MD15G1238700.v1.1

Pre-rRNA-processing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0010044
Physical Location & Seq
Reverse (-)
19661577 .. 19663441
1865 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1238700.v1.1.491

Sequence Viewer

Length: 981 bp
ATGGGGAAGAACAAGAAGAAGCTCAAAGAATCCAAAGGCGACGATGAGAACATCATCGCCGATCCTCGGTTTTCTTCCGTGCACTGGGACCCGAGGTTCCAGAACGTTCCCAAGCACAAGGCGAAGGTTGAGATTGACTCGCGGTTCAACCGGATGTTCACGGACAAGCGGTTCAGCTCATCATCGGCGCCGCTGGACAAGCGAGGCAAGCCGAAGAAGCTCGATGAGGGAAACTCGCTGCAGCAGTACTACCGGATGGAGGACGACGACGACGGAGATAAGGTCAAGTCCGAAGAGGAAGACGAAGATAAGGCAAAATTGAAAGAGGAAAAGGAAGAGGAAGAGGAGGAGGAAGAGAGTGAGGAAGTGGAGAGGCTCGGCGGAGAGGAATCGGAGGATGACGTGGCCAGTGGTGGCTCGAATACTACGACGGATACCGACGCCGATGATGGATACGAAGATGAGGAGGTGGTTTTTGAGGACGGAGCGCCTGGAATTGAGGCGGAAGATATACCAGAAATTGAGAAGGAGACTCACAGACTTGCTATTGTTAACCTGGATTGGAGGCATGTGAAGGCTGTTGACTTGTATGCAGTGTTGAGGTCATTTCTTCCCAAAGGTGGACAAATGAAATCTGTGACTGTCTATCCGTCTGAGTTTGGACTCCAGCGTATGAAAGATGAAGAACTTCGTGGTCCTGTTGGCCTATTTGATGATGAAAATGAGAAAAGTGATGAAGATGACGACACTGACGATGATGATGAGGAGCTTATTGCTCAGAAAATGCATGCTTATGAGAAAAGCAGGCTAAGGGATTATTTTGCTGTTGTGGAATGTGATTCAATTACCACAGCAGATTACCTCTACAAGAGTTGTGATGGAGTTGAGTTTGAAAGATCATCGAATAAACTTGATTTAAGGTTCATCCCTGACTCGATGGAATTTAAACACCCACCCCGTGATGTTGCGACAGAGGAGTGA

Protein Analysis

327

Amino Acids

37.48

Weight (kDa)

4.44

Isoelectric Point (pI)

