Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001552

Physical Location & Seq

Genomic Coordinates Reverse (-)

19056766 .. 19060087

Gene Structure 3322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1593 bp

ATGAACGTTGCACGCCAAGTGTTTGTGTTATTGTCTATGTTAGTTTTGATCTTTTGGGGTTTGGAGAGATGTGAGGCTTCTGGGAAGTTTAGCTTCGAAGTTCACCACATGTTCTCTGACGTAGTCAAGCAAACTCTTGGGTTTGACGATCTAGTGCCAGAAAACGGAAGTTTGGAGTACTTCAAGGTTTTGGCCCACCGTGATCGCTTCATCAGAGGTCGAGGTCTTGCCTCCAACAATGAAGAAACTCCTCTCACTTCCATTGGAAGCAACCTCACGCTTGCACTCAATTTTTTGGGATTTCTGCATTACGCCAATGTATCTTTGGGAACACCGGCGACTTGGTTTCTGGTGGCTCTGGACACCGGCAGCGATTTGTTCTGGTTGCCTTGCAATTGCGGTACTACTTGTATCCATGACTTGAAAGATGCTAGATTTTCCGAGAGTGTACCACTTAATCTATACACTCCCAATGCATCGACTACGAGTTCAAGCATTCGATGCAGTGACAAACGTTGTTTTGGATCGGGAAAGTGTTCTTCTCCTGAAAGTATTTGTCCTTATCAGATTGCCTTATCTAGCAACACAGTCACGACAGGGACATTGTTACAGGATGTATTGCATCTAGTCACAGAGGATGAGGATTTAAAGCCTGTCAATGCTAATGTAACGCTTGGTTGCGGTCAGAACCAGACAGGTGCGTTCCAGACAGATATTGCTGTGAATGGTGTTCTCGGGCTTAGTATGAAAGAATATTCTGTTCCGAGCCTTCTGGCAAAAGCGAATATCACCGCAAACTCCTTTTCAATGTGTTTCGGGCGTATCATTAGCGTTGTTGGAAGAATCAGTTTCGGAGACAAAGGCTACACAGACCAGGAGGAGACTCCATTAGTCTCTCTTGAAACAAGTACGGCATATGGTGTGAATGTGACGGGAGTATCAGTAGGGGGTGTTCCTGTTGATGTTCCCCTGTTTGCACTATTCGACACTGGCTCATCATTTACACTCTTACTGGAGTCAGCATATGGTGTTTTTACCAAAGCTTTTGACGATCTTATGGAGGACAAGCGACGCCCAGTTGATCCTGATTTTCCGTTTGAGTTCTGTTACGACTTAAGAGAAGAACATCTGAATTCTGATGCTCGTCCTCGTCATATGCAGTCCAAATGTTACAACCCCTGTAGAGATGATTTTCGTTGGAGGATCCAAAATGACTCTCAGGAATCCGTTTCTTACAGCAACGAGGGTACTAAGATGTACTGCTTGGGTATTCTGAAGAGCATAAATCTCAATATCATCGGACAGAACTTGATGTCGGGCCACCGCATTGTATTTGATCGGGAGAGGATGATTTTGGGTTGGAAGCAGTCTAATTGTTTTGAAGATGAAAGCTTAGCATCTGAGTCTCCTCCACCACCAGAGATCGAAGCTCCTCCACCAAGTGTATCCACTCCACCACCTGCTGCTTCTGCTACACCGCCCACAATCGATCCTCGTAACTCCACCAGAAACTCTGGCACAGGCGGTGCAGCCAATCTCAGCCCTCTTGCAGCTCAACTCCTATTTCTCCTACCACTTTTGGCTTTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0043170 GO:0044238 GO:0044425 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TAXi_N

Protein Analysis

530

Amino Acids

58.0

Weight (kDa)

