Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001552

Physical Location & Seq

Genomic Coordinates Reverse (-)

69269816 .. 69281247

Gene Structure 11432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG473700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGATAGTTGAGATCTTATCAAGGACGATCGATTCAGCTCTTGCAGGATCCAAAGCACCATACAAATTCAAAGCTCTTGAGAAGTTGCTGAAGGATTTTGCTAGCAGATTTGCTACTGGAAATGAAGTGTGTGGTAGGAATCAAACTGGTATATTGTTAAGTGGGGCAGCTCCCAATGGTCTATTAGGGCTTGGTATGGATGATGTATCCATTCCTAGCATGTTAGCAAAACAGGGGCTTGCTTCAAATTCTTTTTCCATGTGTTTTGGAATTAACGGAAGTGGTAGGATCAGATTTGGTGATAATGGAAGTGTAGACCAACCAGAAACACCATTCTATGTCAGAGATAAATATCCAACTTACAACATTACGGTTACTCAAATAGCCGTTGGAAAAAGTGTTGCTGATCTTGAATTCTATGCAATTTGGGACTCTGGTACCTCATTTACGTACCTAAATGATCCAGCTTACACCCATATTTCTAAGAGTTTCAACAACGCCATCAAAGATAAGCGGGCTACAGATAATTTTGATCTTCCTTTTGAATATTGTTTTACAGTCAGCAAGGTTTCTGATGCAAATCCGAAAGAGAAGGGGAAAGGAAAAATGTTTCCTGAGGCTAGGGCAGATGAGGTTAGTGGTTTAGATGAAGAGGGTTTACATGACATAGACATTCTTGACTACATGCAGTCTTTTGGTTGCATGCGTAGTCAAGAAAAGAGAGTTGAAGATGAGTTTGAGGAGGATGATAGTGAAAAGGATGAAGACTACATACCTGCTTTTGAGGATGAGGATTATGATTATGGGATTGTTGATGATGAAGATGAAGTGTTAGATGAACAGAATATAGGGTTGGAGGTTAATGCAATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0043170 GO:0044238 GO:0044425 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

291

Amino Acids

32.29

Weight (kDa)

