG	2 cut(s)	231, 809
Bst4CI	ACNGT	1 cut(s)	900
Bst6I	CTCTTC	1 cut(s)	615
BstAUI	TGTACA	1 cut(s)	891
BstBAI	YACGTR	1 cut(s)	120
BstBI	TTCGAA	1 cut(s)	55
BstC8I	GCNNGC	2 cut(s)	108, 604
BstDEI	CTNAG	5 cut(s)	701, 750, 796, 932, 954
BstDSI	CCRYGG	1 cut(s)	861
BstFNI	CGCG	1 cut(s)	408
BstKTI	GATC	4 cut(s)	271, 301, 306, 821
BstMAI	GTCTC	2 cut(s)	87, 664
BstMBI	GATC	4 cut(s)	268, 298, 303, 818
BstMWI	GCNNNNNNNGC	3 cut(s)	924, 933, 942
BstNI	CCWGG	2 cut(s)	231, 809
BstNSI	RCATGY	4 cut(s)	493, 511, 606, 848
BstSCI	CCNGG	3 cut(s)	229, 807, 966
BstUI	CGCG	1 cut(s)	408
BstV1I	GCAGC	4 cut(s)	180, 194, 235, 850
BstX2I	RGATCY	1 cut(s)	303
BstXI	CCANNNNNNTGG	1 cut(s)	815
BstYI	RGATCY	1 cut(s)	303
Bsu15I	ATCGAT	1 cut(s)	821
BsuI	GTATCC	2 cut(s)	132, 439
BsuRI	GGCC	1 cut(s)	11
BsuTUI	ATCGAT	1 cut(s)	821
BtgI	CCRYGG	1 cut(s)	861
Cac8I	GCNNGC	2 cut(s)	108, 604
CciI	TCATGA	1 cut(s)	235
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	805
ClaI	ATCGAT	1 cut(s)	821
Csp6I	GTAC	2 cut(s)	868, 892
CviQI	GTAC	2 cut(s)	868, 892
DdeI	CTNAG	5 cut(s)	701, 750, 796, 932, 954
DpnI	GATC	4 cut(s)	270, 300, 305, 820
DpnII	GATC	4 cut(s)	268, 298, 303, 818
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
Eco130I	CCWWGG	3 cut(s)	157, 861, 920
Eco24I	GRGCYC	2 cut(s)	920, 929
Eco31I	GGTCTC	2 cut(s)	87, 664
Eco32I	GATATC	2 cut(s)	17, 483
Eco47I	GGWCC	1 cut(s)	805
Eco57I	CTGAAG	6 cut(s)	198, 521, 532, 594, 705, 1004
EcoRII	CCWGG	2 cut(s)	229, 807
EcoRV	GATATC	2 cut(s)	17, 483
EcoT14I	CCWWGG	3 cut(s)	157, 861, 920
EcoT38I	GRGCYC	2 cut(s)	920, 929
ErhI	CCWWGG	3 cut(s)	157, 861, 920
FauI	CCCGC	1 cut(s)	355
FauNDI	CATATG	1 cut(s)	144
Fnu4HI	GCNGC	4 cut(s)	183, 194, 249, 839
FriOI	GRGCYC	2 cut(s)	920, 929
Fsp4HI	GCNGC	4 cut(s)	183, 194, 249, 839
GluI	GCNGC	4 cut(s)	183, 194, 249, 839
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	2 cut(s)	107, 968
HinfI	GANTC	1 cut(s)	584
HpaII	CCGG	2 cut(s)	107, 968
HphI	GGTGA	2 cut(s)	490, 838
Hpy166II	GTNNAC	1 cut(s)	533
Hpy188I	TCNGA	5 cut(s)	303, 589, 751, 984, 1019
Hpy188III	TCNNGA	6 cut(s)	125, 176, 236, 263, 581, 1000
Hpy8I	GTNNAC	1 cut(s)	533
HpyAV	CCTTC	2 cut(s)	288, 680
HpyCH4III	ACNGT	1 cut(s)	900
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	7 cut(s)	210, 338, 348, 441, 606, 848, 945
HpyF10VI	GCNNNNNNNGC	3 cut(s)	924, 933, 942
HpyF3I	CTNAG	5 cut(s)	701, 750, 796, 932, 954
HpySE526I	ACGT	1 cut(s)	119
KroI	GCCGGC	1 cut(s)	106
KroNI	GCCGGC	1 cut(s)	108
Kzo9I	GATC	4 cut(s)	268, 298, 303, 818
LmnI	GCTCC	4 cut(s)	201, 245, 835, 924
Lsp1109I	GCAGC	4 cut(s)	180, 194, 235, 850
LweI	GCATC	1 cut(s)	954
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	4 cut(s)	355, 542, 696, 826
MalI	GATC	4 cut(s)	270, 300, 305, 820
