Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001552

Physical Location & Seq

Genomic Coordinates Forward (+)

10610281 .. 10611996

Gene Structure 1716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG124200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCCGCCTGGACTGGCAGAGCTTCTAGTAGCAACTCTACTCTCTTGCCTTTGTTAGTGATTTTCGTGTTGGGTTTGGCTTGTCGGAGCTGTGACGGGTTCGGGACGTTCGGGTTTAATTTCCACCACCGGTTCTCGGATCCCGTCACCGGAATTCTCGGCTACGATGAACTCCCACAAAAGGGGAGTCCTGAATATTACGCTGCCATAACCCACCGTGACCGGTTGATCCGGGGCCGCCACCTCGGCGAAACGAAGACGCCGCTTACTTTCGTTTACGGCAACGAGACTTACCGGATTCCCGCTTTTGGACACTTGCATTATGCGAATGTTTCTGTTGGGACTCCAAGGACTTCGTATCTTGTGGCTTTGGATACAGGCAGTGATTTATTGTGGTTGCCGTGTGATTGTATCAGTTGTTTTGAGGGGGTTGATACATCACATGGAGAGTTGGATTTTGACATTTACAGCCCGAATAAATCAACAACAAGCAAAAAGGTTCCTTGCAACAGCACATATTGTGAAAAACAGCAGCAGTGCTCTTCACCAAGTAGTGATTGTCGTTACAGTATCAACTATCTTTCTGCTAACACTTCATCCTCTGGAATCGTAGTAGAGGACGTTTTGCACTTGACTACTGATGATGCTAAACTAAAAGGTGTCGAGGCGCCGATAGCCTTTGGGTGTGGTAGGTATCAGACTGGTATATTTTTAAGTGGGGCAGCTCCCAATGGTCTATTAGGGCTTGGTATGGATGGTGTATCCATTCCTAGCATGTTAGCAAAACATGGGCTTGCTTCAGATTCTTTTTCCATGTGTTTTGGAATTGATGGAAGTGGGAGAATCAGATTTGGTGATAATGGAAGTGTAGACCAACCAGAAACACCATTCTATGTCAGAGATAAATATCCAACTTACAACATTACTGTTACTCAAATAGCCATTAATAAAAGTGTTGCTGATCTTGATTTCTATGCAATTTGGGATTCTGGTACCTCATTTACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0043170 GO:0044238 GO:0044425 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

335

Amino Acids

36.35

Weight (kDa)

