Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001552

Physical Location & Seq

Genomic Coordinates Reverse (-)

78313137 .. 78316052

Gene Structure 2916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036276

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGTGTGGATCAGATTTGATGATAATGGAAGTGTAGACCAACCAGAAACACCATTCTATGTCAGAGATAAATATCCAACTTACAACATTACGGTTACTCAAATAGCCGTTGGAAAAAGTGTTGCTGATCTTGAATTCTATGCAATTTGGGACTCTGGTACCACATTTACGTACCTAAATGATCCAGCTTACACCCATATTTCTAAGAGTTTCAACAGCGCCATCAAAGATAAGCGGGCTACATATAATTTTGATCTTCCTTTTGAATATTGTTTTACAGTCAGTGAAGAGCAAGGTCTCCATCAAGCGTGGTTCCTGACTTCCTGTGATGTGTTGATGTTATCGAAAGAGCTTGGTAATTACAGACATGCTCTTACTGATGCTGAGGAAGCAATTAGGCTCAGAAACACTAATGTCAAGTTCTATTCTCCAATTTCTGCTTGGTTGAACCGTTTGCTACATTTGCAGTTTCAGAGGCTCCTTCTGAGGATTTGCAGACGTGCAGATATATGGGTAGAGTGGCACTGTGGGCAAAGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0043170 GO:0044238 GO:0044425 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

181

Amino Acids

21.13

Weight (kDa)