4.31

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	44 - 101	4e-08	Xylanase inhibitor N-terminal
TAXi_C	PF14541	121 - 192	3.8e-07	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17760 AT3G51330 AT3G51330 AT3G51330 AT3G51340 AT3G51340 AT3G51340 AT3G51340 AT3G51350
fragaria_vesca	FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190
malus_domestica	MD02G1124400.v1.1 MD02G1124500.v1.1 MD15G1238500.v1.1
prunus_persica	Prupe.7G173900_v2.0.a1
pyrus_communis	pycom02g09720
rosa_chinensis	RchiOBHm_Chr2g0098521 RchiOBHm_Chr2g0098531 RchiOBHm_Chr2g0098551 RchiOBHm_Chr2g0098601 RchiOBHm_Chr5g0032521
rosa_laevigata	RLG00000016804 RLG00000016805 RLG00000016809 RLG00000016811 RLG00000036276
rosa_roxburghii	Rroxscaffold_2G00143860 Rroxscaffold_2G00143910
rosa_rugosa	Rorug02G0073700
rosa_samantha	Rh2AG121000 Rh2AG121200 Rh2AG473700 Rh2BG124100 Rh2BG124200 Rh2BG124400 Rh2BG124600 Rh2BG124800 Rh2CG125600 Rh2CG125700 Rh2CG459400 Rh2DG126200 Rh2DG126700 Rh2DG126900 Rh5AG278400
rosa_wichuraiana	Rw0G004110 Rw2G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	784
Acc65I	GGTACC	1 cut(s)	437
AccB1I	GGYRCC	1 cut(s)	437
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	1 cut(s)	514
AclWI	GGATC	4 cut(s)	42, 55, 296, 455
AcsI	RAATTY	3 cut(s)	65, 247, 413
AcuI	CTGAAG	1 cut(s)	110
AfaI	GTAC	2 cut(s)	439, 452
AgsI	TTSAA	6 cut(s)	70, 246, 413, 493, 545, 728
AjuI	GAANNNNNNNTTGG	2 cut(s)	836, 868
AluBI	AGCT	4 cut(s)	38, 74, 170, 467
AluI	AGCT	4 cut(s)	38, 74, 170, 467
AlwI	GGATC	4 cut(s)	42, 55, 296, 455
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	3 cut(s)	65, 247, 413
Asp718I	GGTACC	1 cut(s)	437
AsuHPI	GGTGA	1 cut(s)	311
AsuNHI	GCTAGC	1 cut(s)	101
AxyI	CCTNAGG	1 cut(s)	615
BaeI	ACNNNNGTAYC	2 cut(s)	421, 454
BamHI	GGATCC	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	437
BarI	GAAGNNNNNNTAC	4 cut(s)	642, 674, 756, 788
BbsI	GAAGAC	1 cut(s)	771
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	1 cut(s)	509
BceAI	ACGGC	1 cut(s)	371
BciVI	GTATCC	1 cut(s)	217
BfaI	CTAG	3 cut(s)	102, 216, 621
BfmI	CTRYAG	1 cut(s)	519
BfuAI	ACCTGC	1 cut(s)	784
BfuI	GTATCC	1 cut(s)	217
BglII	AGATCT	1 cut(s)	12
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
BmiI	GGNNCC	2 cut(s)	49, 439
BmsI	GCATC	1 cut(s)	565
BmtI	GCTAGC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	771
BpuEI	CTTGAG	1 cut(s)	98
Bsa29I	ATCGAT	1 cut(s)	30
BsaAI	YACGTR	1 cut(s)	450
BsaBI	GATNNNNATC	2 cut(s)	351, 579
Bse1I	ACTGG	2 cut(s)	121, 151
Bse21I	CCTNAGG	1 cut(s)	615
Bse8I	GATNNNNATC	2 cut(s)	351, 579
BseCI	ATCGAT	1 cut(s)	30
BseGI	GGATG	4 cut(s)	205, 751, 766, 793
BseJI	GATNNNNATC	2 cut(s)	351, 579
BseMII	CTCAG	1 cut(s)	606
BseNI	ACTGG	2 cut(s)	121, 151
BseRI	GAGGAG	1 cut(s)	755
BseXI	GCAGC	1 cut(s)	179
Bsh1285I	CGRYCG	1 cut(s)	30
BshNI	GGYRCC	1 cut(s)	437
BshVI	ATCGAT	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	443
Bsp143I	GATC	7 cut(s)	12, 27, 47, 288, 406, 460, 532
BspACI	CCGC	1 cut(s)	514
BspCNI	CTCAG	1 cut(s)	607
BspDI	ATCGAT	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	49, 439
BspMI	ACCTGC	1 cut(s)	784
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	4 cut(s)	42, 55, 296, 455
BspT107I	GGYRCC	1 cut(s)	437
BsrI	ACTGG	2 cut(s)	121, 151
BssMI	GATC	7 cut(s)	12, 27, 47, 288, 406, 460, 532
Bst4CI	ACNGT	2 cut(s)	373, 559
Bst6I	CTCTTC	1 cut(s)	645
BstBAI	YACGTR	1 cut(s)	450
BstC8I	GCNNGC	4 cut(s)	103, 240, 516, 704
BstDEI	CTNAG	2 cut(s)	483, 615
BstF5I	GGATG	4 cut(s)	205, 751, 766, 793
BstKTI	GATC	7 cut(s)	15, 30, 50, 291, 409, 463, 535
BstMBI	GATC	7 cut(s)	12, 27, 47, 288, 406, 460, 532
BstMCI	CGRYCG	1 cut(s)	30
BstNSI	RCATGY	3 cut(s)	223, 688, 706
BstSFI	CTRYAG	1 cut(s)	519
BstSNI	TACGTA	1 cut(s)	450
BstV1I	GCAGC	1 cut(s)	179
BstV2I	GAAGAC	1 cut(s)	771
BstX2I	RGATCY	2 cut(s)	12, 47
BstYI	RGATCY	2 cut(s)	12, 47
Bsu15I	ATCGAT	1 cut(s)	30
Bsu36I	CCTNAGG	1 cut(s)	615
BsuI	GTATCC	1 cut(s)	217
