Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001552

Physical Location & Seq

Genomic Coordinates Reverse (-)

62250321 .. 62256717

Gene Structure 6397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG459400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGTCGAGGAGACTCCGGCTGAGGCGCAAGCAAGCTTGATCGACCCTGTGATGCGGTGGGGGATAGGCCGGCCGCCGAAGACGGAGGGGAAGGCTATATTGGCTTGGGTTTGGGTATGGTGTGGTAGGAATCAAACTGGTATATTGTTAAGTGGGGCAGCTCCCAATGGTCTATTAGGGCTTGGTATGGATGATGTATCCATTCCTAGCATGTTAGCAAAACAGGGGCTTGCTTCAAATTCTTTTTCCATGTGTTTTGGAATTAACGGAAGTGGTAGGATCAGATTTGGTGATAATGGAAGTGTAGACCAACCAGAAACACCATTCTATGTCAGAGATAAATATCCAACTTACAACATTACGGTTACTCAAATAGCCGTTGGAAAAAGTGTTGCTGATCTTGAATTCTATGCAATTTGGGACTCTGGTACCTCATTTACGTACCTAAATGATCCAGCTTACACCCATATTTCTAAGAGTTTCAACAACGCCATCAAAGATAAGCGGGCTACAGATAATTTTGATCTTCCTTTTGAATATTGTTTTACAGTCAGACATGCTCTTACTGATGCTGAGGAAGCAATTAGGCTCAGAAACACTAATGTCAAGGTAGTACTAATTCTTGAACATGTTCTTGTTCTTAGCTGGGATTTGTTTGCAAAGTTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0043170 GO:0044238 GO:0044425 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

223

Amino Acids

24.74

Weight (kDa)

5.26

Isoelectric Point (pI)

