Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001552

Physical Location & Seq

Genomic Coordinates Forward (+)

10579517 .. 10581580

Gene Structure 2064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG126200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCCGACTGGACTTGCAGAGCTTCTAGTAGCAACTCTACTCTCTTGCCTCCTCTGTTACTGGTTTTCGTATTGGGTTTGGCTTGTCGGAGCTGTAACGGGTTCGGGAAGTTCGAGTTTGATTTCTACCACCGGTTGTCGGATCCCGTCACCGGAATTCTCGGCTACGATGAGCTCCCGCAAAAGGGTAGCCCTGAATATTACGCTACCATGACTCACCGGGACCGGTTGATCCGGGGCCGCCACCTCGGCCAAACGACGACGCCGCTTACTTTCGTTTACGGCAACGATACTTACCGGATTGGCGCTTTTGGACACTTGCATTATGCGAATGTTTCTGTTGGGACTCCAAGGACTTCGTATATTGTGGCTTTGGATACAGGCAGTGATTTATTGTGGTTGCCGTGTGATTGTATCAGTTGTGTGAAGGGGTTTAATACATCAGATGGAGAGGTGGTGGATTTTGACATCTACAGCCCTAATAAATCAACAACAAGCAAAAAGGTTCCTTGCAACAGCACATATTGCGAACAACAACAGCGGTGCTCTACACCAAGTAGTGATTGTCGTTACAGTATCAACTATCTTTCTGCTAACACTTCATCTTCTGGAATCGTAGTAGAGGACATTTTGCACTTGACTACTGATGATGCTAAACTAAAAGGTGTCGAGGCGCCGATAGCCTTTGGGTGTGGTAGGTATCAGACTGGTATATTTTTAAGTGGGGCAGCTCCCAATGGTCTATTAGGGCTTGGTATGGATGGTGTATCCATTCCTAGCATGTTAGCAAAACATGGGCTTGCTTCAGATTCTTTTTCCATGTGTTTTGGAATTGATGGAAGTGGGAGAATCAGATTTGGTGATAATGGAAGTGTAGACCAACCAGAAACACCATTCTATGTCAGAGATAAATATCCAACTTACAACATTACTGTTACTCAAATAGCCATTAATAAAAGTGTTGCTGATCTTGATTTCTATGCAATTTGGGATTCTGGTACCTCATTTACGTACCTAAATGATCCAGCTTACACCCAGATTTCCAAGAGTTTCAACAGTGCCATCAAAGATTATCGGGATACCAATAATTCTGATCTCCCTTTTGAATATTGTTATACAGTCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0043170 GO:0044238 GO:0044425 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

375

Amino Acids

41.21

Weight (kDa)

5.36

Isoelectric Point (pI)

