Rw0G004110

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00162
Physical Location & Seq
Forward (+)
8112 .. 18563
10452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G004110.1

Sequence Viewer

Length: 1449 bp
ATGGCCTCCTGGACTTCCAGAGCTCCTAGTAGCGACTCTACTCTCTTGCCTTTGTTACTGGTTTTCGTATTGGGTTTGGCTTGTCGGAGCTGTAACGGGTTTGGGACGTTCCGATTTGATTTCCACCACCGCTCCTCGGATCTCGTCACCGGAATTCTTGGCTACGATGAGCTCCCGCAAAAGGGGAGTCCTGAATATTACGCTGCCATGACTCATCGGGACAGGTTGATCCGAGGTCGCCACCTCGGCGAAACGACACCGCTTACTTTCGTTTACGGCAACAATACTTACCGGATTGGCGCTTTTGGAAACTTGCATTATGCGAATGTTTCTGTTGGGACTCCAAGGACTTCGTATCTTGTGGCTTTGGATACTGGCAGTGATTTATTGTGGTTGCCGTGTGATTGTATCAGTTGTGTGAAGGGATTTAATACATCAGATGGAGAGGTGGTGGATTTTGACATCTACAGCCCTAATAAATCAACAACAAGCAAAAAGGTTCCTTGCAACAGCACATATTGCGAACAACAACAGCGTTGCTCTTCACCAAGTAGTGATTGTCGTTACACTATTAACTATCTTTCTCCTAACAGTTCATCTTCTGGAATCGTAGTAGAGGACGTTCTGCACTTGATTACTGATGATGCTAAACTAAAAGGTGTCGAGGCACCGATAGCCTTTGGGTGTGGTAGGAATCAGACTGGTATATTTTTAAGTGGGGCAGCTCCCAATGGTCTATTAGGGCTTGGTATGGAGGATATATCCATTCCTAGCATGTTAGCAAAACAGGGGCTTGCTTCAGATTCTTTTTCCATGTGTTTTGGAATTGATGGAGGTGGGAGAATCAGATTTGGTGATAATGGAAGTGTAGACCAACCAGAAACACCATTCTATGTCAGAGATATGCATCCAACTTACAACATTACTGTTACTCAAATAGCCGTTGGAAAAAGTGTTACTGATTTTGAATTCTATGCAATTTGGGACTCTGGTACCTCATTTACGTACCTAAATGATCCAGCTTACACCCAGATTTCTAAGAGTTTCAACAGCGCCATCAATGATAAGCGGGTTACAAATAATTCTGATCTTCCTTTTGAATATTGTTATACAGTCAGTCCAAATCAAACGTTGAATTTGACAATGAAAGGCGGAAAGCATTATAATGTTATTGATCCACTTGCAGTTCTTTCTGATGGGGAAGGAAATATACTGCTCTATTGTCTGGGCGTTGTCAAAAGTGAAGATGAAAATATCATTGGACAAAACTTCATGACCGGTTACCGTATAATCTTTGATCGCGAGAAGCTGGTACTGGGTTGGACAGAGTCAGATTTTAACACCACTTCTAAAATACCATCAGCCCCATCACCAAGTGATTCACCCAAATTGAACTCTTTTACTTGTGCACTCATCATGGTTCCTTCTGCAATTTTTGCCATTGTTTAA

Protein Analysis

482

Amino Acids

52.62

Weight (kDa)