60.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_ESF1 PF25121 178 - 324 4.8e-61 ESF1 RRM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01160
fragaria_vesca FvH4_1g11200 FvH4_1g11200 FvH4_1g11200 FvH4_1g11200 FvH4_1g11200
malus_domestica MD02G1124600.v1.1 MD15G1238700.v1.1
prunus_persica Prupe.7G173800_v2.0.a1
pyrus_communis pycom02g09730 pycom15g21210
rosa_chinensis RchiOBHm_Chr2g0098611
rosa_laevigata RLG00000016812
rosa_multiflora Rmu_sc0002776.1_g000009
rosa_roxburghii Rroxscaffold_2G00143850
rosa_rugosa Rorug02G0073700
rosa_samantha Rh2AG121300 Rh2BG124900 Rh2CG125900 Rh2DG127000
rosa_wichuraiana Rw0G004120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 187
AccII CGCG 1 cut(s) 142
AciI CCGC 5 cut(s) 142, 169, 191, 381, 503
AclI AACGTT 1 cut(s) 105
AclWI GGATC 1 cut(s) 56
AcoI YGGCCR 1 cut(s) 405
AcsI RAATTY 1 cut(s) 941
AcyI GRCGYC 2 cut(s) 188, 441
AdeI CACNNNGTG 1 cut(s) 959
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 4 cut(s) 66, 84, 259, 620
AgsI TTSAA 4 cut(s) 148, 322, 843, 893
AjiI CACGTC 1 cut(s) 403
AjnI CCWGG 2 cut(s) 490, 555
AloI GAACNNNNNNTCC 4 cut(s) 80, 112, 155, 187
AluBI AGCT 4 cut(s) 22, 177, 220, 769
AluI AGCT 4 cut(s) 22, 177, 220, 769
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 1 cut(s) 524
Alw44I GTGCAC 1 cut(s) 80
AlwI GGATC 1 cut(s) 56
Ama87I CYCGRG 1 cut(s) 91
AoxI GGCC 2 cut(s) 405, 703
ApaLI GTGCAC 1 cut(s) 80
ApeKI GCWGC 2 cut(s) 238, 241
ApoI RAATTY 1 cut(s) 941
Asp700I GAANNNNTTC 1 cut(s) 687
AspLEI GCGC 2 cut(s) 190, 490
AspS9I GGNCC 2 cut(s) 88, 695
AvaI CYCGRG 1 cut(s) 91
AvaII GGWCC 2 cut(s) 88, 695
BaeGI GKGCMC 1 cut(s) 84
BalI TGGCCA 1 cut(s) 407
BanI GGYRCC 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 225, 253
BccI CCATC 4 cut(s) 250, 443, 872, 931
BciT130I CCWGG 2 cut(s) 492, 557
BciVI GTATCC 2 cut(s) 427, 446
BcoDI GTCTC 1 cut(s) 524
BfmI CTRYAG 1 cut(s) 239
BfoI RGCGCY 2 cut(s) 191, 491
BfuI GTATCC 2 cut(s) 427, 446
BisI GCNGC 3 cut(s) 191, 239, 242
BlsI GCNGC 3 cut(s) 192, 240, 243
BmcAI AGTACT 1 cut(s) 248
Bme1390I CCNGG 2 cut(s) 492, 557
Bme18I GGWCC 2 cut(s) 88, 695
BmeT110I CYCGRG 1 cut(s) 91
BmgBI CACGTC 1 cut(s) 403
BmgT120I GGNCC 2 cut(s) 88, 695
BmiI GGNNCC 4 cut(s) 89, 90, 98, 189
BmrFI CCNGG 2 cut(s) 492, 557
BmrI ACTGGG 1 cut(s) 94
BmuI ACTGGG 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 306
BplI GAGNNNNNCTC 4 cut(s) 122, 154, 218, 250
BpmI CTGGAG 1 cut(s) 650
Bpu10I CCTNAGC 1 cut(s) 809
BsaHI GRCGYC 2 cut(s) 188, 441
BsaJI CCNNGG 2 cut(s) 65, 92
BsaWI WCCGGW 2 cut(s) 150, 252
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bsc4I CCNNNNNNNGG 4 cut(s) 66, 84, 259, 620
Bse1I ACTGG 2 cut(s) 89, 408
BseBI CCWGG 2 cut(s) 492, 557
BseDI CCNNGG 2 cut(s) 65, 92
BseGI GGATG 4 cut(s) 159, 261, 403, 924
BseLI CCNNNNNNNGG 4 cut(s) 66, 84, 259, 620
BseMII CTCAG 2 cut(s) 645, 791
BseNI ACTGG 2 cut(s) 89, 408
BseRI GAGGAG 4 cut(s) 359, 362, 479, 779
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 2 cut(s) 225, 253
Bsh1236I CGCG 1 cut(s) 142
BshFI GGCC 2 cut(s) 407, 705
BshNI GGYRCC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 84
BsiHKCI CYCGRG 1 cut(s) 91
BsiSI CCGG 2 cut(s) 151, 253
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 4 cut(s) 66, 84, 259, 620
BsmAI GTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 101
