Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001552

Physical Location & Seq

Genomic Coordinates Forward (+)

10998276 .. 11000819

Gene Structure 2544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47334

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGGCCGCCTGGACTGGCAGAGCTTCTAGTAGCAACTCTACTCTCTTGCCTTTGTTAGTGATTTTCGTGTTGGGTTTGGCTTGTCGGAGCTGTGACGGGTTCGGGACGTTCGGGTTTAATTTCCACCACCGGTTCTCGGATCCCGTCACCGGAATTCTCGGCTACGATGAACTCCCACAAAAGGGGAGTCCTGAATATTACGCTGCCATAACCCACCGTGACCGGTTGATCCGGGGCCGCCACCTCGGCGAAACGAAGACGCCGCTTACTTTCGTTTACGGCAACGAGACTTACCGGATTCCCGCTTTTGGACACTTGCATTATGCGAATGTTTCTGTTGGGACTCCAAGGACTTCGTATCTTGTGGCTTTGGATACAGGCAGTGATTTATTGTGGTTGCCGTGTGATTGTATCAGTTGTGTGAAGGGGGTTGATACATCACATGGAGAGTTGGATTTTGACATTTACAGCCCGAATAAATCAACAACAAGCAAAAAGGTTCCTTGCAACAGCACATATTGCGAACAACAACAGCTGTGCTCTTCACCAAGTAGTGATTGTCCTTATTTTATTAACTATCTTTCTGCTAGCACTTCATCTTCTGGAATCGTAGTAGAGGACGTTTTGCACTTGACTACTGATGATGCTAAACTAAAAGGTGTCAAGGCGCCGATAGCCTTTGGGTGTGGTAGGTATCAGACTGGTACATTTTTAAGTGGGGCAGCTCCCAATGGTTTATTAGGGCTTGGTATGGATGGTGTATCCATTCCTAGCATGTTAGCAAAACAGGGGCTTGCTTCAAATTCTTTTTCCATGTGTTTTGGAATTAACGGAACTGGTAGGATCAGATTTGGTGATAATGGAAGTGTAGACCAACCAGAAACACCATTCTATGTCGGAGATAAATATCCAACTTACAACATTACTGTTACTCAAATAGCCATTAATAAAAGTGTTGCTGATCTTGATTTCTATGCGATTTGGGATTCTGGTACCTCATTTACGTACCTAAATGATCCAGCTTACACCCAGATTTCTAATAGTTTCAACAGCGCCATCAAAGATAAGCGGGCTACCGATAATTCTGATCTCCCTTTTGAATATTGTTATACAGTCAGACCAAATCAAACGTTGAATTTGATAATGAAAGGCGGAAAGCAATATAATGTTATTCATCCACTTGTAGTTCTTTTGGATGAGGAAGGAAATATACTGTTCTATTGTCTGGGTGTTGTCAAAAGTGAAGATGTAAATATAATTGGGCGTGAGTATCTCTCTCTACACACTGCTGATCTCACAATTCATTTTTCATGCTCTGCTGTCATTCTGGAATGCTTACTTTCTATACCATTAATGCTCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0043170 GO:0044238 GO:0044425 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

454

Amino Acids

49.55

Weight (kDa)

5.54

Isoelectric Point (pI)