29.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	109 - 288	4e-36	Xylanase inhibitor N-terminal
Asp	PF00026	109 - 357	5.4e-16	Eukaryotic aspartyl protease
TAXi_C	PF14541	308 - 374	6.7e-06	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17760 AT3G51330 AT3G51330 AT3G51330 AT3G51340 AT3G51340 AT3G51340 AT3G51340 AT3G51350
fragaria_vesca	FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190
malus_domestica	MD02G1124400.v1.1 MD02G1124500.v1.1 MD15G1238500.v1.1
prunus_persica	Prupe.7G173900_v2.0.a1
pyrus_communis	pycom02g09720
rosa_chinensis	RchiOBHm_Chr2g0098521 RchiOBHm_Chr2g0098531 RchiOBHm_Chr2g0098551 RchiOBHm_Chr2g0098601 RchiOBHm_Chr5g0032521
rosa_laevigata	RLG00000016804 RLG00000016805 RLG00000016809 RLG00000016811 RLG00000036276
rosa_roxburghii	Rroxscaffold_2G00143860 Rroxscaffold_2G00143910
rosa_rugosa	Rorug02G0073700
rosa_samantha	Rh2AG121000 Rh2AG121200 Rh2AG473700 Rh2BG124100 Rh2BG124200 Rh2BG124400 Rh2BG124600 Rh2BG124800 Rh2CG125600 Rh2CG125700 Rh2CG459400 Rh2DG126200 Rh2DG126700 Rh2DG126900 Rh5AG278400
rosa_wichuraiana	Rw0G004110 Rw2G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	998
AccB1I	GGYRCC	2 cut(s)	673, 998
AccI	GTMKAC	1 cut(s)	876
AciI	CCGC	4 cut(s)	179, 241, 266, 541
AclWI	GGATC	4 cut(s)	137, 150, 226, 1016
AcoI	YGGCCR	2 cut(s)	3, 250
AcsI	RAATTY	1 cut(s)	156
AcuI	CTGAAG	1 cut(s)	789
AcyI	GRCGYC	2 cut(s)	263, 674
AfaI	GTAC	2 cut(s)	1000, 1013
AfiI	CCNNNNNNNGG	4 cut(s)	139, 152, 184, 185
AgeI	ACCGGT	2 cut(s)	132, 225
AgsI	TTSAA	2 cut(s)	1054, 1106
AluBI	AGCT	5 cut(s)	23, 93, 175, 731, 1028
AluI	AGCT	5 cut(s)	23, 93, 175, 731, 1028
Alw21I	GWGCWC	2 cut(s)	177, 548
AlwI	GGATC	4 cut(s)	137, 150, 226, 1016
AoxI	GGCC	3 cut(s)	3, 238, 250
ApeKI	GCWGC	1 cut(s)	728
ApoI	RAATTY	1 cut(s)	156
AseI	ATTAAT	1 cut(s)	951
AsiGI	ACCGGT	2 cut(s)	132, 225
Asp718I	GGTACC	1 cut(s)	998
AspLEI	GCGC	2 cut(s)	308, 676
AspS9I	GGNCC	2 cut(s)	223, 238
AsuC2I	CCSGG	2 cut(s)	221, 236
AsuHPI	GGTGA	3 cut(s)	142, 209, 872
AvaII	GGWCC	1 cut(s)	223
BamHI	GGATCC	1 cut(s)	142
BanI	GGYRCC	2 cut(s)	673, 998
BanII	GRGCYC	1 cut(s)	177
Bbv12I	GWGCWC	2 cut(s)	177, 548
BbvI	GCAGC	1 cut(s)	740
BccI	CCATC	4 cut(s)	440, 755, 830, 1070
BceAI	ACGGC	2 cut(s)	298, 388
BciVI	GTATCC	3 cut(s)	370, 778, 1072
BcnI	CCSGG	2 cut(s)	221, 236
BfaI	CTAG	2 cut(s)	27, 777
BfmI	CTRYAG	1 cut(s)	472
BfoI	RGCGCY	2 cut(s)	309, 677
BfuI	GTATCC	3 cut(s)	370, 778, 1072
BglI	GCCNNNNNGGC	1 cut(s)	249
BisI	GCNGC	3 cut(s)	241, 266, 729