BsnI GGCC 2 cut(s) 407, 705
BsoBI CYCGRG 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 61, 896
BspACI CCGC 5 cut(s) 142, 169, 191, 381, 503
BspANI GGCC 2 cut(s) 407, 705
BspCNI CTCAG 2 cut(s) 646, 790
BspFNI CGCG 1 cut(s) 142
BspLI GGNNCC 4 cut(s) 89, 90, 98, 189
BspMAI CTGCAG 1 cut(s) 243
BspPI GGATC 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 187
BsrI ACTGG 2 cut(s) 89, 408
BssECI CCNNGG 2 cut(s) 65, 92
BssMI GATC 2 cut(s) 61, 896
BssNI GRCGYC 2 cut(s) 188, 441
Bst2UI CCWGG 2 cut(s) 492, 557
Bst4CI ACNGT 1 cut(s) 643
Bst6I CTCTTC 4 cut(s) 288, 330, 336, 348
BstACI GRCGYC 2 cut(s) 188, 441
BstC8I GCNNGC 3 cut(s) 209, 789, 806
BstDEI CTNAG 3 cut(s) 654, 777, 809
BstF5I GGATG 4 cut(s) 159, 261, 403, 924
BstFNI CGCG 1 cut(s) 142
BstH2I RGCGCY 2 cut(s) 191, 491
BstHHI GCGC 2 cut(s) 190, 490
BstKTI GATC 2 cut(s) 64, 899
BstMAI GTCTC 1 cut(s) 524
BstMBI GATC 2 cut(s) 61, 896
BstMWI GCNNNNNNNGC 3 cut(s) 199, 208, 217
BstNI CCWGG 2 cut(s) 492, 557
BstNSI RCATGY 2 cut(s) 572, 791
BstSCI CCNGG 2 cut(s) 490, 555
BstSFI CTRYAG 1 cut(s) 239
BstSLI GKGCMC 1 cut(s) 84
BstUI CGCG 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 225, 253
BstV2I GAAGAC 1 cut(s) 306
BsuI GTATCC 2 cut(s) 427, 446
BsuRI GGCC 2 cut(s) 407, 705
BtgZI GCGATG 1 cut(s) 40
BtrI CACGTC 1 cut(s) 403
BtsCI GGATG 4 cut(s) 159, 261, 403, 924
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 4 cut(s) 82, 415, 600, 747
Cac8I GCNNGC 3 cut(s) 209, 789, 806
CfoI GCGC 2 cut(s) 190, 490
Cfr13I GGNCC 2 cut(s) 88, 695
CseI GACGC 1 cut(s) 449
Csp6I GTAC 1 cut(s) 247
CviAII CATG 2 cut(s) 569, 788
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 3 cut(s) 654, 777, 809
DinI GGCGCC 1 cut(s) 189
DpnI GATC 2 cut(s) 63, 898
DpnII GATC 2 cut(s) 61, 896
DraI TTTAAA 1 cut(s) 946
DraIII CACNNNGTG 1 cut(s) 959
EaeI YGGCCR 1 cut(s) 405
Eam1104I CTCTTC 4 cut(s) 288, 330, 336, 348
EarI CTCTTC 4 cut(s) 288, 330, 336, 348
EciI GGCGGA 2 cut(s) 396, 518
Eco47I GGWCC 2 cut(s) 88, 695
Eco88I CYCGRG 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 88
EcoRII CCWGG 2 cut(s) 490, 555
EcoT22I ATGCAT 1 cut(s) 789
EgeI GGCGCC 1 cut(s) 189
EheI GGCGCC 1 cut(s) 189
FaeI CATG 2 cut(s) 572, 791
FaiI YATR 6 cut(s) 512, 570, 591, 674, 789, 795
FaqI GGGAC 1 cut(s) 101
FatI CATG 2 cut(s) 568, 787
Fnu4HI GCNGC 3 cut(s) 191, 239, 242
FokI GGATG 4 cut(s) 166, 268, 410, 911
Fsp4HI GCNGC 3 cut(s) 191, 239, 242
GlaI GCGC 2 cut(s) 189, 489
GluI GCNGC 3 cut(s) 191, 239, 242
GsuI CTGGAG 1 cut(s) 650
HaeII RGCGCY 2 cut(s) 191, 491
HaeIII GGCC 2 cut(s) 407, 705
HapII CCGG 2 cut(s) 151, 253
HgaI GACGC 1 cut(s) 449
HhaI GCGC 2 cut(s) 190, 490
Hin1I GRCGYC 2 cut(s) 188, 441
Hin1II CATG 2 cut(s) 572, 791
Hin6I GCGC 2 cut(s) 188, 488
HinP1I GCGC 2 cut(s) 188, 488
HincII GTYRAC 2 cut(s) 553, 583
HindII GTYRAC 2 cut(s) 553, 583
HinfI GANTC 7 cut(s) 29, 137, 389, 532, 663, 839, 932
HpaI GTTAAC 1 cut(s) 553
HpaII CCGG 2 cut(s) 151, 253
Hpy166II GTNNAC 5 cut(s) 82, 159, 553, 583, 623
Hpy188I TCNGA 4 cut(s) 292, 394, 655, 780
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 5 cut(s) 82, 159, 553, 583, 623
Hpy99I CGWCG 6 cut(s) 44, 269, 272, 275, 433, 443
HpyAV CCTTC 3 cut(s) 118, 520, 568
HpyCH4III ACNGT 1 cut(s) 643
HpyCH4IV ACGT 2 cut(s) 105, 402