36.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	108 - 286	2.8e-37	Xylanase inhibitor N-terminal
Asp	PF00026	108 - 425	2.8e-18	Eukaryotic aspartyl protease
TAXi_C	PF14541	306 - 421	1.3e-08	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17760 AT3G51330 AT3G51330 AT3G51330 AT3G51340 AT3G51340 AT3G51340 AT3G51340 AT3G51350
fragaria_vesca	FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190 FvH4_1g11190
malus_domestica	MD02G1124400.v1.1 MD02G1124500.v1.1 MD15G1238500.v1.1
prunus_persica	Prupe.7G173900_v2.0.a1
pyrus_communis	pycom02g09720
rosa_chinensis	RchiOBHm_Chr2g0098521 RchiOBHm_Chr2g0098531 RchiOBHm_Chr2g0098551 RchiOBHm_Chr2g0098601 RchiOBHm_Chr5g0032521
rosa_laevigata	RLG00000016804 RLG00000016805 RLG00000016809 RLG00000016811 RLG00000036276
rosa_roxburghii	Rroxscaffold_2G00143860 Rroxscaffold_2G00143910
rosa_rugosa	Rorug02G0073700
rosa_samantha	Rh2AG121000 Rh2AG121200 Rh2AG473700 Rh2BG124100 Rh2BG124200 Rh2BG124400 Rh2BG124600 Rh2BG124800 Rh2CG125600 Rh2CG125700 Rh2CG459400 Rh2DG126200 Rh2DG126700 Rh2DG126900 Rh5AG278400
rosa_wichuraiana	Rw0G004110 Rw2G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	992
AccB1I	GGYRCC	2 cut(s)	667, 992
AccI	GTMKAC	1 cut(s)	870
AciI	CCGC	6 cut(s)	6, 238, 263, 303, 1069, 1152
AclI	AACGTT	1 cut(s)	1130
AclWI	GGATC	5 cut(s)	134, 147, 223, 851, 1010
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	153, 802, 1135
AcyI	GRCGYC	2 cut(s)	260, 668
AfaI	GTAC	3 cut(s)	706, 994, 1007
AfiI	CCNNNNNNNGG	5 cut(s)	136, 149, 181, 182, 308
AgeI	ACCGGT	2 cut(s)	129, 222
AgsI	TTSAA	4 cut(s)	801, 1048, 1100, 1135
AjnI	CCWGG	1 cut(s)	8
AluBI	AGCT	5 cut(s)	23, 90, 535, 725, 1022
AluI	AGCT	5 cut(s)	23, 90, 535, 725, 1022
Alw21I	GWGCWC	1 cut(s)	542
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	5 cut(s)	134, 147, 223, 851, 1010
AoxI	GGCC	2 cut(s)	3, 235
ApeKI	GCWGC	2 cut(s)	203, 722
ApoI	RAATTY	3 cut(s)	153, 802, 1135
ArsI	GACNNNNNNTTYG	2 cut(s)	172, 204
AseI	ATTAAT	2 cut(s)	945, 1352
AsiGI	ACCGGT	2 cut(s)	129, 222
Asp718I	GGTACC	1 cut(s)	992
AspLEI	GCGC	2 cut(s)	670, 1055
AspS9I	GGNCC	1 cut(s)	235
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	139, 537, 866
AsuNHI	GCTAGC	1 cut(s)	587
BamHI	GGATCC	1 cut(s)	139
BanI	GGYRCC	2 cut(s)	667, 992
BarI	GAAGNNNNNNTAC	2 cut(s)	1194, 1226
BbsI	GAAGAC	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	542
BbvI	GCAGC	2 cut(s)	190, 734
BccI	CCATC	2 cut(s)	749, 1064
BceAI	ACGGC	2 cut(s)	295, 385
BciT130I	CCWGG	1 cut(s)	10
BciVI	GTATCC	2 cut(s)	367, 772
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	3 cut(s)	27, 588, 771
BfoI	RGCGCY	2 cut(s)	671, 1056
BfuI	GTATCC	2 cut(s)	367, 772
BglI	GCCNNNNNGGC	1 cut(s)	246
BisI	GCNGC	5 cut(s)	6, 204, 238, 263, 723
BlsI	GCNGC	5 cut(s)	7, 205, 239, 264, 724