BlsI	GCNGC	3 cut(s)	242, 267, 730
Bme1390I	CCNGG	2 cut(s)	221, 236
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	223, 238
BmiI	GGNNCC	6 cut(s)	144, 224, 239, 507, 675, 1000
BmrFI	CCNGG	2 cut(s)	221, 236
BmsI	GCATC	1 cut(s)	640
BpuMI	CCSGG	2 cut(s)	221, 236
BsaAI	YACGTR	1 cut(s)	1011
BsaBI	GATNNNNATC	1 cut(s)	912
BsaHI	GRCGYC	2 cut(s)	263, 674
BsaJI	CCNNGG	3 cut(s)	235, 247, 350
BsaWI	WCCGGW	4 cut(s)	132, 152, 225, 297
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 152, 184, 185
Bse118I	RCCGGY	2 cut(s)	132, 225
Bse1I	ACTGG	3 cut(s)	14, 66, 712
Bse8I	GATNNNNATC	1 cut(s)	912
BseDI	CCNNGG	3 cut(s)	235, 247, 350
BseGI	GGATG	1 cut(s)	766
BseJI	GATNNNNATC	1 cut(s)	912
BseLI	CCNNNNNNNGG	4 cut(s)	139, 152, 184, 185
BseNI	ACTGG	3 cut(s)	14, 66, 712
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	1 cut(s)	740
BshFI	GGCC	3 cut(s)	5, 240, 252
BshNI	GGYRCC	2 cut(s)	673, 998
BshTI	ACCGGT	2 cut(s)	132, 225
BsiHKAI	GWGCWC	2 cut(s)	177, 548
BsiSI	CCGG	6 cut(s)	133, 153, 220, 226, 235, 298
BslFI	GGGAC	2 cut(s)	236, 358
BslI	CCNNNNNNNGG	4 cut(s)	139, 152, 184, 185
BsmFI	GGGAC	2 cut(s)	236, 358
BsnI	GGCC	3 cut(s)	5, 240, 252
Bsp1286I	GDGCHC	2 cut(s)	177, 548
Bsp143I	GATC	5 cut(s)	142, 231, 967, 1021, 1093
BspACI	CCGC	4 cut(s)	179, 241, 266, 541
BspANI	GGCC	3 cut(s)	5, 240, 252
BspLI	GGNNCC	6 cut(s)	144, 224, 239, 507, 675, 1000
BspPI	GGATC	4 cut(s)	137, 150, 226, 1016
BspT107I	GGYRCC	2 cut(s)	673, 998
BsrFI	RCCGGY	2 cut(s)	132, 225
BsrI	ACTGG	3 cut(s)	14, 66, 712
BssAI	RCCGGY	2 cut(s)	132, 225
BssECI	CCNNGG	3 cut(s)	235, 247, 350
BssMI	GATC	5 cut(s)	142, 231, 967, 1021, 1093
BssNI	GRCGYC	2 cut(s)	263, 674
BssT1I	CCWWGG	1 cut(s)	350
Bst4CI	ACNGT	4 cut(s)	575, 934, 1058, 1120
BstACI	GRCGYC	2 cut(s)	263, 674
BstAPI	GCANNNNNTGC	1 cut(s)	525
BstBAI	YACGTR	1 cut(s)	1011
BstC8I	GCNNGC	1 cut(s)	801
BstF5I	GGATG	1 cut(s)	766
BstH2I	RGCGCY	2 cut(s)	309, 677
BstHHI	GCGC	2 cut(s)	308, 676
BstKTI	GATC	5 cut(s)	145, 234, 970, 1024, 1096
BstMBI	GATC	5 cut(s)	142, 231, 967, 1021, 1093
BstMWI	GCNNNNNNNGC	3 cut(s)	249, 525, 680
BstNSI	RCATGY	1 cut(s)	784
BstSCI	CCNGG	2 cut(s)	219, 234
BstSFI	CTRYAG	1 cut(s)	472
BstSNI	TACGTA	1 cut(s)	1011
BstV1I	GCAGC	1 cut(s)	740
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuI	GTATCC	3 cut(s)	370, 778, 1072
BsuRI	GGCC	3 cut(s)	5, 240, 252
BtsCI	GGATG	1 cut(s)	766
BtsI	GCAGTG	1 cut(s)	391
BtsIMutI	CAGTG	2 cut(s)	391, 1063
Cac8I	GCNNGC	1 cut(s)	801
CfoI	GCGC	2 cut(s)	308, 676