BsuTUI	ATCGAT	1 cut(s)	30
BtsCI	GGATG	4 cut(s)	205, 751, 766, 793
BveI	ACCTGC	1 cut(s)	784
Cac8I	GCNNGC	4 cut(s)	103, 240, 516, 704
ClaI	ATCGAT	1 cut(s)	30
Csp6I	GTAC	2 cut(s)	438, 451
CviAII	CATG	5 cut(s)	220, 259, 662, 685, 703
CviJI	RGCY	9 cut(s)	38, 74, 170, 190, 238, 386, 467, 518, 620
CviKI_1	RGCY	9 cut(s)	38, 74, 170, 190, 238, 386, 467, 518, 620
CviQI	GTAC	2 cut(s)	438, 451
DdeI	CTNAG	2 cut(s)	483, 615
DpnI	GATC	7 cut(s)	14, 29, 49, 290, 408, 462, 534
DpnII	GATC	7 cut(s)	12, 27, 47, 288, 406, 460, 532
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
Eco105I	TACGTA	1 cut(s)	450
Eco57I	CTGAAG	1 cut(s)	110
Eco81I	CCTNAGG	1 cut(s)	615
EcoRI	GAATTC	1 cut(s)	413
FaeI	CATG	5 cut(s)	223, 262, 665, 688, 706
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	5 cut(s)	219, 258, 661, 684, 702
FauI	CCCGC	1 cut(s)	507
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	4 cut(s)	212, 758, 773, 800
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	3 cut(s)	102, 216, 621
GluI	GCNGC	1 cut(s)	168
Hin1II	CATG	5 cut(s)	223, 262, 665, 688, 706
HinfI	GANTC	3 cut(s)	32, 139, 431
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	316, 659
Hpy188I	TCNGA	4 cut(s)	293, 344, 574, 585
Hpy188III	TCNNGA	5 cut(s)	77, 410, 614, 677, 713
Hpy8I	GTNNAC	2 cut(s)	316, 659
HpyAV	CCTTC	2 cut(s)	85, 586
HpyCH4III	ACNGT	2 cut(s)	373, 559
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	6 cut(s)	44, 422, 578, 688, 702, 866
HpyF3I	CTNAG	2 cut(s)	483, 615
HpySE526I	ACGT	1 cut(s)	449
Hsp92II	CATG	5 cut(s)	223, 262, 665, 688, 706
KpnI	GGTACC	1 cut(s)	441
Kzo9I	GATC	7 cut(s)	12, 27, 47, 288, 406, 460, 532
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	9 cut(s)	30, 102, 132, 218, 336, 420, 477, 627, 789
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	3 cut(s)	102, 216, 621
MaeII	ACGT	1 cut(s)	449
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	7 cut(s)	14, 29, 49, 290, 408, 462, 534
MboI	GATC	7 cut(s)	12, 27, 47, 288, 406, 460, 532
MboII	GAAGA	5 cut(s)	527, 662, 740, 776, 833
MfeI	CAATTG	1 cut(s)	867
MflI	RGATCY	2 cut(s)	12, 47
MluCI	AATT	7 cut(s)	65, 247, 270, 413, 423, 526, 867
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	3 cut(s)	370, 380, 834
MnlI	CCTC	9 cut(s)	451, 610, 625, 646, 733, 736, 778, 784, 850
MseI	TTAA	4 cut(s)	158, 273, 861, 874
MunI	CAATTG	1 cut(s)	867
NdeII	GATC	7 cut(s)	12, 27, 47, 288, 406, 460, 532
NheI	GCTAGC	1 cut(s)	101
NlaIII	CATG	5 cut(s)	223, 262, 665, 688, 706
NlaIV	GGNNCC	2 cut(s)	49, 439
NspI	RCATGY	3 cut(s)	223, 688, 706
PaeI	GCATGC	1 cut(s)	706
PfeI	GAWTC	2 cut(s)	32, 139
PkrI	GCNGC	1 cut(s)	169
Ple19I	CGATCG	1 cut(s)	30
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
Ppu21I	YACGTR	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	49, 439
PsuI	RGATCY	2 cut(s)	12, 47
PvuI	CGATCG	1 cut(s)	30
RsaI	GTAC	2 cut(s)	439, 452
RsaNI	GTAC	2 cut(s)	438, 451
SaqAI	TTAA	4 cut(s)	158, 273, 861, 874
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	7 cut(s)	12, 27, 47, 288, 406, 460, 532
SchI	GAGTC	1 cut(s)	425
SfaNI	GCATC	1 cut(s)	565
SfcI	CTRYAG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SnaBI	TACGTA	1 cut(s)	450
SphI	GCATGC	1 cut(s)	706
Sse9I	AATT	7 cut(s)	65, 247, 270, 413, 423, 526, 867
SsiI	CCGC	1 cut(s)	514
SspI	AATATT	1 cut(s)	548
SspMI	CTAG	3 cut(s)	102, 216, 621
TaaI	ACNGT	2 cut(s)	373, 559
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	1 cut(s)	30
TasI	AATT	7 cut(s)	65, 247, 270, 413, 423, 526, 867
TfiI	GAWTC	2 cut(s)	32, 139
Tru1I	TTAA	4 cut(s)	158, 273, 861, 874
Tru9I	TTAA	4 cut(s)	158, 273, 861, 874
TseI	GCWGC	1 cut(s)	167
TspDTI	ATGAA	6 cut(s)	138, 663, 777, 834, 840, 852
TspGWI	ACGGA	1 cut(s)	291
XapI	RAATTY	3 cut(s)	65, 247, 413
XceI	RCATGY	3 cut(s)	223, 688, 706
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	3 cut(s)	102, 216, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.