5.55

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	108 - 286	7.1e-37	Xylanase inhibitor N-terminal
Asp	PF00026	108 - 334	3.1e-13	Eukaryotic aspartyl protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17760 AT3G51330 AT3G51330 AT3G51330 AT3G51340 AT3G51340 AT3G51340 AT3G51340 AT3G51350
fragaria_vesca	FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190
malus_domestica	MD02G1124400.v1.1 MD02G1124500.v1.1 MD15G1238500.v1.1
prunus_persica	Prupe.7G173900_v2.0.a1
pyrus_communis	pycom02g09720
rosa_chinensis	RchiOBHm_Chr2g0098521 RchiOBHm_Chr2g0098531 RchiOBHm_Chr2g0098551 RchiOBHm_Chr2g0098601 RchiOBHm_Chr5g0032521
rosa_laevigata	RLG00000016804 RLG00000016805 RLG00000016809 RLG00000016811 RLG00000036276
rosa_roxburghii	Rroxscaffold_2G00143860 Rroxscaffold_2G00143910
rosa_rugosa	Rorug02G0073700
rosa_samantha	Rh2AG121000 Rh2AG121200 Rh2AG473700 Rh2BG124100 Rh2BG124200 Rh2BG124400 Rh2BG124600 Rh2BG124800 Rh2CG125600 Rh2CG125700 Rh2CG459400 Rh2DG126200 Rh2DG126700 Rh2DG126900 Rh5AG278400
rosa_wichuraiana	Rw0G004110 Rw2G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	992
AccB1I	GGYRCC	2 cut(s)	667, 992
AccI	GTMKAC	1 cut(s)	870
AciI	CCGC	4 cut(s)	6, 238, 263, 303
AclWI	GGATC	3 cut(s)	134, 147, 223
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	153
AcuI	CTGAAG	1 cut(s)	783
AcyI	GRCGYC	2 cut(s)	260, 668
AfaI	GTAC	1 cut(s)	994
AfiI	CCNNNNNNNGG	5 cut(s)	136, 149, 181, 182, 308
AgeI	ACCGGT	2 cut(s)	129, 222
AjnI	CCWGG	1 cut(s)	8
AluBI	AGCT	3 cut(s)	23, 90, 725
AluI	AGCT	3 cut(s)	23, 90, 725
Alw21I	GWGCWC	1 cut(s)	542
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	3 cut(s)	134, 147, 223
AoxI	GGCC	2 cut(s)	3, 235
ApeKI	GCWGC	3 cut(s)	203, 532, 722
ApoI	RAATTY	1 cut(s)	153
ArsI	GACNNNNNNTTYG	2 cut(s)	172, 204
AseI	ATTAAT	1 cut(s)	945
AsiGI	ACCGGT	2 cut(s)	129, 222
Asp718I	GGTACC	1 cut(s)	992
AspLEI	GCGC	1 cut(s)	670
AspS9I	GGNCC	1 cut(s)	235
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	139, 537, 866
BamHI	GGATCC	1 cut(s)	139
BanI	GGYRCC	2 cut(s)	667, 992
BbsI	GAAGAC	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	542
BbvI	GCAGC	3 cut(s)	190, 544, 734
BccI	CCATC	2 cut(s)	749, 824
BceAI	ACGGC	2 cut(s)	295, 385
BciT130I	CCWGG	1 cut(s)	10
BciVI	GTATCC	2 cut(s)	367, 772
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	2 cut(s)	27, 771
BfoI	RGCGCY	1 cut(s)	671
BfuI	GTATCC	2 cut(s)	367, 772
BglI	GCCNNNNNGGC	1 cut(s)	246
BisI	GCNGC	6 cut(s)	6, 204, 238, 263, 533, 723
BlsI	GCNGC	6 cut(s)	7, 205, 239, 264, 534, 724
Bme1390I	CCNGG	2 cut(s)	10, 233
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	5 cut(s)	141, 236, 501, 669, 994
BmrFI	CCNGG	2 cut(s)	10, 233
BmsI	GCATC	1 cut(s)	634
BpiI	GAAGAC	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	233
BsaAI	YACGTR	1 cut(s)	1005
BsaBI	GATNNNNATC	1 cut(s)	906
BsaHI	GRCGYC	2 cut(s)	260, 668
BsaJI	CCNNGG	3 cut(s)	232, 244, 347
BsaWI	WCCGGW	4 cut(s)	129, 149, 222, 294
Bsc4I	CCNNNNNNNGG	5 cut(s)	136, 149, 181, 182, 308
Bse118I	RCCGGY	2 cut(s)	129, 222
Bse1I	ACTGG	2 cut(s)	19, 706
Bse8I	GATNNNNATC	1 cut(s)	906
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	3 cut(s)	232, 244, 347
BseGI	GGATG	2 cut(s)	596, 760
BseJI	GATNNNNATC	1 cut(s)	906
BseLI	CCNNNNNNNGG	5 cut(s)	136, 149, 181, 182, 308