5.15

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 107 - 286 3.6e-37 Xylanase inhibitor N-terminal
Asp PF00026 107 - 438 2.2e-24 Eukaryotic aspartyl protease
TAXi_C PF14541 306 - 442 2.2e-13 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1164
Acc65I GGTACC 1 cut(s) 992
AccB1I GGYRCC 2 cut(s) 667, 992
AccBSI CCGCTC 1 cut(s) 132
AccI GTMKAC 1 cut(s) 870
AccII CGCG 1 cut(s) 1302
AciI CCGC 5 cut(s) 130, 176, 260, 1069, 1152
AclI AACGTT 1 cut(s) 1130
AclWI GGATC 4 cut(s) 147, 223, 1010, 1169
AcsI RAATTY 3 cut(s) 153, 968, 1135
AcuI CTGAAG 1 cut(s) 783
AdeI CACNNNGTG 1 cut(s) 1376
AfaI GTAC 3 cut(s) 994, 1007, 1314
AfiI CCNNNNNNNGG 3 cut(s) 136, 181, 182
AgeI ACCGGT 1 cut(s) 1277
AgsI TTSAA 5 cut(s) 968, 1048, 1100, 1135, 1393
AjnI CCWGG 1 cut(s) 8
AjuI GAANNNNNNNTTGG 2 cut(s) 1242, 1274
AluBI AGCT 6 cut(s) 23, 90, 172, 725, 1022, 1309
AluI AGCT 6 cut(s) 23, 90, 172, 725, 1022, 1309
Alw21I GWGCWC 3 cut(s) 25, 174, 1411
Alw44I GTGCAC 1 cut(s) 1407
AlwI GGATC 4 cut(s) 147, 223, 1010, 1169
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 1407
ApeKI GCWGC 2 cut(s) 203, 722
ApoI RAATTY 3 cut(s) 153, 968, 1135
ArsI GACNNNNNNTTYG 2 cut(s) 172, 204
AsiGI ACCGGT 1 cut(s) 1277
Asp718I GGTACC 1 cut(s) 992
AspLEI GCGC 2 cut(s) 302, 1055
AsuHPI GGTGA 5 cut(s) 139, 537, 866, 1362, 1374
BaeGI GKGCMC 1 cut(s) 1411
BaeI ACNNNNGTAYC 2 cut(s) 976, 1009
BanI GGYRCC 2 cut(s) 667, 992
BanII GRGCYC 2 cut(s) 25, 174
BarI GAAGNNNNNNTAC 2 cut(s) 1194, 1226
Bbv12I GWGCWC 3 cut(s) 25, 174, 1411
BbvI GCAGC 2 cut(s) 190, 734
BccI CCATC 6 cut(s) 434, 824, 1064, 1190, 1366, 1375
BceAI ACGGC 3 cut(s) 292, 382, 926
BciT130I CCWGG 1 cut(s) 10
BciVI GTATCC 1 cut(s) 364
BfaI CTAG 2 cut(s) 27, 771
BfmI CTRYAG 1 cut(s) 466
BfoI RGCGCY 2 cut(s) 303, 1056
BfuI GTATCC 1 cut(s) 364
BglI GCCNNNNNGGC 1 cut(s) 246
BisI GCNGC 2 cut(s) 204, 723
BlsI GCNGC 2 cut(s) 205, 724
Bme1390I CCNGG 1 cut(s) 10
BmiI GGNNCC 4 cut(s) 501, 669, 994, 1422
BmrFI CCNGG 1 cut(s) 10
BmrI ACTGGG 1 cut(s) 1325
BmsI GCATC 2 cut(s) 634, 916
BmuI ACTGGG 1 cut(s) 1325
BsaAI YACGTR 1 cut(s) 1005
BsaBI GATNNNNATC 1 cut(s) 906
BsaJI CCNNGG 4 cut(s) 135, 232, 244, 344
BsaWI WCCGGW 3 cut(s) 149, 291, 1277
BsaXI ACNNNNNCTCC 4 cut(s) 116, 146, 435, 465
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 181, 182
Bse118I RCCGGY 1 cut(s) 1277
Bse1I ACTGG 4 cut(s) 63, 379, 706, 1320
Bse8I GATNNNNATC 1 cut(s) 906
BseBI CCWGG 1 cut(s) 10
BseDI CCNNGG 4 cut(s) 135, 232, 244, 344
BseGI GGATG 1 cut(s) 907
BseJI GATNNNNATC 1 cut(s) 906
BseLI CCNNNNNNNGG 3 cut(s) 136, 181, 182