4.97

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	104 - 286	2.2e-33	Xylanase inhibitor N-terminal
Asp	PF00026	104 - 438	6e-19	Eukaryotic aspartyl protease
TAXi_C	PF14541	305 - 443	4e-16	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17760 AT3G51330 AT3G51330 AT3G51330 AT3G51340 AT3G51340 AT3G51340 AT3G51340 AT3G51350
fragaria_vesca	FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190
malus_domestica	MD02G1124400.v1.1 MD02G1124500.v1.1 MD15G1238500.v1.1
prunus_persica	Prupe.7G173900_v2.0.a1
pyrus_communis	pycom02g09720
rosa_chinensis	RchiOBHm_Chr2g0098521 RchiOBHm_Chr2g0098531 RchiOBHm_Chr2g0098551 RchiOBHm_Chr2g0098601 RchiOBHm_Chr5g0032521
rosa_laevigata	RLG00000016804 RLG00000016805 RLG00000016809 RLG00000016811 RLG00000036276
rosa_roxburghii	Rroxscaffold_2G00143860 Rroxscaffold_2G00143910
rosa_rugosa	Rorug02G0073700
rosa_samantha	Rh2AG121000 Rh2AG121200 Rh2AG473700 Rh2BG124100 Rh2BG124200 Rh2BG124400 Rh2BG124600 Rh2BG124800 Rh2CG125600 Rh2CG125700 Rh2CG459400 Rh2DG126200 Rh2DG126700 Rh2DG126900 Rh5AG278400
rosa_wichuraiana	Rw0G004110 Rw2G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1468
Acc36I	ACCTGC	1 cut(s)	1468
AciI	CCGC	6 cut(s)	399, 681, 792, 1324, 1478, 1524
AclI	AACGTT	2 cut(s)	6, 514
AclWI	GGATC	5 cut(s)	532, 1076, 1198, 1211, 1484
AcsI	RAATTY	1 cut(s)	1132
AcuI	CTGAAG	1 cut(s)	1295
AcyI	GRCGYC	1 cut(s)	1072
AdeI	CACNNNGTG	1 cut(s)	1442
AfaI	GTAC	6 cut(s)	179, 403, 450, 910, 1249, 1259
AfiI	CCNNNNNNNGG	1 cut(s)	164
AflII	CTTAAG	1 cut(s)	1114
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	6 cut(s)	184, 424, 492, 807, 902, 1382
AjnI	CCWGG	1 cut(s)	873
AluBI	AGCT	5 cut(s)	93, 1043, 1392, 1430, 1553
AluI	AGCT	5 cut(s)	93, 1043, 1392, 1430, 1553
Alw26I	GTCTC	4 cut(s)	849, 875, 898, 1410
AlwI	GGATC	5 cut(s)	532, 1076, 1198, 1211, 1484
Ama87I	CYCGRG	1 cut(s)	734
AoxI	GGCC	2 cut(s)	192, 1318
ApeKI	GCWGC	4 cut(s)	369, 1463, 1529, 1550
ApoI	RAATTY	1 cut(s)	1132
Asp700I	GAANNNNTTC	1 cut(s)	535
AspS9I	GGNCC	2 cut(s)	193, 1318
AsuHPI	GGTGA	2 cut(s)	95, 781
AsuII	TTCGAA	1 cut(s)	96
AvaI	CYCGRG	1 cut(s)	734
BaeI	ACNNNNGTAYC	2 cut(s)	921, 954
BamHI	GGATCC	1 cut(s)	1203
BbvI	GCAGC	4 cut(s)	381, 1450, 1541, 1562
BceAI	ACGGC	1 cut(s)	927
BciT130I	CCWGG	1 cut(s)	875
BciVI	GTATCC	2 cut(s)	422, 1456
BcoDI	GTCTC	4 cut(s)	849, 875, 898, 1410
BfaI	CTAG	4 cut(s)	152, 432, 579, 626
BfmI	CTRYAG	1 cut(s)	1180
BfrI	CTTAAG	1 cut(s)	1114
BfuAI	ACCTGC	1 cut(s)	1468
BfuI	GTATCC	2 cut(s)	422, 1456
BisI	GCNGC	4 cut(s)	370, 1464, 1530, 1551