BseNI	ACTGG	2 cut(s)	19, 706
BseXI	GCAGC	3 cut(s)	190, 544, 734
BshFI	GGCC	2 cut(s)	5, 237
BshNI	GGYRCC	2 cut(s)	667, 992
BshTI	ACCGGT	2 cut(s)	129, 222
BsiHKAI	GWGCWC	1 cut(s)	542
BsiSI	CCGG	5 cut(s)	130, 150, 223, 232, 295
BslFI	GGGAC	2 cut(s)	118, 355
BslI	CCNNNNNNNGG	5 cut(s)	136, 149, 181, 182, 308
BsmAI	GTCTC	1 cut(s)	281
BsmFI	GGGAC	2 cut(s)	118, 355
BsnI	GGCC	2 cut(s)	5, 237
Bsp1286I	GDGCHC	1 cut(s)	542
Bsp143I	GATC	3 cut(s)	139, 228, 961
BspACI	CCGC	4 cut(s)	6, 238, 263, 303
BspANI	GGCC	2 cut(s)	5, 237
BspLI	GGNNCC	5 cut(s)	141, 236, 501, 669, 994
BspPI	GGATC	3 cut(s)	134, 147, 223
BspQI	GCTCTTC	1 cut(s)	547
BspT107I	GGYRCC	2 cut(s)	667, 992
BsrFI	RCCGGY	2 cut(s)	129, 222
BsrI	ACTGG	2 cut(s)	19, 706
BssAI	RCCGGY	2 cut(s)	129, 222
BssECI	CCNNGG	3 cut(s)	232, 244, 347
BssMI	GATC	3 cut(s)	139, 228, 961
BssNI	GRCGYC	2 cut(s)	260, 668
BssT1I	CCWWGG	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	3 cut(s)	218, 569, 928
Bst6I	CTCTTC	1 cut(s)	547
BstACI	GRCGYC	2 cut(s)	260, 668
BstBAI	YACGTR	1 cut(s)	1005
BstC8I	GCNNGC	1 cut(s)	795
BstF5I	GGATG	2 cut(s)	596, 760
BstH2I	RGCGCY	1 cut(s)	671
BstHHI	GCGC	1 cut(s)	670
BstKTI	GATC	3 cut(s)	142, 231, 964
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	3 cut(s)	139, 228, 961
BstMWI	GCNNNNNNNGC	2 cut(s)	246, 674
BstNI	CCWGG	1 cut(s)	10
BstNSI	RCATGY	1 cut(s)	778
BstSCI	CCNGG	2 cut(s)	8, 231
BstSNI	TACGTA	1 cut(s)	1005
BstV1I	GCAGC	3 cut(s)	190, 544, 734
BstV2I	GAAGAC	1 cut(s)	263
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuI	GTATCC	2 cut(s)	367, 772
BsuRI	GGCC	2 cut(s)	5, 237
BtsCI	GGATG	2 cut(s)	596, 760
BtsI	GCAGTG	2 cut(s)	388, 542
BtsIMutI	CAGTG	2 cut(s)	388, 542
Cac8I	GCNNGC	1 cut(s)	795
CfoI	GCGC	1 cut(s)	670
Cfr10I	RCCGGY	2 cut(s)	129, 222
Cfr13I	GGNCC	1 cut(s)	235
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	993
CspAI	ACCGGT	2 cut(s)	129, 222
CviAII	CATG	4 cut(s)	443, 775, 788, 814
CviQI	GTAC	1 cut(s)	993
DinI	GGCGCC	1 cut(s)	669
DpnI	GATC	3 cut(s)	141, 230, 963
DpnII	GATC	3 cut(s)	139, 228, 961
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	547
EarI	CTCTTC	1 cut(s)	547
Eco105I	TACGTA	1 cut(s)	1005
Eco130I	CCWWGG	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	783
EcoRI	GAATTC	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	347
EgeI	GGCGCC	1 cut(s)	669
EheI	GGCGCC	1 cut(s)	669
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	4 cut(s)	446, 778, 791, 817
FaqI	GGGAC	2 cut(s)	118, 355
FatI	CATG	4 cut(s)	442, 774, 787, 813
FauI	CCCGC	1 cut(s)	310
FblI	GTMKAC	1 cut(s)	870
Fnu4HI	GCNGC	6 cut(s)	6, 204, 238, 263, 533, 723
FokI	GGATG	2 cut(s)	583, 767
Fsp4HI	GCNGC	6 cut(s)	6, 204, 238, 263, 533, 723
FspBI	CTAG	2 cut(s)	27, 771
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	6 cut(s)	6, 204, 238, 263, 533, 723
HaeII	RGCGCY	1 cut(s)	671
HaeIII	GGCC	2 cut(s)	5, 237
HapII	CCGG	5 cut(s)	130, 150, 223, 232, 295
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	1 cut(s)	670
Hin1I	GRCGYC	2 cut(s)	260, 668
Hin1II	CATG	4 cut(s)	446, 778, 791, 817
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HinfI	GANTC	7 cut(s)	187, 298, 343, 606, 803, 843, 986
HpaII	CCGG	5 cut(s)	130, 150, 223, 232, 295
HphI	GGTGA	3 cut(s)	139, 537, 866
Hpy166II	GTNNAC	2 cut(s)	277, 871
