Belongs to the peptidase A1 family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G17760 AT3G51330 AT3G51330 AT3G51330 AT3G51340 AT3G51340 AT3G51340 AT3G51340 AT3G51350 |
| fragaria_vesca | FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 |
| malus_domestica | MD02G1124400.v1.1 MD02G1124500.v1.1 MD15G1238500.v1.1 |
| prunus_persica | Prupe.7G173900_v2.0.a1 |
| pyrus_communis | pycom02g09720 |
| rosa_chinensis | RchiOBHm_Chr2g0098521 RchiOBHm_Chr2g0098531 RchiOBHm_Chr2g0098551 RchiOBHm_Chr2g0098601 RchiOBHm_Chr5g0032521 |
| rosa_laevigata | RLG00000016804 RLG00000016805 RLG00000016809 RLG00000016811 RLG00000036276 |
| rosa_roxburghii | Rroxscaffold_2G00143860 Rroxscaffold_2G00143910 |
| rosa_rugosa | Rorug02G0073700 |
| rosa_samantha | Rh2AG121000 Rh2AG121200 Rh2AG473700 Rh2BG124100 Rh2BG124200 Rh2BG124400 Rh2BG124600 Rh2BG124800 Rh2CG125600 Rh2CG125700 Rh2CG459400 Rh2DG126200 Rh2DG126700 Rh2DG126900 Rh5AG278400 |
| rosa_wichuraiana | Rw0G004110 Rw2G009490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 3 cut(s) | 296, 687, 1554 |
| AclWI | GGATC | 6 cut(s) | 386, 399, 842, 1277, 1436, 1732 |
| AcsI | RAATTY | 3 cut(s) | 719, 1066, 1235 |
| AcuI | CTGAAG | 1 cut(s) | 792 |
| AcyI | GRCGYC | 3 cut(s) | 152, 521, 605 |
| AfaI | GTAC | 4 cut(s) | 362, 449, 927, 1702 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 348, 388, 434, 1695 |
| AflIII | ACRYGT | 2 cut(s) | 709, 1455 |
| AgeI | ACCGGT | 1 cut(s) | 381 |
| AgsI | TTSAA | 7 cut(s) | 725, 1066, 1156, 1315, 1367, 1414, 1747 |
| AhlI | ACTAGT | 1 cut(s) | 1447 |
| AjiI | CACGTC | 1 cut(s) | 710 |
| AjnI | CCWGG | 1 cut(s) | 1491 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1565, 1597 |
| AluBI | AGCT | 8 cut(s) | 76, 127, 275, 424, 678, 697, 1263, 1289 |
| AluI | AGCT | 8 cut(s) | 76, 127, 275, 424, 678, 697, 1263, 1289 |
| Alw21I | GWGCWC | 1 cut(s) | 614 |
| Alw26I | GTCTC | 3 cut(s) | 262, 465, 848 |
| AlwI | GGATC | 6 cut(s) | 386, 399, 842, 1277, 1436, 1732 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 130, 678 |
| Ama87I | CYCGRG | 1 cut(s) | 353 |
| AoxI | GGCC | 5 cut(s) | 462, 487, 1054, 1135, 1686 |
| ApeKI | GCWGC | 8 cut(s) | 127, 272, 424, 642, 672, 675, 678, 801 |
| ApoI | RAATTY | 3 cut(s) | 719, 1066, 1235 |
| AsiGI | ACCGGT | 1 cut(s) | 381 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1754 |