31.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	40 - 98	1.6e-08	Xylanase inhibitor N-terminal
TAXi_C	PF14541	118 - 187	5.7e-07	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17760 AT3G51330 AT3G51330 AT3G51330 AT3G51340 AT3G51340 AT3G51340 AT3G51340 AT3G51350
fragaria_vesca	FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190
malus_domestica	MD02G1124400.v1.1 MD02G1124500.v1.1 MD15G1238500.v1.1
prunus_persica	Prupe.7G173900_v2.0.a1
pyrus_communis	pycom02g09720
rosa_chinensis	RchiOBHm_Chr2g0098521 RchiOBHm_Chr2g0098531 RchiOBHm_Chr2g0098551 RchiOBHm_Chr2g0098601 RchiOBHm_Chr5g0032521
rosa_laevigata	RLG00000016804 RLG00000016805 RLG00000016809 RLG00000016811 RLG00000036276
rosa_roxburghii	Rroxscaffold_2G00143860 Rroxscaffold_2G00143910
rosa_rugosa	Rorug02G0073700
rosa_samantha	Rh2AG121000 Rh2AG121200 Rh2AG473700 Rh2BG124100 Rh2BG124200 Rh2BG124400 Rh2BG124600 Rh2BG124800 Rh2CG125600 Rh2CG125700 Rh2CG459400 Rh2DG126200 Rh2DG126700 Rh2DG126900 Rh5AG278400
rosa_wichuraiana	Rw0G004110 Rw2G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	428
AccB1I	GGYRCC	1 cut(s)	428
AccI	GTMKAC	1 cut(s)	306
AciI	CCGC	3 cut(s)	55, 74, 505
AclWI	GGATC	2 cut(s)	287, 446
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	2 cut(s)	238, 404
AfaI	GTAC	3 cut(s)	430, 443, 615
AflIII	ACRYGT	1 cut(s)	628
AgsI	TTSAA	6 cut(s)	237, 404, 484, 536, 626, 668
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	4 cut(s)	36, 161, 458, 645
AluI	AGCT	4 cut(s)	36, 161, 458, 645
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	2 cut(s)	287, 446
AoxI	GGCC	2 cut(s)	67, 71
ApeKI	GCWGC	1 cut(s)	158
ApoI	RAATTY	2 cut(s)	238, 404
Asp700I	GAANNNNTTC	1 cut(s)	630
Asp718I	GGTACC	1 cut(s)	428
AspLEI	GCGC	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	302
BaeI	ACNNNNGTAYC	2 cut(s)	412, 445
BanI	GGYRCC	1 cut(s)	428
BbsI	GAAGAC	1 cut(s)	86
BbvCI	CCTCAGC	2 cut(s)	21, 573
BbvI	GCAGC	1 cut(s)	170
BccI	CCATC	1 cut(s)	500
BceAI	ACGGC	1 cut(s)	362
BciVI	GTATCC	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	207
BfmI	CTRYAG	1 cut(s)	510
BfuI	GTATCC	1 cut(s)	208
BisI	GCNGC	2 cut(s)	74, 159
BlsI	GCNGC	2 cut(s)	75, 160
BmcAI	AGTACT	1 cut(s)	615
BmiI	GGNNCC	1 cut(s)	430
BmsI	GCATC	2 cut(s)	42, 559
BpiI	GAAGAC	1 cut(s)	86
Bpu10I	CCTNAGC	2 cut(s)	21, 573
BsaAI	YACGTR	1 cut(s)	441
BsaBI	GATNNNNATC	1 cut(s)	342
Bse118I	RCCGGY	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	142
Bse8I	GATNNNNATC	1 cut(s)	342
BseGI	GGATG	1 cut(s)	196
BseJI	GATNNNNATC	1 cut(s)	342
BseMII	CTCAG	3 cut(s)	12, 564, 604
BseNI	ACTGG	1 cut(s)	142
BseRI	GAGGAG	1 cut(s)	23
BseX3I	CGGCCG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	170
BseYI	CCCAGC	1 cut(s)	645
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	2 cut(s)	69, 73
BshNI	GGYRCC	1 cut(s)	428
BsiEI	CGRYCG	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	17, 70
BslFI	GGGAC	1 cut(s)	434
BsmAI	GTCTC	1 cut(s)	5
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	2 cut(s)	69, 73
Bsp143I	GATC	5 cut(s)	39, 279, 397, 451, 523
BspACI	CCGC	3 cut(s)	55, 74, 505
BspANI	GGCC	2 cut(s)	69, 73
BspCNI	CTCAG	3 cut(s)	13, 565, 603
BspLI	GGNNCC	1 cut(s)	430
BspPI	GGATC	2 cut(s)	287, 446
BspT107I	GGYRCC	1 cut(s)	428
BsrFI	RCCGGY	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	69
BssMI	GATC	5 cut(s)	39, 279, 397, 451, 523
Bst4CI	ACNGT	2 cut(s)	364, 550
BstBAI	YACGTR	1 cut(s)	441
BstC8I	GCNNGC	5 cut(s)	30, 34, 71, 231, 507
BstDEI	CTNAG	5 cut(s)	21, 474, 573, 590, 641
BstF5I	GGATG	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	5 cut(s)	42, 282, 400, 454, 526
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	5 cut(s)	39, 279, 397, 451, 523
BstMCI	CGRYCG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 578
BstNSI	RCATGY	3 cut(s)	214, 560, 632
BstSFI	CTRYAG	1 cut(s)	510
BstSNI	TACGTA	1 cut(s)	441
BstV1I	GCAGC	1 cut(s)	170
BstV2I	GAAGAC	1 cut(s)	86
BstZI	CGGCCG	1 cut(s)	71
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	69, 73
BtsCI	GGATG	1 cut(s)	196
