Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001552

Physical Location & Seq

Genomic Coordinates Reverse (-)

37656929 .. 37665992

Gene Structure 9064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG278400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAGTCGCAGACCTTTTGGCAGGAAATGCCCAATGTCATCATATGCAAAAAGGTGTGGTAGGAATCAAACTGGTATATTGTTAAGTGGGGCAGCTCCCAATGGTCTATTAGGGCTTGGTATGGATGATGTATCCATTCCTAGCATGTTAGCAAAACAGGGGCTTGCTTCAAATTCTTTTTCCATGTGTTTTGGAGTTAACGGAAGTGGTAGGATCAGATTTGGTGATAATGGAAGTGTAGACCAACCAGAAACACCATTCTATGTCAGAGATAAATATCCAACTTACAACATTACGGTTACTCAAATAGCCGTTGGAAAAAGTGTTGCTGATCTTGAATTCTATGCAATTTGGGACTCTGGTACCTCATTTACGTACCCAAATGATCCAGCTTACACCCATATTTCTAAGAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0043170 GO:0044238 GO:0044425 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

139

Amino Acids

15.1

Weight (kDa)

9.07

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	18 - 76	9.4e-09	Xylanase inhibitor N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17760 AT3G51330 AT3G51330 AT3G51330 AT3G51340 AT3G51340 AT3G51340 AT3G51340 AT3G51350
fragaria_vesca	FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190
malus_domestica	MD02G1124400.v1.1 MD02G1124500.v1.1 MD15G1238500.v1.1
prunus_persica	Prupe.7G173900_v2.0.a1
pyrus_communis	pycom02g09720
rosa_chinensis	RchiOBHm_Chr2g0098521 RchiOBHm_Chr2g0098531 RchiOBHm_Chr2g0098551 RchiOBHm_Chr2g0098601 RchiOBHm_Chr5g0032521
rosa_laevigata	RLG00000016804 RLG00000016805 RLG00000016809 RLG00000016811 RLG00000036276
rosa_roxburghii	Rroxscaffold_2G00143860 Rroxscaffold_2G00143910
rosa_rugosa	Rorug02G0073700
rosa_samantha	Rh2AG121000 Rh2AG121200 Rh2AG473700 Rh2BG124100 Rh2BG124200 Rh2BG124400 Rh2BG124600 Rh2BG124800 Rh2CG125600 Rh2CG125700 Rh2CG459400 Rh2DG126200 Rh2DG126700 Rh2DG126900 Rh5AG278400
rosa_wichuraiana	Rw0G004110 Rw2G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	362
AccB1I	GGYRCC	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	240
AclWI	GGATC	2 cut(s)	221, 380
AcsI	RAATTY	2 cut(s)	172, 338
AfaI	GTAC	2 cut(s)	364, 377
AgsI	TTSAA	2 cut(s)	171, 338
AluBI	AGCT	2 cut(s)	95, 392
AluI	AGCT	2 cut(s)	95, 392
AlwI	GGATC	2 cut(s)	221, 380
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	2 cut(s)	172, 338
Asp718I	GGTACC	1 cut(s)	362
AsuHPI	GGTGA	1 cut(s)	236
BaeI	ACNNNNGTAYC	2 cut(s)	346, 379
BanI	GGYRCC	1 cut(s)	362
BbvI	GCAGC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	296
BciVI	GTATCC	1 cut(s)	142
BfaI	CTAG	1 cut(s)	141
BfuI	GTATCC	1 cut(s)	142
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	364
BsaAI	YACGTR	1 cut(s)	375
BsaBI	GATNNNNATC	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	76
Bse8I	GATNNNNATC	1 cut(s)	276
BseGI	GGATG	1 cut(s)	130
BseJI	GATNNNNATC	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	104
BshNI	GGYRCC	1 cut(s)	362
BslFI	GGGAC	1 cut(s)	368
BsmFI	GGGAC	1 cut(s)	368
Bsp143I	GATC	3 cut(s)	213, 331, 385
BspLI	GGNNCC	1 cut(s)	364
BspPI	GGATC	2 cut(s)	221, 380
BspT107I	GGYRCC	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	76
BssMI	GATC	3 cut(s)	213, 331, 385
Bst4CI	ACNGT	1 cut(s)	298