Cfr10I	RCCGGY	2 cut(s)	132, 225
Cfr13I	GGNCC	2 cut(s)	223, 238
CseI	GACGC	1 cut(s)	271
Csp6I	GTAC	2 cut(s)	999, 1012
CspAI	ACCGGT	2 cut(s)	132, 225
CviAII	CATG	4 cut(s)	211, 781, 794, 820
CviQI	GTAC	2 cut(s)	999, 1012
DinI	GGCGCC	1 cut(s)	675
DpnI	GATC	5 cut(s)	144, 233, 969, 1023, 1095
DpnII	GATC	5 cut(s)	142, 231, 967, 1021, 1093
EaeI	YGGCCR	2 cut(s)	3, 250
Ecl136II	GAGCTC	1 cut(s)	175
Eco105I	TACGTA	1 cut(s)	1011
Eco130I	CCWWGG	1 cut(s)	350
Eco24I	GRGCYC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	789
EcoICRI	GAGCTC	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	350
EcoT38I	GRGCYC	1 cut(s)	177
EgeI	GGCGCC	1 cut(s)	675
EheI	GGCGCC	1 cut(s)	675
ErhI	CCWWGG	1 cut(s)	350
FaeI	CATG	4 cut(s)	214, 784, 797, 823
FaqI	GGGAC	2 cut(s)	236, 358
FatI	CATG	4 cut(s)	210, 780, 793, 819
FauI	CCCGC	1 cut(s)	186
FblI	GTMKAC	1 cut(s)	876
Fnu4HI	GCNGC	3 cut(s)	241, 266, 729
FokI	GGATG	1 cut(s)	773
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	3 cut(s)	241, 266, 729
FspBI	CTAG	2 cut(s)	27, 777
GlaI	GCGC	2 cut(s)	307, 675
GluI	GCNGC	3 cut(s)	241, 266, 729
HaeII	RGCGCY	2 cut(s)	309, 677
HaeIII	GGCC	3 cut(s)	5, 240, 252
HapII	CCGG	6 cut(s)	133, 153, 220, 226, 235, 298
HgaI	GACGC	1 cut(s)	271
HhaI	GCGC	2 cut(s)	308, 676
Hin1I	GRCGYC	2 cut(s)	263, 674
Hin1II	CATG	4 cut(s)	214, 784, 797, 823
Hin6I	GCGC	2 cut(s)	306, 674
HinP1I	GCGC	2 cut(s)	306, 674
HinfI	GANTC	6 cut(s)	214, 346, 612, 809, 849, 992
HpaII	CCGG	6 cut(s)	133, 153, 220, 226, 235, 298
HphI	GGTGA	3 cut(s)	142, 209, 872
Hpy166II	GTNNAC	2 cut(s)	280, 877
Hpy188I	TCNGA	8 cut(s)	90, 142, 445, 705, 808, 854, 905, 1093
Hpy188III	TCNNGA	4 cut(s)	106, 609, 971, 1076
Hpy8I	GTNNAC	2 cut(s)	280, 877
Hpy99I	CGWCG	2 cut(s)	262, 265
HpyAV	CCTTC	1 cut(s)	421
HpyCH4III	ACNGT	4 cut(s)	575, 934, 1058, 1120
HpyCH4IV	ACGT	1 cut(s)	1010
HpyCH4V	TGCA	5 cut(s)	18, 322, 513, 634, 983
HpyF10VI	GCNNNNNNNGC	3 cut(s)	249, 525, 680
HpySE526I	ACGT	1 cut(s)	1010
Hsp92I	GRCGYC	2 cut(s)	263, 674
Hsp92II	CATG	4 cut(s)	214, 784, 797, 823
HspAI	GCGC	2 cut(s)	306, 674
KasI	GGCGCC	1 cut(s)	673
KpnI	GGTACC	1 cut(s)	1002
Kzo9I	GATC	5 cut(s)	142, 231, 967, 1021, 1093
LmnI	GCTCC	3 cut(s)	90, 180, 736
Lsp1109I	GCAGC	1 cut(s)	740
LweI	GCATC	1 cut(s)	640
MaeI	CTAG	2 cut(s)	27, 777
MaeII	ACGT	1 cut(s)	1010
MaeIII	GTNAC	5 cut(s)	57, 95, 148, 569, 934
MalI	GATC	5 cut(s)	144, 233, 969, 1023, 1095
MboI	GATC	5 cut(s)	142, 231, 967, 1021, 1093
MboII	GAAGA	1 cut(s)	597