| AspLEI | GCGC | 3 cut(s) | 298, 443, 806 |
| AspS9I | GGNCC | 6 cut(s) | 20, 339, 463, 487, 958, 1054 |
| AsuC2I | CCSGG | 3 cut(s) | 82, 1682, 1722 |
| AsuHPI | GGTGA | 5 cut(s) | 830, 1130, 1411, 1728, 1762 |
| AsuII | TTCGAA | 1 cut(s) | 534 |
| AvaI | CYCGRG | 1 cut(s) | 353 |
| AvaII | GGWCC | 3 cut(s) | 20, 339, 958 |
| BamHI | GGATCC | 1 cut(s) | 391 |
| BanII | GRGCYC | 1 cut(s) | 354 |
| Bbv12I | GWGCWC | 1 cut(s) | 614 |
| BbvI | GCAGC | 8 cut(s) | 114, 284, 411, 654, 665, 684, 687, 788 |
| BccI | CCATC | 5 cut(s) | 98, 501, 1088, 1570, 1651 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1223, 1257 |
| BciT130I | CCWGG | 1 cut(s) | 1493 |
| BciVI | GTATCC | 1 cut(s) | 1036 |
| BclI | TGATCA | 1 cut(s) | 51 |
| BcnI | CCSGG | 3 cut(s) | 82, 1682, 1722 |
| BcoDI | GTCTC | 3 cut(s) | 262, 465, 848 |
| BcuI | ACTAGT | 1 cut(s) | 1447 |
| BfaI | CTAG | 4 cut(s) | 5, 249, 1035, 1448 |
| BfmI | CTRYAG | 1 cut(s) | 730 |
| BfoI | RGCGCY | 1 cut(s) | 444 |
| BfuI | GTATCC | 1 cut(s) | 1036 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 269, 461 |
| BmcAI | AGTACT | 1 cut(s) | 449 |
| Bme1390I | CCNGG | 4 cut(s) | 82, 1493, 1682, 1722 |
| Bme18I | GGWCC | 3 cut(s) | 20, 339, 958 |
| BmeT110I | CYCGRG | 1 cut(s) | 353 |
| BmgBI | CACGTC | 1 cut(s) | 710 |
| BmgT120I | GGNCC | 6 cut(s) | 20, 339, 463, 487, 958, 1054 |
| BmiI | GGNNCC | 5 cut(s) | 22, 393, 415, 488, 990 |
| BmrFI | CCNGG | 4 cut(s) | 82, 1493, 1682, 1722 |
| BmrI | ACTGGG | 1 cut(s) | 876 |
| BmsI | GCATC | 3 cut(s) | 307, 898, 1348 |
| BmuI | ACTGGG | 1 cut(s) | 876 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1383 |
| BpmI | CTGGAG | 1 cut(s) | 107 |
| Bpu14I | TTCGAA | 1 cut(s) | 534 |
| BpuEI | CTTGAG | 1 cut(s) | 56 |
| BpuMI | CCSGG | 3 cut(s) | 82, 1682, 1722 |
| BsaAI | YACGTR | 1 cut(s) | 552 |
| BsaHI | GRCGYC | 3 cut(s) | 152, 521, 605 |
| BsaI | GGTCTC | 2 cut(s) | 465, 848 |
| BsaJI | CCNNGG | 4 cut(s) | 264, 685, 1132, 1492 |
| BsaWI | WCCGGW | 1 cut(s) | 381 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 272, 302 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 348, 388, 434, 1695 |
| Bse118I | RCCGGY | 1 cut(s) | 381 |
| Bse1I | ACTGG | 3 cut(s) | 871, 970, 1168 |
| BseBI | CCWGG | 1 cut(s) | 1493 |
| BseDI | CCNNGG | 4 cut(s) | 264, 685, 1132, 1492 |