Hpy188I	TCNGA	6 cut(s)	87, 139, 699, 802, 848, 899
Hpy188III	TCNNGA	4 cut(s)	103, 191, 603, 965
Hpy8I	GTNNAC	2 cut(s)	277, 871
HpyCH4III	ACNGT	3 cut(s)	218, 569, 928
HpyCH4IV	ACGT	3 cut(s)	107, 621, 1004
HpyCH4V	TGCA	4 cut(s)	319, 507, 628, 977
HpyF10VI	GCNNNNNNNGC	2 cut(s)	246, 674
HpySE526I	ACGT	3 cut(s)	107, 621, 1004
Hsp92I	GRCGYC	2 cut(s)	260, 668
Hsp92II	CATG	4 cut(s)	446, 778, 791, 817
HspAI	GCGC	1 cut(s)	668
KasI	GGCGCC	1 cut(s)	667
KpnI	GGTACC	1 cut(s)	996
Kzo9I	GATC	3 cut(s)	139, 228, 961
LguI	GCTCTTC	1 cut(s)	547
LmnI	GCTCC	2 cut(s)	87, 730
Lsp1109I	GCAGC	3 cut(s)	190, 544, 734
LweI	GCATC	1 cut(s)	634
MaeI	CTAG	2 cut(s)	27, 771
MaeII	ACGT	3 cut(s)	107, 621, 1004
MaeIII	GTNAC	5 cut(s)	92, 145, 218, 563, 928
MalI	GATC	3 cut(s)	141, 230, 963
MboI	GATC	3 cut(s)	139, 228, 961
MboII	GAAGA	2 cut(s)	268, 534
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	542
MluCI	AATT	4 cut(s)	118, 153, 825, 978
Mly113I	GGCGCC	1 cut(s)	668
MlyI	GAGTC	2 cut(s)	196, 337
MmeI	TCCRAC	3 cut(s)	65, 432, 935
MnlI	CCTC	6 cut(s)	254, 418, 610, 610, 658, 1006
MseI	TTAA	3 cut(s)	117, 713, 945
MspI	CCGG	5 cut(s)	130, 150, 223, 232, 295
MspR9I	CCNGG	2 cut(s)	10, 233
MvaI	CCWGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	2 cut(s)	246, 674
NarI	GGCGCC	1 cut(s)	668
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	3 cut(s)	139, 228, 961
NlaIII	CATG	4 cut(s)	446, 778, 791, 817
NlaIV	GGNNCC	5 cut(s)	141, 236, 501, 669, 994
NmeAIII	GCCGAG	2 cut(s)	138, 225
NmuCI	GTSAC	3 cut(s)	92, 145, 218
NspI	RCATGY	1 cut(s)	778
PciSI	GCTCTTC	1 cut(s)	547
PfeI	GAWTC	5 cut(s)	298, 606, 803, 843, 986
PinAI	ACCGGT	2 cut(s)	129, 222
PkrI	GCNGC	6 cut(s)	7, 205, 239, 264, 534, 724
PleI	GAGTC	2 cut(s)	195, 337
PluTI	GGCGCC	1 cut(s)	671
PpsI	GAGTC	2 cut(s)	195, 337
Ppu21I	YACGTR	1 cut(s)	1005
PshBI	ATTAAT	1 cut(s)	945
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	5 cut(s)	141, 236, 501, 669, 994
PspPI	GGNCC	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	139
RsaI	GTAC	1 cut(s)	994
RsaNI	GTAC	1 cut(s)	993
SapI	GCTCTTC	1 cut(s)	547
SaqAI	TTAA	3 cut(s)	117, 713, 945
SatI	GCNGC	6 cut(s)	6, 204, 238, 263, 533, 723
Sau3AI	GATC	3 cut(s)	139, 228, 961
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	2 cut(s)	196, 337
ScrFI	CCNGG	2 cut(s)	10, 233
SduI	GDGCHC	1 cut(s)	542
SfaNI	GCATC	1 cut(s)	634
SfoI	GGCGCC	1 cut(s)	669
SnaBI	TACGTA	1 cut(s)	1005
Sse9I	AATT	4 cut(s)	118, 153, 825, 978
SsiI	CCGC	4 cut(s)	6, 238, 263, 303
SspDI	GGCGCC	1 cut(s)	667
SspI	AATATT	1 cut(s)	197
SspMI	CTAG	2 cut(s)	27, 771
StyD4I	CCNGG	2 cut(s)	8, 231
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	3 cut(s)	218, 569, 928
TaiI	ACGT	3 cut(s)	110, 624, 1007
TaqI	TCGA	1 cut(s)	663
TasI	AATT	4 cut(s)	118, 153, 825, 978
TauI	GCSGC	3 cut(s)	8, 240, 265
TfiI	GAWTC	5 cut(s)	298, 606, 803, 843, 986
Tru1I	TTAA	3 cut(s)	117, 713, 945
Tru9I	TTAA	3 cut(s)	117, 713, 945
TscAI	CASTG	2 cut(s)	388, 542
TseFI	GTSAC	3 cut(s)	92, 145, 218
TseI	GCWGC	3 cut(s)	203, 532, 722
Tsp45I	GTSAC	3 cut(s)	92, 145, 218
TspDTI	ATGAA	2 cut(s)	183, 585
TspRI	CASTG	2 cut(s)	388, 542
VspI	ATTAAT	1 cut(s)	945
XapI	RAATTY	1 cut(s)	153
XceI	RCATGY	1 cut(s)	778
XmiI	GTMKAC	1 cut(s)	870
XspI	CTAG	2 cut(s)	27, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.