Cac8I	GCNNGC	5 cut(s)	30, 34, 71, 231, 507
CfoI	GCGC	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	69
Csp6I	GTAC	3 cut(s)	429, 442, 614
CviAII	CATG	4 cut(s)	211, 250, 557, 629
CviQI	GTAC	3 cut(s)	429, 442, 614
DdeI	CTNAG	5 cut(s)	21, 474, 573, 590, 641
DpnI	GATC	5 cut(s)	41, 281, 399, 453, 525
DpnII	GATC	5 cut(s)	39, 279, 397, 451, 523
EaeI	YGGCCR	1 cut(s)	71
EagI	CGGCCG	1 cut(s)	71
EclXI	CGGCCG	1 cut(s)	71
Eco105I	TACGTA	1 cut(s)	441
Eco52I	CGGCCG	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	404
FaeI	CATG	4 cut(s)	214, 253, 560, 632
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	4 cut(s)	210, 249, 556, 628
FauI	CCCGC	1 cut(s)	498
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	2 cut(s)	74, 159
FokI	GGATG	1 cut(s)	203
FseI	GGCCGGCC	1 cut(s)	73
Fsp4HI	GCNGC	2 cut(s)	74, 159
FspBI	CTAG	1 cut(s)	207
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	2 cut(s)	74, 159
GsaI	CCCAGC	1 cut(s)	649
HaeIII	GGCC	2 cut(s)	69, 73
HapII	CCGG	2 cut(s)	17, 70
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	4 cut(s)	214, 253, 560, 632
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	3 cut(s)	13, 130, 422
HpaII	CCGG	2 cut(s)	17, 70
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	4 cut(s)	284, 335, 554, 593
Hpy188III	TCNNGA	2 cut(s)	401, 623
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	364, 550
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	2 cut(s)	413, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 578
HpyF3I	CTNAG	5 cut(s)	21, 474, 573, 590, 641
HpySE526I	ACGT	1 cut(s)	440
Hsp92II	CATG	4 cut(s)	214, 253, 560, 632
HspAI	GCGC	1 cut(s)	26
KpnI	GGTACC	1 cut(s)	432
KroI	GCCGGC	1 cut(s)	69
KroNI	GCCGGC	1 cut(s)	71
Kzo9I	GATC	5 cut(s)	39, 279, 397, 451, 523
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	9 cut(s)	30, 60, 83, 123, 209, 327, 411, 468, 631
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	2 cut(s)	42, 559
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	440
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	5 cut(s)	41, 281, 399, 453, 525
MboI	GATC	5 cut(s)	39, 279, 397, 451, 523
MboII	GAAGA	2 cut(s)	91, 518
MluCI	AATT	7 cut(s)	238, 261, 404, 414, 517, 582, 618
MlyI	GAGTC	2 cut(s)	7, 416
MmeI	TCCRAC	2 cut(s)	361, 371
MnlI	CCTC	4 cut(s)	16, 79, 442, 568
MroNI	GCCGGC	1 cut(s)	69
MroXI	GAANNNNTTC	1 cut(s)	630
MseI	TTAA	2 cut(s)	149, 264
MspI	CCGG	2 cut(s)	17, 70
MwoI	GCNNNNNNNGC	2 cut(s)	101, 578
NaeI	GCCGGC	1 cut(s)	71
NdeII	GATC	5 cut(s)	39, 279, 397, 451, 523
NgoMIV	GCCGGC	1 cut(s)	69
NlaIII	CATG	4 cut(s)	214, 253, 560, 632
NlaIV	GGNNCC	1 cut(s)	430
NspI	RCATGY	3 cut(s)	214, 560, 632
PciI	ACATGT	1 cut(s)	628
PdiI	GCCGGC	1 cut(s)	71
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	1 cut(s)	130
PkrI	GCNGC	2 cut(s)	75, 160
PleI	GAGTC	2 cut(s)	7, 416
PpsI	GAGTC	2 cut(s)	7, 416
Ppu21I	YACGTR	1 cut(s)	441
PscI	ACATGT	1 cut(s)	628
PspFI	CCCAGC	1 cut(s)	645
PspN4I	GGNNCC	1 cut(s)	430
RigI	GGCCGGCC	1 cut(s)	73
RsaI	GTAC	3 cut(s)	430, 443, 615
RsaNI	GTAC	3 cut(s)	429, 442, 614
SaqAI	TTAA	2 cut(s)	149, 264
SatI	GCNGC	2 cut(s)	74, 159
Sau3AI	GATC	5 cut(s)	39, 279, 397, 451, 523
ScaI	AGTACT	1 cut(s)	615
SchI	GAGTC	2 cut(s)	7, 416
SetI	ASST	8 cut(s)	38, 163, 434, 443, 447, 460, 612, 647
SfaNI	GCATC	2 cut(s)	42, 559
SfcI	CTRYAG	1 cut(s)	510
SnaBI	TACGTA	1 cut(s)	441
Sse9I	AATT	7 cut(s)	238, 261, 404, 414, 517, 582, 618
SsiI	CCGC	3 cut(s)	55, 74, 505
SspI	AATATT	1 cut(s)	539
SspMI	CTAG	1 cut(s)	207
TaaI	ACNGT	2 cut(s)	364, 550
TaiI	ACGT	1 cut(s)	443
TaqI	TCGA	2 cut(s)	6, 42
TasI	AATT	7 cut(s)	238, 261, 404, 414, 517, 582, 618
TatI	WGTACW	1 cut(s)	613
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	2 cut(s)	149, 264
Tru9I	TTAA	2 cut(s)	149, 264
TseI	GCWGC	1 cut(s)	158
TspGWI	ACGGA	2 cut(s)	98, 282
XapI	RAATTY	2 cut(s)	238, 404
XceI	RCATGY	3 cut(s)	214, 560, 632
XmiI	GTMKAC	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	1 cut(s)	207
ZrmI	AGTACT	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.