| BseGI | GGATG | 5 cut(s) | 889, 1024, 1339, 1474, 1709 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 348, 388, 434, 1695 |
| BseMII | CTCAG | 2 cut(s) | 273, 1296 |
| BseNI | ACTGG | 3 cut(s) | 871, 970, 1168 |
| BseRI | GAGGAG | 1 cut(s) | 1427 |
| BseXI | GCAGC | 8 cut(s) | 114, 284, 411, 654, 665, 684, 687, 788 |
| Bsh1236I | CGCG | 3 cut(s) | 296, 687, 1554 |
| BshFI | GGCC | 5 cut(s) | 464, 489, 1056, 1137, 1688 |
| BshTI | ACCGGT | 1 cut(s) | 381 |
| BsiHKAI | GWGCWC | 1 cut(s) | 614 |
| BsiHKCI | CYCGRG | 1 cut(s) | 353 |
| BsiSI | CCGG | 5 cut(s) | 82, 382, 428, 1682, 1721 |
| BsiWI | CGTACG | 1 cut(s) | 360 |
| BslFI | GGGAC | 2 cut(s) | 370, 616 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 348, 388, 434, 1695 |
| BsmAI | GTCTC | 3 cut(s) | 262, 465, 848 |
| BsmBI | CGTCTC | 1 cut(s) | 262 |
| BsmFI | GGGAC | 2 cut(s) | 370, 616 |
| BsmI | GAATGC | 1 cut(s) | 1766 |
| BsnI | GGCC | 5 cut(s) | 464, 489, 1056, 1137, 1688 |
| Bso31I | GGTCTC | 2 cut(s) | 465, 848 |
| BsoBI | CYCGRG | 1 cut(s) | 353 |
| Bsp119I | TTCGAA | 1 cut(s) | 534 |
| Bsp1286I | GDGCHC | 2 cut(s) | 354, 614 |
| Bsp143I | GATC | 9 cut(s) | 51, 391, 511, 834, 1228, 1282, 1441, 1635, 1724 |
| Bsp19I | CCATGG | 1 cut(s) | 264 |
| BspANI | GGCC | 5 cut(s) | 464, 489, 1056, 1137, 1688 |
| BspCNI | CTCAG | 2 cut(s) | 272, 1297 |
| BspFNI | CGCG | 3 cut(s) | 296, 687, 1554 |
| BspHI | TCATGA | 2 cut(s) | 1159, 1539 |
| BspLI | GGNNCC | 5 cut(s) | 22, 393, 415, 488, 990 |
| BspPI | GGATC | 6 cut(s) | 386, 399, 842, 1277, 1436, 1732 |
| BspT104I | TTCGAA | 1 cut(s) | 534 |
| BspTNI | GGTCTC | 2 cut(s) | 465, 848 |
| BsrFI | RCCGGY | 1 cut(s) | 381 |
| BsrI | ACTGG | 3 cut(s) | 871, 970, 1168 |
| BssAI | RCCGGY | 1 cut(s) | 381 |
| BssECI | CCNNGG | 4 cut(s) | 264, 685, 1132, 1492 |
| BssMI | GATC | 9 cut(s) | 51, 391, 511, 834, 1228, 1282, 1441, 1635, 1724 |
| BssNI | GRCGYC | 3 cut(s) | 152, 521, 605 |
| BssT1I | CCWWGG | 2 cut(s) | 264, 1132 |
| Bst2UI | CCWGG | 1 cut(s) | 1493 |
| Bst4CI | ACNGT | 5 cut(s) | 49, 284, 983, 1568, 1624 |
| BstACI | GRCGYC | 3 cut(s) | 152, 521, 605 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 678, 938 |
| BstBAI | YACGTR | 1 cut(s) | 552 |
| BstBI | TTCGAA | 1 cut(s) | 534 |
| BstC8I | GCNNGC | 2 cut(s) | 32, 528 |
| BstDEI | CTNAG | 2 cut(s) | 259, 1305 |