BlpI	GCTNAGC	1 cut(s)	1393
BlsI	GCNGC	4 cut(s)	371, 1465, 1531, 1552
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	875
BmeT110I	CYCGRG	1 cut(s)	734
BmgT120I	GGNCC	2 cut(s)	193, 1318
BmiI	GGNNCC	1 cut(s)	1205
BmrFI	CCNGG	1 cut(s)	875
BmrI	ACTGGG	1 cut(s)	1070
BmsI	GCATC	6 cut(s)	418, 485, 491, 631, 1129, 1406
BmuI	ACTGGG	1 cut(s)	1070
BpmI	CTGGAG	1 cut(s)	1034
Bpu1102I	GCTNAGC	1 cut(s)	1393
Bpu14I	TTCGAA	1 cut(s)	96
Bsa29I	ATCGAT	1 cut(s)	1488
BsaHI	GRCGYC	1 cut(s)	1072
BsaXI	ACNNNNNCTCC	2 cut(s)	927, 957
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse118I	RCCGGY	2 cut(s)	334, 365
Bse1I	ACTGG	3 cut(s)	994, 1017, 1076
BseBI	CCWGG	1 cut(s)	875
BseCI	ATCGAT	1 cut(s)	1488
BseGI	GGATG	3 cut(s)	619, 643, 1353
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	3 cut(s)	1232, 1392, 1552
BseNI	ACTGG	3 cut(s)	994, 1017, 1076
BseRI	GAGGAG	4 cut(s)	240, 893, 1398, 1422
BseXI	GCAGC	4 cut(s)	381, 1450, 1541, 1562
BsgI	GTGCAG	1 cut(s)	1548
BshFI	GGCC	2 cut(s)	194, 1320
BshVI	ATCGAT	1 cut(s)	1488
BsiHKCI	CYCGRG	1 cut(s)	734
BsiSI	CCGG	2 cut(s)	335, 366
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	4 cut(s)	849, 875, 898, 1410
BsmFI	GGGAC	1 cut(s)	613
BsmI	GAATGC	1 cut(s)	495
BsnI	GGCC	2 cut(s)	194, 1320
BsoBI	CYCGRG	1 cut(s)	734
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1720I	GCTNAGC	1 cut(s)	1393
BspACI	CCGC	6 cut(s)	399, 681, 792, 1324, 1478, 1524
BspANI	GGCC	2 cut(s)	194, 1320
BspCNI	CTCAG	3 cut(s)	1231, 1393, 1551
BspDI	ATCGAT	1 cut(s)	1488
BspLI	GGNNCC	1 cut(s)	1205
BspMI	ACCTGC	1 cut(s)	1468
BspPI	GGATC	5 cut(s)	532, 1076, 1198, 1211, 1484
BspQI	GCTCTTC	1 cut(s)	1271
BspT104I	TTCGAA	1 cut(s)	96
BspTI	CTTAAG	1 cut(s)	1114
BsrFI	RCCGGY	2 cut(s)	334, 365
BsrI	ACTGG	3 cut(s)	994, 1017, 1076
BssAI	RCCGGY	2 cut(s)	334, 365
BssNI	GRCGYC	1 cut(s)	1072
Bst2UI	CCWGG	1 cut(s)	875
Bst4CI	ACNGT	2 cut(s)	200, 589
Bst6I	CTCTTC	1 cut(s)	1271
BstACI	GRCGYC	1 cut(s)	1072
BstAFI	CTTAAG	1 cut(s)	1114
BstAPI	GCANNNNNTGC	1 cut(s)	501
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	13, 282
BstDEI	CTNAG	6 cut(s)	740, 1218, 1251, 1393, 1401, 1538
BstF5I	GGATG	3 cut(s)	619, 643, 1353
BstMAI	GTCTC	4 cut(s)	849, 875, 898, 1410
BstMWI	GCNNNNNNNGC	2 cut(s)	501, 1469
BstNI	CCWGG	1 cut(s)	875
BstNSI	RCATGY	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	873
BstSFI	CTRYAG	1 cut(s)	1180
BstV1I	GCAGC	4 cut(s)	381, 1450, 1541, 1562
BstX2I	RGATCY	1 cut(s)	1203
BstYI	RGATCY	1 cut(s)	1203
Bsu15I	ATCGAT	1 cut(s)	1488
BsuI	GTATCC	2 cut(s)	422, 1456
BsuRI	GGCC	2 cut(s)	194, 1320