BseNI ACTGG 4 cut(s) 63, 379, 706, 1320
BseRI GAGGAG 1 cut(s) 124
BseSI GKGCMC 1 cut(s) 1411
BseXI GCAGC 2 cut(s) 190, 734
BsgI GTGCAG 1 cut(s) 611
Bsh1236I CGCG 1 cut(s) 1302
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 2 cut(s) 667, 992
BshTI ACCGGT 1 cut(s) 1277
BsiHKAI GWGCWC 3 cut(s) 25, 174, 1411
BsiSI CCGG 3 cut(s) 150, 292, 1278
BslFI GGGAC 4 cut(s) 118, 233, 352, 998
BslI CCNNNNNNNGG 3 cut(s) 136, 181, 182
BsmFI GGGAC 4 cut(s) 118, 233, 352, 998
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 3 cut(s) 25, 174, 1411
Bsp143I GATC 6 cut(s) 139, 228, 1015, 1087, 1174, 1297
Bsp68I TCGCGA 1 cut(s) 1302
BspACI CCGC 5 cut(s) 130, 176, 260, 1069, 1152
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 1302
BspHI TCATGA 1 cut(s) 1272
BspLI GGNNCC 4 cut(s) 501, 669, 994, 1422
BspPI GGATC 4 cut(s) 147, 223, 1010, 1169
BspQI GCTCTTC 1 cut(s) 547
BspT107I GGYRCC 2 cut(s) 667, 992
BsrBI CCGCTC 1 cut(s) 132
BsrFI RCCGGY 1 cut(s) 1277
BsrI ACTGG 4 cut(s) 63, 379, 706, 1320
BssAI RCCGGY 1 cut(s) 1277
BssECI CCNNGG 4 cut(s) 135, 232, 244, 344
BssMI GATC 6 cut(s) 139, 228, 1015, 1087, 1174, 1297
BssT1I CCWWGG 1 cut(s) 344
Bst2UI CCWGG 1 cut(s) 10
Bst4CI ACNGT 4 cut(s) 593, 928, 1114, 1286
Bst6I CTCTTC 1 cut(s) 547
BstAPI GCANNNNNTGC 2 cut(s) 519, 1436
BstBAI YACGTR 1 cut(s) 1005
BstC8I GCNNGC 1 cut(s) 795
BstDEI CTNAG 1 cut(s) 1038
BstEII GGTNACC 1 cut(s) 1280
BstF5I GGATG 1 cut(s) 907
BstFNI CGCG 1 cut(s) 1302
BstH2I RGCGCY 2 cut(s) 303, 1056
BstHHI GCGC 2 cut(s) 302, 1055
BstKTI GATC 6 cut(s) 142, 231, 1018, 1090, 1177, 1300
BstMBI GATC 6 cut(s) 139, 228, 1015, 1087, 1174, 1297
BstMWI GCNNNNNNNGC 4 cut(s) 246, 519, 674, 1436
BstNI CCWGG 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 778
BstPI GGTNACC 1 cut(s) 1280
BstSCI CCNGG 1 cut(s) 8
BstSFI CTRYAG 1 cut(s) 466
BstSLI GKGCMC 1 cut(s) 1411
BstSNI TACGTA 1 cut(s) 1005
BstUI CGCG 1 cut(s) 1302
BstV1I GCAGC 2 cut(s) 190, 734
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 907
BtsI GCAGTG 1 cut(s) 385
BtsIMutI CAGTG 1 cut(s) 385
BtuMI TCGCGA 1 cut(s) 1302
Cac8I GCNNGC 1 cut(s) 795
CciI TCATGA 1 cut(s) 1272
CfoI GCGC 2 cut(s) 302, 1055
Cfr10I RCCGGY 1 cut(s) 1277
Csp6I GTAC 3 cut(s) 993, 1006, 1313
CspAI ACCGGT 1 cut(s) 1277
CviAII CATG 5 cut(s) 208, 775, 814, 1273, 1417
CviQI GTAC 3 cut(s) 993, 1006, 1313
DdeI CTNAG 1 cut(s) 1038
DpnI GATC 6 cut(s) 141, 230, 1017, 1089, 1176, 1299
DpnII GATC 6 cut(s) 139, 228, 1015, 1087, 1174, 1297
DraIII CACNNNGTG 1 cut(s) 1376
Eam1104I CTCTTC 1 cut(s) 547
EarI CTCTTC 1 cut(s) 547
EciI GGCGGA 1 cut(s) 1167
Ecl136II GAGCTC 2 cut(s) 23, 172