| BstDSI | CCRYGG | 2 cut(s) | 264, 685 |
| BstF5I | GGATG | 5 cut(s) | 889, 1024, 1339, 1474, 1709 |
| BstFNI | CGCG | 3 cut(s) | 296, 687, 1554 |
| BstH2I | RGCGCY | 1 cut(s) | 444 |
| BstHHI | GCGC | 3 cut(s) | 298, 443, 806 |
| BstKTI | GATC | 9 cut(s) | 54, 394, 514, 837, 1231, 1285, 1444, 1638, 1727 |
| BstMAI | GTCTC | 3 cut(s) | 262, 465, 848 |
| BstMBI | GATC | 9 cut(s) | 51, 391, 511, 834, 1228, 1282, 1441, 1635, 1724 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 269, 461, 658, 678, 684, 687, 938, 1205 |
| BstNI | CCWGG | 1 cut(s) | 1493 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1383 |
| BstSCI | CCNGG | 4 cut(s) | 80, 1491, 1680, 1720 |
| BstSFI | CTRYAG | 1 cut(s) | 730 |
| BstUI | CGCG | 3 cut(s) | 296, 687, 1554 |
| BstV1I | GCAGC | 8 cut(s) | 114, 284, 411, 654, 665, 684, 687, 788 |
| BstX2I | RGATCY | 1 cut(s) | 391 |
| BstYI | RGATCY | 1 cut(s) | 391 |
| BsuI | GTATCC | 1 cut(s) | 1036 |
| BsuRI | GGCC | 5 cut(s) | 464, 489, 1056, 1137, 1688 |
| BtgI | CCRYGG | 2 cut(s) | 264, 685 |
| BtrI | CACGTC | 1 cut(s) | 710 |
| BtsCI | GGATG | 5 cut(s) | 889, 1024, 1339, 1474, 1709 |
| BtsIMutI | CAGTG | 1 cut(s) | 54 |
| Cac8I | GCNNGC | 2 cut(s) | 32, 528 |
| CaiI | CAGNNNCTG | 2 cut(s) | 130, 678 |
| CciI | TCATGA | 2 cut(s) | 1159, 1539 |
| CfoI | GCGC | 3 cut(s) | 298, 443, 806 |
| Cfr10I | RCCGGY | 1 cut(s) | 381 |
| Cfr13I | GGNCC | 6 cut(s) | 20, 339, 463, 487, 958, 1054 |
| Cfr42I | CCGCGG | 1 cut(s) | 688 |
| CseI | GACGC | 5 cut(s) | 141, 529, 613, 670, 1663 |
| Csp6I | GTAC | 4 cut(s) | 361, 448, 926, 1701 |
| CspAI | ACCGGT | 1 cut(s) | 381 |
| CviAII | CATG | 6 cut(s) | 207, 265, 663, 1078, 1160, 1540 |
| CviQI | GTAC | 4 cut(s) | 361, 448, 926, 1701 |
| DdeI | CTNAG | 2 cut(s) | 259, 1305 |
| DpnI | GATC | 9 cut(s) | 53, 393, 513, 836, 1230, 1284, 1443, 1637, 1726 |
| DpnII | GATC | 9 cut(s) | 51, 391, 511, 834, 1228, 1282, 1441, 1635, 1724 |
| EciI | GGCGGA | 1 cut(s) | 280 |
| Eco130I | CCWWGG | 2 cut(s) | 264, 1132 |
| Eco24I | GRGCYC | 1 cut(s) | 354 |
| Eco31I | GGTCTC | 2 cut(s) | 465, 848 |
| Eco32I | GATATC | 1 cut(s) | 373 |
| Eco47I | GGWCC | 3 cut(s) | 20, 339, 958 |
| Eco57I | CTGAAG | 1 cut(s) | 792 |
| Eco88I | CYCGRG | 1 cut(s) | 353 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1054 |
| EcoRI | GAATTC | 2 cut(s) | 1066, 1235 |