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	2 cut(s)	177, 548
MluCI	AATT	4 cut(s)	156, 831, 984, 1087
Mly113I	GGCGCC	1 cut(s)	674
MlyI	GAGTC	2 cut(s)	208, 340
MmeI	TCCRAC	3 cut(s)	68, 120, 941
MnlI	CCTC	7 cut(s)	60, 63, 257, 445, 616, 664, 1012
MseI	TTAA	3 cut(s)	435, 719, 951
MspA1I	CMGCKG	1 cut(s)	541
MspI	CCGG	6 cut(s)	133, 153, 220, 226, 235, 298
MspR9I	CCNGG	2 cut(s)	221, 236
MwoI	GCNNNNNNNGC	3 cut(s)	249, 525, 680
NarI	GGCGCC	1 cut(s)	674
NciI	CCSGG	2 cut(s)	221, 236
NdeII	GATC	5 cut(s)	142, 231, 967, 1021, 1093
NlaIII	CATG	4 cut(s)	214, 784, 797, 823
NlaIV	GGNNCC	6 cut(s)	144, 224, 239, 507, 675, 1000
NmeAIII	GCCGAG	2 cut(s)	141, 228
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	784
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PfeI	GAWTC	4 cut(s)	612, 809, 849, 992
PinAI	ACCGGT	2 cut(s)	132, 225
PkrI	GCNGC	3 cut(s)	242, 267, 730
PleI	GAGTC	2 cut(s)	208, 340
PluTI	GGCGCC	1 cut(s)	677
PpsI	GAGTC	2 cut(s)	208, 340
Ppu21I	YACGTR	1 cut(s)	1011
PshBI	ATTAAT	1 cut(s)	951
Psp124BI	GAGCTC	1 cut(s)	177
PspN4I	GGNNCC	6 cut(s)	144, 224, 239, 507, 675, 1000
PspPI	GGNCC	2 cut(s)	223, 238
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	2 cut(s)	1000, 1013
RsaNI	GTAC	2 cut(s)	999, 1012
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	435, 719, 951
SatI	GCNGC	3 cut(s)	241, 266, 729
Sau3AI	GATC	5 cut(s)	142, 231, 967, 1021, 1093
Sau96I	GGNCC	2 cut(s)	223, 238
SchI	GAGTC	2 cut(s)	208, 340
ScrFI	CCNGG	2 cut(s)	221, 236
SduI	GDGCHC	2 cut(s)	177, 548
SfaNI	GCATC	1 cut(s)	640
SfcI	CTRYAG	1 cut(s)	472
SfoI	GGCGCC	1 cut(s)	675
SinI	GGWCC	1 cut(s)	223
SnaBI	TACGTA	1 cut(s)	1011
Sse9I	AATT	4 cut(s)	156, 831, 984, 1087
SsiI	CCGC	4 cut(s)	179, 241, 266, 541
SspDI	GGCGCC	1 cut(s)	673
SspI	AATATT	2 cut(s)	200, 1109
SspMI	CTAG	2 cut(s)	27, 777
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	219, 234
StyI	CCWWGG	1 cut(s)	350
TaaI	ACNGT	4 cut(s)	575, 934, 1058, 1120
TaiI	ACGT	1 cut(s)	1013
TaqI	TCGA	2 cut(s)	114, 669
TasI	AATT	4 cut(s)	156, 831, 984, 1087
TauI	GCSGC	2 cut(s)	243, 268
TfiI	GAWTC	4 cut(s)	612, 809, 849, 992
Tru1I	TTAA	3 cut(s)	435, 719, 951
Tru9I	TTAA	3 cut(s)	435, 719, 951
TscAI	CASTG	2 cut(s)	391, 1063
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	591
TspRI	CASTG	2 cut(s)	391, 1063
VpaK11BI	GGWCC	1 cut(s)	223
VspI	ATTAAT	1 cut(s)	951
XapI	RAATTY	1 cut(s)	156
XceI	RCATGY	1 cut(s)	784
XmiI	GTMKAC	1 cut(s)	876
XspI	CTAG	2 cut(s)	27, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.