MboI	GATC	4 cut(s)	268, 298, 303, 818
MboII	GAAGA	4 cut(s)	632, 644, 795, 865
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	3 cut(s)	448, 920, 929
MluCI	AATT	2 cut(s)	611, 660
MluI	ACGCGT	1 cut(s)	406
MlyI	GAGTC	1 cut(s)	593
MmeI	TCCRAC	2 cut(s)	567, 756
MnlI	CCTC	8 cut(s)	237, 304, 550, 618, 745, 778, 796, 826
MroNI	GCCGGC	1 cut(s)	106
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	2 cut(s)	521, 663
MslI	CAYNNNNRTG	2 cut(s)	353, 703
MspI	CCGG	2 cut(s)	107, 968
MspR9I	CCNGG	3 cut(s)	231, 809, 968
MvaI	CCWGG	2 cut(s)	231, 809
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	3 cut(s)	924, 933, 942
NaeI	GCCGGC	1 cut(s)	108
NciI	CCSGG	1 cut(s)	968
NcoI	CCATGG	1 cut(s)	861
NdeI	CATATG	1 cut(s)	144
NdeII	GATC	4 cut(s)	268, 298, 303, 818
NgoMIV	GCCGGC	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	926
NmuCI	GTSAC	3 cut(s)	355, 696, 826
NspI	RCATGY	4 cut(s)	493, 511, 606, 848
NspV	TTCGAA	1 cut(s)	55
OliI	CACNNNNGTG	1 cut(s)	703
PaeI	GCATGC	1 cut(s)	606
PagI	TCATGA	1 cut(s)	235
PdiI	GCCGGC	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	408
PflFI	GACNNNGTC	1 cut(s)	900
PkrI	GCNGC	4 cut(s)	184, 195, 250, 840
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
Ppu21I	YACGTR	1 cut(s)	120
PshBI	ATTAAT	1 cut(s)	663
PsiI	TTATAA	2 cut(s)	471, 1024
Psp6I	CCWGG	2 cut(s)	229, 807
PspGI	CCWGG	2 cut(s)	229, 807
PspN4I	GGNNCC	1 cut(s)	926
PspPI	GGNCC	1 cut(s)	805
PsuI	RGATCY	1 cut(s)	303
PsyI	GACNNNGTC	1 cut(s)	900
RsaI	GTAC	2 cut(s)	869, 893
RsaNI	GTAC	2 cut(s)	868, 892
RseI	CAYNNNNRTG	2 cut(s)	353, 703
SaqAI	TTAA	2 cut(s)	521, 663
SatI	GCNGC	4 cut(s)	183, 194, 249, 839
Sau3AI	GATC	4 cut(s)	268, 298, 303, 818
Sau96I	GGNCC	1 cut(s)	805
ScaI	AGTACT	1 cut(s)	869
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	3 cut(s)	231, 809, 968
SduI	GDGCHC	3 cut(s)	448, 920, 929
SfaNI	GCATC	1 cut(s)	954
SfuI	TTCGAA	1 cut(s)	55
SinI	GGWCC	1 cut(s)	805
SmiMI	CAYNNNNRTG	2 cut(s)	353, 703
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SphI	GCATGC	1 cut(s)	606
Sse9I	AATT	2 cut(s)	611, 660
SsiI	CCGC	1 cut(s)	362
StyD4I	CCNGG	3 cut(s)	229, 807, 966
StyI	CCWWGG	3 cut(s)	157, 861, 920
TaaI	ACNGT	1 cut(s)	900
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	3 cut(s)	55, 254, 821
TasI	AATT	2 cut(s)	611, 660
TatI	WGTACW	2 cut(s)	867, 891
Tru1I	TTAA	2 cut(s)	521, 663
Tru9I	TTAA	2 cut(s)	521, 663
TseFI	GTSAC	3 cut(s)	355, 696, 826
TseI	GCWGC	4 cut(s)	182, 193, 248, 838
Tsp45I	GTSAC	3 cut(s)	355, 696, 826
TspDTI	ATGAA	2 cut(s)	407, 865
Tth111I	GACNNNGTC	1 cut(s)	900
VpaK11BI	GGWCC	1 cut(s)	805
VspI	ATTAAT	1 cut(s)	663
XceI	RCATGY	4 cut(s)	493, 511, 606, 848
XmnI	GAANNNNTTC	1 cut(s)	408
ZrmI	AGTACT	1 cut(s)	869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.