| EcoRII | CCWGG | 1 cut(s) | 1491 |
| EcoRV | GATATC | 1 cut(s) | 373 |
| EcoT14I | CCWWGG | 2 cut(s) | 264, 1132 |
| EcoT38I | GRGCYC | 1 cut(s) | 354 |
| ErhI | CCWWGG | 2 cut(s) | 264, 1132 |
| Esp3I | CGTCTC | 1 cut(s) | 262 |
| FaeI | CATG | 6 cut(s) | 210, 268, 666, 1081, 1163, 1543 |
| FaqI | GGGAC | 2 cut(s) | 370, 616 |
| FatI | CATG | 6 cut(s) | 206, 264, 662, 1077, 1159, 1539 |
| FauI | CCCGC | 1 cut(s) | 39 |
| FbaI | TGATCA | 1 cut(s) | 51 |
| FokI | GGATG | 5 cut(s) | 896, 1031, 1326, 1481, 1696 |
| FriOI | GRGCYC | 1 cut(s) | 354 |
| FspBI | CTAG | 4 cut(s) | 5, 249, 1035, 1448 |
| GlaI | GCGC | 3 cut(s) | 297, 442, 805 |
| GsuI | CTGGAG | 1 cut(s) | 107 |
| HaeII | RGCGCY | 1 cut(s) | 444 |
| HaeIII | GGCC | 5 cut(s) | 464, 489, 1056, 1137, 1688 |
| HapII | CCGG | 5 cut(s) | 82, 382, 428, 1682, 1721 |
| HgaI | GACGC | 5 cut(s) | 141, 529, 613, 670, 1663 |
| HhaI | GCGC | 3 cut(s) | 298, 443, 806 |
| Hin1I | GRCGYC | 3 cut(s) | 152, 521, 605 |
| Hin1II | CATG | 6 cut(s) | 210, 268, 666, 1081, 1163, 1543 |
| Hin6I | GCGC | 3 cut(s) | 296, 441, 804 |
| HinP1I | GCGC | 3 cut(s) | 296, 441, 804 |
| HincII | GTYRAC | 1 cut(s) | 1678 |
| HindII | GTYRAC | 1 cut(s) | 1678 |
| HindIII | AAGCTT | 1 cut(s) | 74 |
| HinfI | GANTC | 8 cut(s) | 252, 481, 1107, 1253, 1349, 1472, 1497, 1595 |
| HpaII | CCGG | 5 cut(s) | 82, 382, 428, 1682, 1721 |
| HphI | GGTGA | 5 cut(s) | 830, 1130, 1411, 1728, 1762 |
| Hpy166II | GTNNAC | 4 cut(s) | 788, 1402, 1453, 1678 |
| Hpy188III | TCNNGA | 6 cut(s) | 249, 355, 700, 1160, 1232, 1540 |
| Hpy8I | GTNNAC | 4 cut(s) | 788, 1402, 1453, 1678 |
| Hpy99I | CGWCG | 4 cut(s) | 157, 512, 523, 908 |
| HpyAV | CCTTC | 3 cut(s) | 142, 427, 1585 |
| HpyCH4III | ACNGT | 5 cut(s) | 49, 284, 983, 1568, 1624 |
| HpyCH4IV | ACGT | 6 cut(s) | 134, 359, 551, 709, 743, 1455 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 269, 461, 658, 678, 684, 687, 938, 1205 |
| HpyF3I | CTNAG | 2 cut(s) | 259, 1305 |
| HpySE526I | ACGT | 6 cut(s) | 134, 359, 551, 709, 743, 1455 |
| Hsp92I | GRCGYC | 3 cut(s) | 152, 521, 605 |
| Hsp92II | CATG | 6 cut(s) | 210, 268, 666, 1081, 1163, 1543 |
| HspAI | GCGC | 3 cut(s) | 296, 441, 804 |
| Ksp22I | TGATCA | 1 cut(s) | 51 |
| KspI | CCGCGG | 1 cut(s) | 688 |
| Kzo9I | GATC | 9 cut(s) | 51, 391, 511, 834, 1228, 1282, 1441, 1635, 1724 |