Eco105I TACGTA 1 cut(s) 1005
Eco130I CCWWGG 1 cut(s) 344
Eco24I GRGCYC 2 cut(s) 25, 174
Eco53kI GAGCTC 2 cut(s) 23, 172
Eco57I CTGAAG 1 cut(s) 783
Eco91I GGTNACC 1 cut(s) 1280
EcoICRI GAGCTC 2 cut(s) 23, 172
EcoO65I GGTNACC 1 cut(s) 1280
EcoRI GAATTC 2 cut(s) 153, 968
EcoRII CCWGG 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 344
EcoT22I ATGCAT 1 cut(s) 909
EcoT38I GRGCYC 2 cut(s) 25, 174
ErhI CCWWGG 1 cut(s) 344
FaeI CATG 5 cut(s) 211, 778, 817, 1276, 1420
FaqI GGGAC 4 cut(s) 118, 233, 352, 998
FatI CATG 5 cut(s) 207, 774, 813, 1272, 1416
FauI CCCGC 2 cut(s) 183, 1062
FblI GTMKAC 1 cut(s) 870
Fnu4HI GCNGC 2 cut(s) 204, 723
FokI GGATG 1 cut(s) 894
FriOI GRGCYC 2 cut(s) 25, 174
Fsp4HI GCNGC 2 cut(s) 204, 723
FspBI CTAG 2 cut(s) 27, 771
GlaI GCGC 2 cut(s) 301, 1054
GluI GCNGC 2 cut(s) 204, 723
HaeII RGCGCY 2 cut(s) 303, 1056
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 150, 292, 1278
HhaI GCGC 2 cut(s) 302, 1055
Hin1II CATG 5 cut(s) 211, 778, 817, 1276, 1420
Hin6I GCGC 2 cut(s) 300, 1053
HinP1I GCGC 2 cut(s) 300, 1053
HpaII CCGG 3 cut(s) 150, 292, 1278
HphI GGTGA 5 cut(s) 139, 537, 866, 1362, 1374
Hpy166II GTNNAC 3 cut(s) 274, 871, 1409
Hpy188III TCNNGA 6 cut(s) 18, 191, 218, 603, 1273, 1301
Hpy8I GTNNAC 3 cut(s) 274, 871, 1409
HpyAV CCTTC 3 cut(s) 415, 1196, 1434
HpyCH4III ACNGT 4 cut(s) 593, 928, 1114, 1286
HpyCH4IV ACGT 4 cut(s) 107, 621, 1004, 1130
HpyCH4V TGCA 8 cut(s) 316, 507, 628, 907, 977, 1184, 1409, 1430
HpyF10VI GCNNNNNNNGC 4 cut(s) 246, 519, 674, 1436
HpyF3I CTNAG 1 cut(s) 1038
HpySE526I ACGT 4 cut(s) 107, 621, 1004, 1130
Hsp92II CATG 5 cut(s) 211, 778, 817, 1276, 1420
HspAI GCGC 2 cut(s) 300, 1053
KpnI GGTACC 1 cut(s) 996
Kzo9I GATC 6 cut(s) 139, 228, 1015, 1087, 1174, 1297
LguI GCTCTTC 1 cut(s) 547
LmnI GCTCC 5 cut(s) 28, 87, 137, 177, 730
Lsp1109I GCAGC 2 cut(s) 190, 734
LweI GCATC 2 cut(s) 634, 916
MaeI CTAG 2 cut(s) 27, 771
MaeII ACGT 4 cut(s) 107, 621, 1004, 1130
MaeIII GTNAC 8 cut(s) 54, 92, 145, 563, 928, 955, 1072, 1280
MalI GATC 6 cut(s) 141, 230, 1017, 1089, 1176, 1299
MbiI CCGCTC 1 cut(s) 132
MboI GATC 6 cut(s) 139, 228, 1015, 1087, 1174, 1297
MboII GAAGA 4 cut(s) 534, 591, 1082, 1256
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 3 cut(s) 25, 174, 1411
MluCI AATT 8 cut(s) 153, 825, 968, 978, 1081, 1135, 1388, 1431
MlyI GAGTC 6 cut(s) 29, 196, 205, 334, 980, 1337
MmeI TCCRAC 4 cut(s) 65, 925, 935, 1301
Mph1103I ATGCAT 1 cut(s) 909
MseI TTAA 5 cut(s) 429, 573, 713, 1338, 1447
MslI CAYNNNNRTG 1 cut(s) 1164
MspI CCGG 3 cut(s) 150, 292, 1278
MspR9I CCNGG 1 cut(s) 10