BsuTUI	ATCGAT	1 cut(s)	1488
BtsCI	GGATG	3 cut(s)	619, 643, 1353
BtsI	GCAGTG	1 cut(s)	511
BtsIMutI	CAGTG	2 cut(s)	511, 987
BveI	ACCTGC	1 cut(s)	1468
Cac8I	GCNNGC	2 cut(s)	13, 282
Cfr10I	RCCGGY	2 cut(s)	334, 365
Cfr13I	GGNCC	2 cut(s)	193, 1318
ClaI	ATCGAT	1 cut(s)	1488
CseI	GACGC	1 cut(s)	1080
Csp6I	GTAC	6 cut(s)	178, 402, 449, 909, 1248, 1258
CviAII	CATG	2 cut(s)	109, 416
CviQI	GTAC	6 cut(s)	178, 402, 449, 909, 1248, 1258
DdeI	CTNAG	6 cut(s)	740, 1218, 1251, 1393, 1401, 1538
DraI	TTTAAA	1 cut(s)	648
DraIII	CACNNNGTG	1 cut(s)	1442
Eam1104I	CTCTTC	1 cut(s)	1271
EarI	CTCTTC	1 cut(s)	1271
Eco57I	CTGAAG	1 cut(s)	1295
Eco88I	CYCGRG	1 cut(s)	734
EcoRI	GAATTC	1 cut(s)	1132
EcoRII	CCWGG	1 cut(s)	873
EcoT22I	ATGCAT	1 cut(s)	478
FaeI	CATG	2 cut(s)	112, 419
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	2 cut(s)	108, 415
FauNDI	CATATG	3 cut(s)	916, 1024, 1155
Fnu4HI	GCNGC	4 cut(s)	370, 1464, 1530, 1551
FokI	GGATG	3 cut(s)	626, 650, 1360
Fsp4HI	GCNGC	4 cut(s)	370, 1464, 1530, 1551
FspBI	CTAG	4 cut(s)	152, 432, 579, 626
GluI	GCNGC	4 cut(s)	370, 1464, 1530, 1551
GsuI	CTGGAG	1 cut(s)	1034
HaeIII	GGCC	2 cut(s)	194, 1320
HapII	CCGG	2 cut(s)	335, 366
HgaI	GACGC	1 cut(s)	1080
Hin1I	GRCGYC	1 cut(s)	1072
Hin1II	CATG	2 cut(s)	112, 419
HindIII	AAGCTT	2 cut(s)	1041, 1390
HinfI	GANTC	6 cut(s)	843, 883, 1016, 1214, 1223, 1403
HpaII	CCGG	2 cut(s)	335, 366
HphI	GGTGA	2 cut(s)	95, 781
Hpy166II	GTNNAC	2 cut(s)	103, 449
Hpy188III	TCNNGA	9 cut(s)	359, 528, 545, 592, 706, 899, 1085, 1220, 1340
Hpy8I	GTNNAC	2 cut(s)	103, 449
Hpy99I	CGWCG	1 cut(s)	1074
HpyAV	CCTTC	1 cut(s)	779
HpyCH4III	ACNGT	2 cut(s)	200, 589
HpyCH4IV	ACGT	3 cut(s)	6, 120, 514
HpyF10VI	GCNNNNNNNGC	2 cut(s)	501, 1469
HpyF3I	CTNAG	6 cut(s)	740, 1218, 1251, 1393, 1401, 1538
HpySE526I	ACGT	3 cut(s)	6, 120, 514
Hsp92I	GRCGYC	1 cut(s)	1072
Hsp92II	CATG	2 cut(s)	112, 419
LguI	GCTCTTC	1 cut(s)	1271
LmnI	GCTCC	1 cut(s)	1435
Lsp1109I	GCAGC	4 cut(s)	381, 1450, 1541, 1562
LweI	GCATC	6 cut(s)	418, 485, 491, 631, 1129, 1406
MaeI	CTAG	4 cut(s)	152, 432, 579, 626
MaeII	ACGT	3 cut(s)	6, 120, 514
MaeIII	GTNAC	9 cut(s)	506, 589, 606, 628, 667, 928, 1106, 1169, 1496
MboII	GAAGA	6 cut(s)	254, 531, 852, 1133, 1288, 1394
MfeI	CAATTG	1 cut(s)	394
MflI	RGATCY	1 cut(s)	1203
MluCI	AATT	4 cut(s)	289, 394, 1132, 1372
MlyI	GAGTC	4 cut(s)	877, 1025, 1208, 1412
MmeI	TCCRAC	4 cut(s)	258, 817, 1178, 1340
Mph1103I	ATGCAT	1 cut(s)	478
MroXI	GAANNNNTTC	1 cut(s)	535
MseI	TTAA	3 cut(s)	456, 647, 1115
MspCI	CTTAAG	1 cut(s)	1114
MspI	CCGG	2 cut(s)	335, 366