| LmnI | GCTCC | 2 cut(s) | 702, 994 |
| Lsp1109I | GCAGC | 8 cut(s) | 114, 284, 411, 654, 665, 684, 687, 788 |
| LweI | GCATC | 3 cut(s) | 307, 898, 1348 |
| MaeI | CTAG | 4 cut(s) | 5, 249, 1035, 1448 |
| MaeII | ACGT | 6 cut(s) | 134, 359, 551, 709, 743, 1455 |
| MaeIII | GTNAC | 3 cut(s) | 1222, 1604, 1624 |
| MalI | GATC | 9 cut(s) | 53, 393, 513, 836, 1230, 1284, 1443, 1637, 1726 |
| MboI | GATC | 9 cut(s) | 51, 391, 511, 834, 1228, 1282, 1441, 1635, 1724 |
| MboII | GAAGA | 4 cut(s) | 184, 1585, 1759, 1769 |
| MfeI | CAATTG | 1 cut(s) | 1600 |
| MflI | RGATCY | 1 cut(s) | 391 |
| MhlI | GDGCHC | 2 cut(s) | 354, 614 |
| MlyI | GAGTC | 3 cut(s) | 261, 1247, 1506 |
| MmeI | TCCRAC | 3 cut(s) | 1202, 1568, 1679 |
| MnlI | CCTC | 8 cut(s) | 221, 298, 868, 874, 1448, 1609, 1672, 1678 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1754 |
| MseI | TTAA | 3 cut(s) | 60, 1326, 1518 |
| MspA1I | CMGCKG | 3 cut(s) | 127, 678, 687 |
| MspI | CCGG | 5 cut(s) | 82, 382, 428, 1682, 1721 |
| MspR9I | CCNGG | 4 cut(s) | 82, 1493, 1682, 1722 |
| MunI | CAATTG | 1 cut(s) | 1600 |
| Mva1269I | GAATGC | 1 cut(s) | 1766 |
| MvaI | CCWGG | 1 cut(s) | 1493 |
| MvnI | CGCG | 3 cut(s) | 296, 687, 1554 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 269, 461, 658, 678, 684, 687, 938, 1205 |
| NciI | CCSGG | 3 cut(s) | 82, 1682, 1722 |
| NcoI | CCATGG | 1 cut(s) | 264 |
| NdeII | GATC | 9 cut(s) | 51, 391, 511, 834, 1228, 1282, 1441, 1635, 1724 |
| NlaIII | CATG | 6 cut(s) | 210, 268, 666, 1081, 1163, 1543 |
| NlaIV | GGNNCC | 5 cut(s) | 22, 393, 415, 488, 990 |
| NmeAIII | GCCGAG | 2 cut(s) | 469, 633 |
| NmuCI | GTSAC | 1 cut(s) | 1624 |
| NspV | TTCGAA | 1 cut(s) | 534 |
| PagI | TCATGA | 2 cut(s) | 1159, 1539 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 749, 1652 |
| PctI | GAATGC | 1 cut(s) | 1766 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1754 |
| PfeI | GAWTC | 5 cut(s) | 481, 1107, 1349, 1472, 1595 |
| Pfl23II | CGTACG | 1 cut(s) | 360 |
| PinAI | ACCGGT | 1 cut(s) | 381 |
| PleI | GAGTC | 3 cut(s) | 260, 1247, 1505 |
| PpsI | GAGTC | 3 cut(s) | 260, 1247, 1505 |
| Ppu21I | YACGTR | 1 cut(s) | 552 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1383 |
| Psp6I | CCWGG | 1 cut(s) | 1491 |
| PspGI | CCWGG | 1 cut(s) | 1491 |
| PspLI | CGTACG | 1 cut(s) | 360 |