Bme1390I	CCNGG	2 cut(s)	10, 233
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	5 cut(s)	141, 236, 501, 669, 994
BmrFI	CCNGG	2 cut(s)	10, 233
BmsI	GCATC	1 cut(s)	634
BmtI	GCTAGC	1 cut(s)	591
BpiI	GAAGAC	1 cut(s)	263
BplI	GAGNNNNNCTC	2 cut(s)	1259, 1291
BpuMI	CCSGG	1 cut(s)	233
BsaAI	YACGTR	1 cut(s)	1005
BsaBI	GATNNNNATC	1 cut(s)	906
BsaHI	GRCGYC	2 cut(s)	260, 668
BsaJI	CCNNGG	3 cut(s)	232, 244, 347
BsaWI	WCCGGW	4 cut(s)	129, 149, 222, 294
Bsc4I	CCNNNNNNNGG	5 cut(s)	136, 149, 181, 182, 308
Bse118I	RCCGGY	2 cut(s)	129, 222
Bse1I	ACTGG	3 cut(s)	19, 706, 841
Bse8I	GATNNNNATC	1 cut(s)	906
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	3 cut(s)	232, 244, 347
BseGI	GGATG	3 cut(s)	760, 1174, 1201
BseJI	GATNNNNATC	1 cut(s)	906
BseLI	CCNNNNNNNGG	5 cut(s)	136, 149, 181, 182, 308
BseNI	ACTGG	3 cut(s)	19, 706, 841
BseXI	GCAGC	2 cut(s)	190, 734
BshFI	GGCC	2 cut(s)	5, 237
BshNI	GGYRCC	2 cut(s)	667, 992
BshTI	ACCGGT	2 cut(s)	129, 222
BsiHKAI	GWGCWC	1 cut(s)	542
BsiSI	CCGG	5 cut(s)	130, 150, 223, 232, 295
BslFI	GGGAC	2 cut(s)	118, 355
BslI	CCNNNNNNNGG	5 cut(s)	136, 149, 181, 182, 308
BsmAI	GTCTC	1 cut(s)	281
BsmFI	GGGAC	2 cut(s)	118, 355
BsmI	GAATGC	1 cut(s)	1337
BsnI	GGCC	2 cut(s)	5, 237
Bsp1286I	GDGCHC	1 cut(s)	542
Bsp143I	GATC	7 cut(s)	139, 228, 843, 961, 1015, 1087, 1291
BspACI	CCGC	6 cut(s)	6, 238, 263, 303, 1069, 1152
BspANI	GGCC	2 cut(s)	5, 237
BspLI	GGNNCC	5 cut(s)	141, 236, 501, 669, 994
BspOI	GCTAGC	1 cut(s)	591
BspPI	GGATC	5 cut(s)	134, 147, 223, 851, 1010
BspQI	GCTCTTC	1 cut(s)	547
BspT107I	GGYRCC	2 cut(s)	667, 992
BsrFI	RCCGGY	2 cut(s)	129, 222
BsrI	ACTGG	3 cut(s)	19, 706, 841
BssAI	RCCGGY	2 cut(s)	129, 222
BssECI	CCNNGG	3 cut(s)	232, 244, 347
BssMI	GATC	7 cut(s)	139, 228, 843, 961, 1015, 1087, 1291
BssNI	GRCGYC	2 cut(s)	260, 668
BssT1I	CCWWGG	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	4 cut(s)	218, 928, 1114, 1215
Bst6I	CTCTTC	1 cut(s)	547
BstACI	GRCGYC	2 cut(s)	260, 668
BstAPI	GCANNNNNTGC	1 cut(s)	519
BstBAI	YACGTR	1 cut(s)	1005
BstC8I	GCNNGC	3 cut(s)	589, 795, 1071
BstF5I	GGATG	3 cut(s)	760, 1174, 1201
BstH2I	RGCGCY	2 cut(s)	671, 1056
BstHHI	GCGC	2 cut(s)	670, 1055
BstKTI	GATC	7 cut(s)	142, 231, 846, 964, 1018, 1090, 1294
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	7 cut(s)	139, 228, 843, 961, 1015, 1087, 1291
BstMWI	GCNNNNNNNGC	3 cut(s)	246, 519, 674
BstNI	CCWGG	1 cut(s)	10
BstNSI	RCATGY	1 cut(s)	778
BstSCI	CCNGG	2 cut(s)	8, 231
BstSNI	TACGTA	1 cut(s)	1005
BstV1I	GCAGC	2 cut(s)	190, 734
BstV2I	GAAGAC	1 cut(s)	263
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuI	GTATCC	2 cut(s)	367, 772
BsuRI	GGCC	2 cut(s)	5, 237
BtsCI	GGATG	3 cut(s)	760, 1174, 1201
BtsI	GCAGTG	2 cut(s)	388, 1284
BtsIMutI	CAGTG	2 cut(s)	388, 1284