5.93

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_C	PF14541	28 - 96	1.8e-07	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17760 AT3G51330 AT3G51330 AT3G51330 AT3G51340 AT3G51340 AT3G51340 AT3G51340 AT3G51350
fragaria_vesca	FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190
malus_domestica	MD02G1124400.v1.1 MD02G1124500.v1.1 MD15G1238500.v1.1
prunus_persica	Prupe.7G173900_v2.0.a1
pyrus_communis	pycom02g09720
rosa_chinensis	RchiOBHm_Chr2g0098521 RchiOBHm_Chr2g0098531 RchiOBHm_Chr2g0098551 RchiOBHm_Chr2g0098601 RchiOBHm_Chr5g0032521
rosa_laevigata	RLG00000016804 RLG00000016805 RLG00000016809 RLG00000016811 RLG00000036276
rosa_roxburghii	Rroxscaffold_2G00143860 Rroxscaffold_2G00143910
rosa_rugosa	Rorug02G0073700
rosa_samantha	Rh2AG121000 Rh2AG121200 Rh2AG473700 Rh2BG124100 Rh2BG124200 Rh2BG124400 Rh2BG124600 Rh2BG124800 Rh2CG125600 Rh2CG125700 Rh2CG459400 Rh2DG126200 Rh2DG126700 Rh2DG126900 Rh5AG278400
rosa_wichuraiana	Rw0G004110 Rw2G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	158
AccB1I	GGYRCC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	36
AciI	CCGC	1 cut(s)	235
AclWI	GGATC	2 cut(s)	17, 176
AcsI	RAATTY	1 cut(s)	134
AfaI	GTAC	2 cut(s)	160, 173
AgsI	TTSAA	4 cut(s)	134, 214, 266, 448
AjiI	CACGTC	1 cut(s)	500
AluBI	AGCT	2 cut(s)	188, 352
AluI	AGCT	2 cut(s)	188, 352
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	2 cut(s)	17, 176
ApoI	RAATTY	1 cut(s)	134
Asp718I	GGTACC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	221
BaeI	ACNNNNGTAYC	2 cut(s)	142, 175
BanI	GGYRCC	1 cut(s)	158
BbvCI	CCTCAGC	1 cut(s)	384
BccI	CCATC	2 cut(s)	230, 309
BceAI	ACGGC	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	302
BfoI	RGCGCY	1 cut(s)	222
BmgBI	CACGTC	1 cut(s)	500
BmiI	GGNNCC	3 cut(s)	160, 314, 479
BmsI	GCATC	1 cut(s)	370
Bpu10I	CCTNAGC	1 cut(s)	384
BsaAI	YACGTR	1 cut(s)	171
BsaBI	GATNNNNATC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	302
Bse8I	GATNNNNATC	1 cut(s)	72
BseJI	GATNNNNATC	1 cut(s)	72
BseMII	CTCAG	3 cut(s)	375, 415, 476
BsgI	GTGCAG	1 cut(s)	522
BshNI	GGYRCC	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	164
Bso31I	GGTCTC	1 cut(s)	302
Bsp143I	GATC	4 cut(s)	9, 127, 181, 253
BspACI	CCGC	1 cut(s)	235
BspCNI	CTCAG	3 cut(s)	376, 414, 477
BspLI	GGNNCC	3 cut(s)	160, 314, 479
BspPI	GGATC	2 cut(s)	17, 176
BspQI	GCTCTTC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	302
BssMI	GATC	4 cut(s)	9, 127, 181, 253
Bst4CI	ACNGT	4 cut(s)	94, 280, 452, 527
Bst6I	CTCTTC	1 cut(s)	282
BstBAI	YACGTR	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	4 cut(s)	204, 384, 401, 485
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	4 cut(s)	12, 130, 184, 256
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	4 cut(s)	9, 127, 181, 253
BstMWI	GCNNNNNNNGC	3 cut(s)	389, 463, 529
BstNSI	RCATGY	1 cut(s)	371
BstSNI	TACGTA	1 cut(s)	171
BtrI	CACGTC	1 cut(s)	500
BtsIMutI	CAGTG	2 cut(s)	289, 523
Cac8I	GCNNGC	1 cut(s)	237
CfoI	GCGC	1 cut(s)	221
Csp6I	GTAC	2 cut(s)	159, 172
CviAII	CATG	1 cut(s)	368
CviJI	RGCY	6 cut(s)	107, 188, 239, 352, 400, 478
CviKI_1	RGCY	6 cut(s)	107, 188, 239, 352, 400, 478
CviQI	GTAC	2 cut(s)	159, 172
DdeI	CTNAG	4 cut(s)	204, 384, 401, 485
DpnI	GATC	4 cut(s)	11, 129, 183, 255
DpnII	GATC	4 cut(s)	9, 127, 181, 253
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco105I	TACGTA	1 cut(s)	171
Eco31I	GGTCTC	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	134
FaeI	CATG	1 cut(s)	371
FaiI	YATR	8 cut(s)	60, 141, 198, 244, 246, 369, 509, 511
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	1 cut(s)	367
FauI	CCCGC	1 cut(s)	228
FblI	GTMKAC	1 cut(s)	36
GlaI	GCGC	1 cut(s)	220
HaeII	RGCGCY	1 cut(s)	222
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	1 cut(s)	371
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HinfI	GANTC	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	5 cut(s)	14, 65, 404, 474, 486
Hpy188III	TCNNGA	2 cut(s)	131, 316
Hpy8I	GTNNAC	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	491
HpyCH4III	ACNGT	4 cut(s)	94, 280, 452, 527
HpyCH4IV	ACGT	2 cut(s)	170, 499
HpyCH4V	TGCA	4 cut(s)	143, 466, 495, 503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	389, 463, 529
HpyF3I	CTNAG	4 cut(s)	204, 384, 401, 485
HpySE526I	ACGT	2 cut(s)	170, 499
Hsp92II	CATG	1 cut(s)	371
HspAI	GCGC	1 cut(s)	219
KpnI	GGTACC	1 cut(s)	162
Kzo9I	GATC	4 cut(s)	9, 127, 181, 253
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	483
LpnPI	CCDG	5 cut(s)	57, 141, 198, 329, 337
LweI	GCATC	1 cut(s)	370
MaeII	ACGT	2 cut(s)	170, 499
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	4 cut(s)	11, 129, 183, 255
MboI	GATC	4 cut(s)	9, 127, 181, 253
MboII	GAAGA	2 cut(s)	248, 299
MluCI	AATT	6 cut(s)	134, 144, 247, 358, 393, 432
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	2 cut(s)	91, 101
MnlI	CCTC	3 cut(s)	379, 468, 480
MwoI	GCNNNNNNNGC	3 cut(s)	389, 463, 529
NdeII	GATC	4 cut(s)	9, 127, 181, 253
NlaIII	CATG	1 cut(s)	371
NlaIV	GGNNCC	3 cut(s)	160, 314, 479
NspI	RCATGY	1 cut(s)	371
PciSI	GCTCTTC	1 cut(s)	282
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Ppu21I	YACGTR	1 cut(s)	171
PspN4I	GGNNCC	3 cut(s)	160, 314, 479
RsaI	GTAC	2 cut(s)	160, 173
RsaNI	GTAC	2 cut(s)	159, 172
SapI	GCTCTTC	1 cut(s)	282
Sau3AI	GATC	4 cut(s)	9, 127, 181, 253
SchI	GAGTC	1 cut(s)	146
SetI	ASST	6 cut(s)	173, 177, 190, 298, 354, 502
SfaNI	GCATC	1 cut(s)	370
SnaBI	TACGTA	1 cut(s)	171
Sse9I	AATT	6 cut(s)	134, 144, 247, 358, 393, 432
SsiI	CCGC	1 cut(s)	235
SspI	AATATT	1 cut(s)	269
TaaI	ACNGT	4 cut(s)	94, 280, 452, 527
TaiI	ACGT	2 cut(s)	173, 502
TaqI	TCGA	1 cut(s)	344
TasI	AATT	6 cut(s)	134, 144, 247, 358, 393, 432
TscAI	CASTG	2 cut(s)	289, 530
TspRI	CASTG	2 cut(s)	289, 530
XapI	RAATTY	1 cut(s)	134
XceI	RCATGY	1 cut(s)	371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	438
XmiI	GTMKAC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.