| PspN4I | GGNNCC | 5 cut(s) | 22, 393, 415, 488, 990 |
| PspPI | GGNCC | 6 cut(s) | 20, 339, 463, 487, 958, 1054 |
| PstNI | CAGNNNCTG | 2 cut(s) | 130, 678 |
| PsuI | RGATCY | 1 cut(s) | 391 |
| PvuII | CAGCTG | 2 cut(s) | 127, 678 |
| RsaI | GTAC | 4 cut(s) | 362, 449, 927, 1702 |
| RsaNI | GTAC | 4 cut(s) | 361, 448, 926, 1701 |
| SacII | CCGCGG | 1 cut(s) | 688 |
| SaqAI | TTAA | 3 cut(s) | 60, 1326, 1518 |
| Sau3AI | GATC | 9 cut(s) | 51, 391, 511, 834, 1228, 1282, 1441, 1635, 1724 |
| Sau96I | GGNCC | 6 cut(s) | 20, 339, 463, 487, 958, 1054 |
| ScaI | AGTACT | 1 cut(s) | 449 |
| SchI | GAGTC | 3 cut(s) | 261, 1247, 1506 |
| ScrFI | CCNGG | 4 cut(s) | 82, 1493, 1682, 1722 |
| SduI | GDGCHC | 2 cut(s) | 354, 614 |
| SfaNI | GCATC | 3 cut(s) | 307, 898, 1348 |
| SfcI | CTRYAG | 1 cut(s) | 730 |
| Sfr303I | CCGCGG | 1 cut(s) | 688 |
| SfuI | TTCGAA | 1 cut(s) | 534 |
| SgrBI | CCGCGG | 1 cut(s) | 688 |
| SinI | GGWCC | 3 cut(s) | 20, 339, 958 |
| SmlI | CTYRAG | 1 cut(s) | 71 |
| SmoI | CTYRAG | 1 cut(s) | 71 |
| SpeI | ACTAGT | 1 cut(s) | 1447 |
| SspI | AATATT | 1 cut(s) | 1370 |
| SspMI | CTAG | 4 cut(s) | 5, 249, 1035, 1448 |
| StyD4I | CCNGG | 4 cut(s) | 80, 1491, 1680, 1720 |
| StyI | CCWWGG | 2 cut(s) | 264, 1132 |
| TaaI | ACNGT | 5 cut(s) | 49, 284, 983, 1568, 1624 |
| TaiI | ACGT | 6 cut(s) | 137, 362, 554, 712, 746, 1458 |
| TaqI | TCGA | 6 cut(s) | 369, 534, 837, 1233, 1440, 1646 |
| TaqII | GACCGA | 1 cut(s) | 489 |
| TatI | WGTACW | 2 cut(s) | 447, 925 |
| TauI | GCSGC | 8 cut(s) | 160, 272, 296, 458, 492, 526, 690, 989 |
| TfiI | GAWTC | 5 cut(s) | 481, 1107, 1349, 1472, 1595 |
| Tru1I | TTAA | 3 cut(s) | 60, 1326, 1518 |
| Tru9I | TTAA | 3 cut(s) | 60, 1326, 1518 |
| TscAI | CASTG | 1 cut(s) | 54 |
| TseFI | GTSAC | 1 cut(s) | 1624 |
| TseI | GCWGC | 8 cut(s) | 127, 272, 424, 642, 672, 675, 678, 801 |
| Tsp45I | GTSAC | 1 cut(s) | 1624 |
| TspDTI | ATGAA | 3 cut(s) | 171, 1485, 1528 |
| TspGWI | ACGGA | 2 cut(s) | 555, 949 |
| TspRI | CASTG | 1 cut(s) | 54 |
| VpaK11BI | GGWCC | 3 cut(s) | 20, 339, 958 |
| XapI | RAATTY | 3 cut(s) | 719, 1066, 1235 |
| XbaI | TCTAGA | 1 cut(s) | 248 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 701 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1754 |
| XspI | CTAG | 4 cut(s) | 5, 249, 1035, 1448 |
| ZrmI | AGTACT | 1 cut(s) | 449 |