Cac8I	GCNNGC	3 cut(s)	589, 795, 1071
CfoI	GCGC	2 cut(s)	670, 1055
Cfr10I	RCCGGY	2 cut(s)	129, 222
Cfr13I	GGNCC	1 cut(s)	235
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	3 cut(s)	705, 993, 1006
CspAI	ACCGGT	2 cut(s)	129, 222
CviAII	CATG	4 cut(s)	443, 775, 814, 1311
CviQI	GTAC	3 cut(s)	705, 993, 1006
DinI	GGCGCC	1 cut(s)	669
DpnI	GATC	7 cut(s)	141, 230, 845, 963, 1017, 1089, 1293
DpnII	GATC	7 cut(s)	139, 228, 843, 961, 1015, 1087, 1291
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	547
EarI	CTCTTC	1 cut(s)	547
EciI	GGCGGA	1 cut(s)	1167
Eco105I	TACGTA	1 cut(s)	1005
Eco130I	CCWWGG	1 cut(s)	347
EcoRI	GAATTC	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	347
EgeI	GGCGCC	1 cut(s)	669
EheI	GGCGCC	1 cut(s)	669
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	4 cut(s)	446, 778, 817, 1314
FaqI	GGGAC	2 cut(s)	118, 355
FatI	CATG	4 cut(s)	442, 774, 813, 1310
FauI	CCCGC	2 cut(s)	310, 1062
FblI	GTMKAC	1 cut(s)	870
Fnu4HI	GCNGC	5 cut(s)	6, 204, 238, 263, 723
FokI	GGATG	3 cut(s)	767, 1161, 1208
Fsp4HI	GCNGC	5 cut(s)	6, 204, 238, 263, 723
FspBI	CTAG	3 cut(s)	27, 588, 771
GlaI	GCGC	2 cut(s)	669, 1054
GluI	GCNGC	5 cut(s)	6, 204, 238, 263, 723
HaeII	RGCGCY	2 cut(s)	671, 1056
HaeIII	GGCC	2 cut(s)	5, 237
HapII	CCGG	5 cut(s)	130, 150, 223, 232, 295
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	2 cut(s)	670, 1055
Hin1I	GRCGYC	2 cut(s)	260, 668
Hin1II	CATG	4 cut(s)	446, 778, 817, 1314
Hin6I	GCGC	2 cut(s)	668, 1053
HinP1I	GCGC	2 cut(s)	668, 1053
HinfI	GANTC	5 cut(s)	187, 298, 343, 606, 986
HpaII	CCGG	5 cut(s)	130, 150, 223, 232, 295
HphI	GGTGA	3 cut(s)	139, 537, 866
Hpy166II	GTNNAC	2 cut(s)	277, 871
Hpy188I	TCNGA	7 cut(s)	87, 139, 699, 848, 899, 1087, 1118
Hpy188III	TCNNGA	5 cut(s)	103, 191, 603, 965, 1328
Hpy8I	GTNNAC	2 cut(s)	277, 871
HpyAV	CCTTC	2 cut(s)	418, 1196
HpyCH4III	ACNGT	4 cut(s)	218, 928, 1114, 1215
HpyCH4IV	ACGT	4 cut(s)	107, 621, 1004, 1130
HpyCH4V	TGCA	3 cut(s)	319, 507, 628
HpyF10VI	GCNNNNNNNGC	3 cut(s)	246, 519, 674
HpySE526I	ACGT	4 cut(s)	107, 621, 1004, 1130
Hsp92I	GRCGYC	2 cut(s)	260, 668
Hsp92II	CATG	4 cut(s)	446, 778, 817, 1314
HspAI	GCGC	2 cut(s)	668, 1053
KasI	GGCGCC	1 cut(s)	667
KpnI	GGTACC	1 cut(s)	996
Kzo9I	GATC	7 cut(s)	139, 228, 843, 961, 1015, 1087, 1291
LguI	GCTCTTC	1 cut(s)	547
LmnI	GCTCC	3 cut(s)	87, 730, 1362
Lsp1109I	GCAGC	2 cut(s)	190, 734
LweI	GCATC	1 cut(s)	634
MaeI	CTAG	3 cut(s)	27, 588, 771
MaeII	ACGT	4 cut(s)	107, 621, 1004, 1130
MaeIII	GTNAC	4 cut(s)	92, 145, 218, 928
MalI	GATC	7 cut(s)	141, 230, 845, 963, 1017, 1089, 1293
MboI	GATC	7 cut(s)	139, 228, 843, 961, 1015, 1087, 1291
MboII	GAAGA	4 cut(s)	268, 534, 591, 1256
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	542
MluCI	AATT	8 cut(s)	118, 153, 802, 825, 1081, 1135, 1257, 1299