HpyCH4V TGCA 4 cut(s) 82, 241, 593, 787
HpyF10VI GCNNNNNNNGC 3 cut(s) 199, 208, 217
HpyF3I CTNAG 3 cut(s) 654, 777, 809
HpySE526I ACGT 2 cut(s) 105, 402
Hsp92I GRCGYC 2 cut(s) 188, 441
Hsp92II CATG 2 cut(s) 572, 791
HspAI GCGC 2 cut(s) 188, 488
KasI GGCGCC 1 cut(s) 187
KflI GGGWCCC 1 cut(s) 88
KspAI GTTAAC 1 cut(s) 553
Kzo9I GATC 2 cut(s) 61, 896
LmnI GCTCC 2 cut(s) 485, 766
Lsp1109I GCAGC 2 cut(s) 225, 253
MaeII ACGT 2 cut(s) 105, 402
MaeIII GTNAC 1 cut(s) 637
MalI GATC 2 cut(s) 63, 898
MboI GATC 2 cut(s) 61, 896
MhlI GDGCHC 1 cut(s) 84
MlsI TGGCCA 1 cut(s) 407
MluCI AATT 5 cut(s) 317, 495, 519, 843, 941
MluNI TGGCCA 1 cut(s) 407
Mly113I GGCGCC 1 cut(s) 188
MlyI GAGTC 4 cut(s) 131, 526, 657, 926
Mox20I TGGCCA 1 cut(s) 407
Mph1103I ATGCAT 1 cut(s) 789
MroXI GAANNNNTTC 1 cut(s) 687
MscI TGGCCA 1 cut(s) 407
MseI TTAA 3 cut(s) 552, 917, 945
MslI CAYNNNNRTG 1 cut(s) 792
Msp20I TGGCCA 1 cut(s) 407
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 2 cut(s) 151, 253
MspR9I CCNGG 2 cut(s) 492, 557
MvaI CCWGG 2 cut(s) 492, 557
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 3 cut(s) 199, 208, 217
NarI GGCGCC 1 cut(s) 188
NdeII GATC 2 cut(s) 61, 896
NlaIII CATG 2 cut(s) 572, 791
NlaIV GGNNCC 4 cut(s) 89, 90, 98, 189
NmeAIII GCCGAG 1 cut(s) 357
NmuCI GTSAC 1 cut(s) 637
NsiI ATGCAT 1 cut(s) 789
NspI RCATGY 2 cut(s) 572, 791
PaeI GCATGC 1 cut(s) 791
PcsI WCGNNNNNNNCGW 2 cut(s) 425, 750
PdmI GAANNNNTTC 1 cut(s) 687
PfeI GAWTC 3 cut(s) 29, 389, 839
PkrI GCNGC 3 cut(s) 192, 240, 243
PleI GAGTC 4 cut(s) 131, 526, 657, 926
PluTI GGCGCC 1 cut(s) 191
PpsI GAGTC 4 cut(s) 131, 526, 657, 926
PpuMI RGGWCCY 1 cut(s) 88
Psp1406I AACGTT 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 88
Psp6I CCWGG 2 cut(s) 490, 555
PspGI CCWGG 2 cut(s) 490, 555
PspN4I GGNNCC 4 cut(s) 89, 90, 98, 189
PspPI GGNCC 2 cut(s) 88, 695
PspPPI RGGWCCY 1 cut(s) 88
PstI CTGCAG 1 cut(s) 243
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 792
SaqAI TTAA 3 cut(s) 552, 917, 945
SatI GCNGC 3 cut(s) 191, 239, 242
Sau3AI GATC 2 cut(s) 61, 896
Sau96I GGNCC 2 cut(s) 88, 695
ScaI AGTACT 1 cut(s) 248
SchI GAGTC 4 cut(s) 131, 526, 657, 926
ScrFI CCNGG 2 cut(s) 492, 557
SduI GDGCHC 1 cut(s) 84
SfcI CTRYAG 1 cut(s) 239
SfoI GGCGCC 1 cut(s) 189
SinI GGWCC 2 cut(s) 88, 695
SmiMI CAYNNNNRTG 1 cut(s) 792
SphI GCATGC 1 cut(s) 791
Sse9I AATT 5 cut(s) 317, 495, 519, 843, 941
SsiI CCGC 5 cut(s) 142, 169, 191, 381, 503
SspDI GGCGCC 1 cut(s) 187
StyD4I CCNGG 2 cut(s) 490, 555
TaaI ACNGT 1 cut(s) 643
TaiI ACGT 2 cut(s) 108, 405
TaqI TCGA 4 cut(s) 222, 419, 902, 935
TasI AATT 5 cut(s) 317, 495, 519, 843, 941
TatI WGTACW 1 cut(s) 246
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 3 cut(s) 29, 389, 839
Tru1I TTAA 3 cut(s) 552, 917, 945
Tru9I TTAA 3 cut(s) 552, 917, 945
TscAI CASTG 4 cut(s) 89, 415, 600, 754
TseFI GTSAC 1 cut(s) 637
TseI GCWGC 2 cut(s) 238, 241
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 6 cut(s) 644, 689, 696, 732, 750, 913
TspGWI ACGGA 6 cut(s) 67, 176, 288, 446, 498, 639
TspRI CASTG 4 cut(s) 89, 415, 600, 754
VneI GTGCAC 1 cut(s) 80
VpaK11BI GGWCC 2 cut(s) 88, 695
XapI RAATTY 1 cut(s) 941
XceI RCATGY 2 cut(s) 572, 791
XmnI GAANNNNTTC 1 cut(s) 687
ZrmI AGTACT 1 cut(s) 248
Zsp2I ATGCAT 1 cut(s) 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.