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstBAI	YACGTR	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	1 cut(s)	408
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	3 cut(s)	216, 334, 388
BstMBI	GATC	3 cut(s)	213, 331, 385
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BstNSI	RCATGY	1 cut(s)	148
BstSNI	TACGTA	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	104
BsuI	GTATCC	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	165
Csp6I	GTAC	2 cut(s)	363, 376
CviAII	CATG	2 cut(s)	145, 184
CviJI	RGCY	5 cut(s)	95, 115, 163, 311, 392
CviKI_1	RGCY	5 cut(s)	95, 115, 163, 311, 392
CviQI	GTAC	2 cut(s)	363, 376
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	3 cut(s)	215, 333, 387
DpnII	GATC	3 cut(s)	213, 331, 385
Eco105I	TACGTA	1 cut(s)	375
EcoRI	GAATTC	1 cut(s)	338
FaeI	CATG	2 cut(s)	148, 187
FaiI	YATR	9 cut(s)	43, 45, 77, 122, 146, 185, 264, 345, 402
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	2 cut(s)	144, 183
FauNDI	CATATG	1 cut(s)	43
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	1 cut(s)	141
GluI	GCNGC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	148, 187
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	3 cut(s)	4, 64, 356
HpaI	GTTAAC	1 cut(s)	199
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	2 cut(s)	199, 241
Hpy188I	TCNGA	2 cut(s)	218, 269
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	2 cut(s)	199, 241
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	2 cut(s)	47, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
HpyF3I	CTNAG	1 cut(s)	408
HpySE526I	ACGT	1 cut(s)	374
Hsp92II	CATG	2 cut(s)	148, 187
KpnI	GGTACC	1 cut(s)	366
KspAI	GTTAAC	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	213, 331, 385
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	6 cut(s)	7, 57, 143, 261, 345, 402
Lsp1109I	GCAGC	1 cut(s)	104
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	1 cut(s)	374
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	3 cut(s)	215, 333, 387
MboI	GATC	3 cut(s)	213, 331, 385
MluCI	AATT	3 cut(s)	172, 338, 348
MlyI	GAGTC	2 cut(s)	13, 350
MmeI	TCCRAC	2 cut(s)	295, 305
MnlI	CCTC	1 cut(s)	376
MseI	TTAA	2 cut(s)	83, 198
MwoI	GCNNNNNNNGC	1 cut(s)	27
NdeI	CATATG	1 cut(s)	43
NdeII	GATC	3 cut(s)	213, 331, 385
NlaIII	CATG	2 cut(s)	148, 187
NlaIV	GGNNCC	1 cut(s)	364
NspI	RCATGY	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	94
PleI	GAGTC	2 cut(s)	12, 350
PpsI	GAGTC	2 cut(s)	12, 350
Ppu21I	YACGTR	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	364
RsaI	GTAC	2 cut(s)	364, 377
RsaNI	GTAC	2 cut(s)	363, 376
SaqAI	TTAA	2 cut(s)	83, 198
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	3 cut(s)	213, 331, 385
SchI	GAGTC	2 cut(s)	13, 350
SetI	ASST	6 cut(s)	16, 56, 97, 368, 377, 394
SnaBI	TACGTA	1 cut(s)	375
Sse9I	AATT	3 cut(s)	172, 338, 348
SspMI	CTAG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	1 cut(s)	377
TasI	AATT	3 cut(s)	172, 338, 348
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	2 cut(s)	83, 198
Tru9I	TTAA	2 cut(s)	83, 198
TseI	GCWGC	1 cut(s)	92
TspGWI	ACGGA	1 cut(s)	216
XapI	RAATTY	2 cut(s)	172, 338
XceI	RCATGY	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	240
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.