Mly113I	GGCGCC	1 cut(s)	668
MlyI	GAGTC	2 cut(s)	196, 337
MmeI	TCCRAC	4 cut(s)	65, 432, 877, 935
MnlI	CCTC	4 cut(s)	254, 610, 1006, 1192
MseI	TTAA	7 cut(s)	117, 573, 713, 828, 945, 1352, 1363
MspA1I	CMGCKG	1 cut(s)	535
MspI	CCGG	5 cut(s)	130, 150, 223, 232, 295
MspR9I	CCNGG	2 cut(s)	10, 233
Mva1269I	GAATGC	1 cut(s)	1337
MvaI	CCWGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	3 cut(s)	246, 519, 674
NarI	GGCGCC	1 cut(s)	668
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	7 cut(s)	139, 228, 843, 961, 1015, 1087, 1291
NheI	GCTAGC	1 cut(s)	587
NlaIII	CATG	4 cut(s)	446, 778, 817, 1314
NlaIV	GGNNCC	5 cut(s)	141, 236, 501, 669, 994
NmeAIII	GCCGAG	2 cut(s)	138, 225
NmuCI	GTSAC	3 cut(s)	92, 145, 218
NspI	RCATGY	1 cut(s)	778
PciSI	GCTCTTC	1 cut(s)	547
PctI	GAATGC	1 cut(s)	1337
PfeI	GAWTC	3 cut(s)	298, 606, 986
PinAI	ACCGGT	2 cut(s)	129, 222
PkrI	GCNGC	5 cut(s)	7, 205, 239, 264, 724
PleI	GAGTC	2 cut(s)	195, 337
PluTI	GGCGCC	1 cut(s)	671
PpsI	GAGTC	2 cut(s)	195, 337
Ppu21I	YACGTR	1 cut(s)	1005
PshBI	ATTAAT	2 cut(s)	945, 1352
Psp1406I	AACGTT	1 cut(s)	1130
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	5 cut(s)	141, 236, 501, 669, 994
PspPI	GGNCC	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	535
RsaI	GTAC	3 cut(s)	706, 994, 1007
RsaNI	GTAC	3 cut(s)	705, 993, 1006
SapI	GCTCTTC	1 cut(s)	547
SaqAI	TTAA	7 cut(s)	117, 573, 713, 828, 945, 1352, 1363
SatI	GCNGC	5 cut(s)	6, 204, 238, 263, 723
Sau3AI	GATC	7 cut(s)	139, 228, 843, 961, 1015, 1087, 1291
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	2 cut(s)	196, 337
ScrFI	CCNGG	2 cut(s)	10, 233
SduI	GDGCHC	1 cut(s)	542
SfaNI	GCATC	1 cut(s)	634
SfoI	GGCGCC	1 cut(s)	669
SnaBI	TACGTA	1 cut(s)	1005
Sse9I	AATT	8 cut(s)	118, 153, 802, 825, 1081, 1135, 1257, 1299
SsiI	CCGC	6 cut(s)	6, 238, 263, 303, 1069, 1152
SspDI	GGCGCC	1 cut(s)	667
SspI	AATATT	2 cut(s)	197, 1103
SspMI	CTAG	3 cut(s)	27, 588, 771
StyD4I	CCNGG	2 cut(s)	8, 231
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	4 cut(s)	218, 928, 1114, 1215
TaiI	ACGT	4 cut(s)	110, 624, 1007, 1133
TasI	AATT	8 cut(s)	118, 153, 802, 825, 1081, 1135, 1257, 1299
TauI	GCSGC	3 cut(s)	8, 240, 265
TfiI	GAWTC	3 cut(s)	298, 606, 986
Tru1I	TTAA	7 cut(s)	117, 573, 713, 828, 945, 1352, 1363
Tru9I	TTAA	7 cut(s)	117, 573, 713, 828, 945, 1352, 1363
TscAI	CASTG	2 cut(s)	388, 1291
TseFI	GTSAC	3 cut(s)	92, 145, 218
TseI	GCWGC	2 cut(s)	203, 722
Tsp45I	GTSAC	3 cut(s)	92, 145, 218
TspDTI	ATGAA	6 cut(s)	183, 585, 1160, 1163, 1292, 1299
TspGWI	ACGGA	1 cut(s)	846
TspRI	CASTG	2 cut(s)	388, 1291
VspI	ATTAAT	2 cut(s)	945, 1352
XapI	RAATTY	3 cut(s)	153, 802, 1135
XceI	RCATGY	1 cut(s)	778
XmiI	GTMKAC	1 cut(s)	870
XspI	CTAG	3 cut(s)	27, 588, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.