MspR9I	CCNGG	1 cut(s)	875
MunI	CAATTG	1 cut(s)	394
Mva1269I	GAATGC	1 cut(s)	495
MvaI	CCWGG	1 cut(s)	875
MwoI	GCNNNNNNNGC	2 cut(s)	501, 1469
NdeI	CATATG	3 cut(s)	916, 1024, 1155
NlaIII	CATG	2 cut(s)	112, 419
NlaIV	GGNNCC	1 cut(s)	1205
NmuCI	GTSAC	4 cut(s)	506, 589, 628, 928
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	1 cut(s)	112
NspV	TTCGAA	1 cut(s)	96
PaqCI	CACCTGC	1 cut(s)	1468
PciI	ACATGT	1 cut(s)	108
PciSI	GCTCTTC	1 cut(s)	1271
PctI	GAATGC	1 cut(s)	495
PdmI	GAANNNNTTC	1 cut(s)	535
PfeI	GAWTC	2 cut(s)	843, 1223
PflFI	GACNNNGTC	1 cut(s)	122
PkrI	GCNGC	4 cut(s)	371, 1465, 1531, 1552
PleI	GAGTC	4 cut(s)	877, 1024, 1208, 1411
PpsI	GAGTC	4 cut(s)	877, 1024, 1208, 1411
PscI	ACATGT	1 cut(s)	108
Psp1406I	AACGTT	2 cut(s)	6, 514
Psp6I	CCWGG	1 cut(s)	873
PspGI	CCWGG	1 cut(s)	873
PspN4I	GGNNCC	1 cut(s)	1205
PspPI	GGNCC	2 cut(s)	193, 1318
PsrI	GAACNNNNNNTAC	2 cut(s)	936, 968
PsuI	RGATCY	1 cut(s)	1203
PsyI	GACNNNGTC	1 cut(s)	122
RsaI	GTAC	6 cut(s)	179, 403, 450, 910, 1249, 1259
RsaNI	GTAC	6 cut(s)	178, 402, 449, 909, 1248, 1258
SapI	GCTCTTC	1 cut(s)	1271
SaqAI	TTAA	3 cut(s)	456, 647, 1115
SatI	GCNGC	4 cut(s)	370, 1464, 1530, 1551
Sau96I	GGNCC	2 cut(s)	193, 1318
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	4 cut(s)	877, 1025, 1208, 1412
ScrFI	CCNGG	1 cut(s)	875
SfaNI	GCATC	6 cut(s)	418, 485, 491, 631, 1129, 1406
SfcI	CTRYAG	1 cut(s)	1180
SfuI	TTCGAA	1 cut(s)	96
SgrAI	CRCCGGYG	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	1114
SmoI	CTYRAG	1 cut(s)	1114
Sse9I	AATT	4 cut(s)	289, 394, 1132, 1372
SsiI	CCGC	6 cut(s)	399, 681, 792, 1324, 1478, 1524
SspI	AATATT	1 cut(s)	755
SspMI	CTAG	4 cut(s)	152, 432, 579, 626
StyD4I	CCNGG	1 cut(s)	873
TaaI	ACNGT	2 cut(s)	200, 589
TaiI	ACGT	3 cut(s)	9, 123, 517
TaqI	TCGA	7 cut(s)	96, 220, 479, 499, 984, 1425, 1488
TasI	AATT	4 cut(s)	289, 394, 1132, 1372
TatI	WGTACW	2 cut(s)	177, 1257
TfiI	GAWTC	2 cut(s)	843, 1223
Tru1I	TTAA	3 cut(s)	456, 647, 1115
Tru9I	TTAA	3 cut(s)	456, 647, 1115
TscAI	CASTG	2 cut(s)	511, 994
TseFI	GTSAC	4 cut(s)	506, 589, 628, 928
TseI	GCWGC	4 cut(s)	369, 1463, 1529, 1550
Tsp45I	GTSAC	4 cut(s)	506, 589, 628, 928
TspDTI	ATGAA	5 cut(s)	17, 199, 255, 761, 1401
TspGWI	ACGGA	3 cut(s)	180, 1083, 1216
TspRI	CASTG	2 cut(s)	511, 994
Tth111I	GACNNNGTC	1 cut(s)	122
Vha464I	CTTAAG	1 cut(s)	1114
XapI	RAATTY	1 cut(s)	1132
XceI	RCATGY	1 cut(s)	112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	535
XspI	CTAG	4 cut(s)	152, 432, 579, 626
ZrmI	AGTACT	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.