MvaI CCWGG 1 cut(s) 10
MvnI CGCG 1 cut(s) 1302
MwoI GCNNNNNNNGC 4 cut(s) 246, 519, 674, 1436
NdeII GATC 6 cut(s) 139, 228, 1015, 1087, 1174, 1297
NlaIII CATG 5 cut(s) 211, 778, 817, 1276, 1420
NlaIV GGNNCC 4 cut(s) 501, 669, 994, 1422
NmeAIII GCCGAG 1 cut(s) 225
NmuCI GTSAC 1 cut(s) 145
NruI TCGCGA 1 cut(s) 1302
NsiI ATGCAT 1 cut(s) 909
NspI RCATGY 1 cut(s) 778
PagI TCATGA 1 cut(s) 1272
PciSI GCTCTTC 1 cut(s) 547
PfeI GAWTC 5 cut(s) 606, 694, 803, 843, 1379
PflFI GACNNNGTC 1 cut(s) 1327
PfoI TCCNGGA 1 cut(s) 8
PinAI ACCGGT 1 cut(s) 1277
PkrI GCNGC 2 cut(s) 205, 724
PleI GAGTC 6 cut(s) 29, 195, 205, 334, 980, 1336
PpsI GAGTC 6 cut(s) 29, 195, 205, 334, 980, 1336
Ppu21I YACGTR 1 cut(s) 1005
PsiI TTATAA 1 cut(s) 1164
Psp124BI GAGCTC 2 cut(s) 25, 174
Psp1406I AACGTT 1 cut(s) 1130
Psp6I CCWGG 1 cut(s) 8
PspEI GGTNACC 1 cut(s) 1280
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 4 cut(s) 501, 669, 994, 1422
PsrI GAACNNNNNNTAC 2 cut(s) 606, 638
PsuI RGATCY 1 cut(s) 139
PsyI GACNNNGTC 1 cut(s) 1327
RruI TCGCGA 1 cut(s) 1302
RsaI GTAC 3 cut(s) 994, 1007, 1314
RsaNI GTAC 3 cut(s) 993, 1006, 1313
RseI CAYNNNNRTG 1 cut(s) 1164
SacI GAGCTC 2 cut(s) 25, 174
SapI GCTCTTC 1 cut(s) 547
SaqAI TTAA 5 cut(s) 429, 573, 713, 1338, 1447
SatI GCNGC 2 cut(s) 204, 723
Sau3AI GATC 6 cut(s) 139, 228, 1015, 1087, 1174, 1297
SchI GAGTC 6 cut(s) 29, 196, 205, 334, 980, 1337
ScrFI CCNGG 1 cut(s) 10
SduI GDGCHC 3 cut(s) 25, 174, 1411
SfaNI GCATC 2 cut(s) 634, 916
SfcI CTRYAG 1 cut(s) 466
SmiMI CAYNNNNRTG 1 cut(s) 1164
SnaBI TACGTA 1 cut(s) 1005
Sse9I AATT 8 cut(s) 153, 825, 968, 978, 1081, 1135, 1388, 1431
SsiI CCGC 5 cut(s) 130, 176, 260, 1069, 1152
SspI AATATT 2 cut(s) 197, 1103
SspMI CTAG 2 cut(s) 27, 771
SstI GAGCTC 2 cut(s) 25, 174
StyD4I CCNGG 1 cut(s) 8
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 4 cut(s) 593, 928, 1114, 1286
TaiI ACGT 4 cut(s) 110, 624, 1007, 1133
TaqI TCGA 1 cut(s) 663
TasI AATT 8 cut(s) 153, 825, 968, 978, 1081, 1135, 1388, 1431
TfiI GAWTC 5 cut(s) 606, 694, 803, 843, 1379
Tru1I TTAA 5 cut(s) 429, 573, 713, 1338, 1447
Tru9I TTAA 5 cut(s) 429, 573, 713, 1338, 1447
TscAI CASTG 1 cut(s) 385
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 2 cut(s) 203, 722
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 4 cut(s) 585, 1160, 1261, 1263
TspRI CASTG 1 cut(s) 385
Tth111I GACNNNGTC 1 cut(s) 1327
VneI GTGCAC 1 cut(s) 1407
XapI RAATTY 3 cut(s) 153, 968, 1135
XceI RCATGY 1 cut(s) 778
XmiI GTMKAC 1 cut(s) 870
XspI CTAG 2 cut(s) 27, 771
Zsp2I ATGCAT 1 cut(s) 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.