Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010044

Physical Location & Seq

Genomic Coordinates Reverse (-)

11242646 .. 11246434

Gene Structure 3789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG125900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2355 bp

ATGGGGTCGAAGAAGAAGAACAGGAAGAACAAGAAGGAAGATAACAACATCATCACCGATCCGCGATTCGCCTCTGTCCACTGGGACCCGCGGTTTAAAAATGCTCCGAAGCACAAGGCCAAGGTCGAGATCGACGACCGCTTCAAGGCCATGTTCACTGATCCCCGCTTCGCTTCGTCCTCGGCTCCGTCGGACAAGCGCGGCAAGCTCAAGAAGAAGGCCGACCCGGGCGAGGCGCTGCGCCACTACTATCAGACCAACGAGGACCAAGAGGAGGTCAAGTACGATAAGGTGAATACCAAAGAGGATGAGGAAGAAGACGAATTGAGCGACGAAGAGGTTGAGAGTGAGAAAGAAGCTGAGAAGGTGAAATTGGAAGAGGAGAGTGAGAGTGAGGAGGAAGAAGAGAAGGCGAATTTGGAAGAGGAGGAGAGCGAGAGTGAGGAATTGGAGGAGGATGATGTGGCCGGAACAGAATCGGAGACGACGACGGATACGGGGACGGATGATGAAGAAGAAGAAGATGAGGTGGTTTTTGAGGACGGTATACCGGCAATGCAGAACGAAAATATACCTGAAATTGAGAAGGAAACTCACAGGCTTGCTGTTGTTAACCTGGATTGGAGGTATGTTAAGGCTGTTGACTTGTTTGTGGTGTTGAGGTCATTTCTTCCGAAAGGTGGAGAAATGAAGTCTGTTGCTGTGTATCCATCGGACTTTGGAATTCAGCGTATGAAAGAGGAAGAAATTCATGGTCCTGTTGGGCTATTTGATAAGAAAGATGAGGAAGGTGATGAAGAAAGTGATGATGACGATGACGATGATGAGCTTATTAATCAGAAAATGCGTGCTTATGAGAAAAGCCGGCTGAGGTACTACTATGCTGTAGTGGAATGTGACTCAATTGCCACAGCAGATTACCTTTACAGAAATTGTGATGGAGTTGAGTTTGAAAGGTCATCAAATACTCTTGATCTAAGATTCATCCCTGATTCATTGGAAATTAAGCATCCACCCCGTGATATTGCAACGGAGGTACCTTCAAACTATGTTGGTTTGGACTTCCAAACTAGAGCTCTGCAGCAAAGTAAAATTGATATTTCTTGGGATGAGGATGAACCAGGGCGAAGGACCTTGAAACGAAAATTCACTGCTGATCAGCTTGATGAAATGGAAATGAAGGAGTTTTTGGCTTCTGATGAGAGTGAAAGTGATGAGGCCGAGGATGAGGCTGCAGATGATGCAGAGGATAAGCCTGATAAAAAGAGTAAGAAAAGAGATATGTACCGTGCTTTAATCCAGTCTGGAGATGGGGATGGTTCAGATGAGGATGGTGAAGAGGATGGCCAGGATATGGAGGTCACCTTCAATACTGGCTTGGAGGATTTAAGCAAGCGCATTCTTGAAAAGAAGGATAGGGAATCAGAAACAGTTTGGGATGCCTATCTCAGAAAAAGACGTGAGAAAAAGAAGGCTAAGAGAAACAGGTCTAATGATTCATCAGAGGATGAGAGTAGTGATTCTGATCAAGAAGCAAAAGAAGAGCCAGATGATTTCTTCATTGAAGAACCTTCAGTTAAAAAGAGTAAAAAGGAGTCTCGGAGTAAAAGTAACAAAGAAGAAAAGCAGTGCCAAGATATGGAAAAGGAAGCAGAAGCAAGTAGAAATGAGCTTGAGTTATTACTTGCTGATGACAAGGGAGCAGATAAAGGTGTAAAGGGATACAATTTGAAACGTAAAAAGGCAAAGGGAAAGAAGGGTAAGGAAGTTCCGGAGGAGAACAATATACCAACTGCTGATTTGGAAGATCCACGCTTTGCTGTCATGTTCACCTCACCCCTCTTTGCTCTGGATCCAACAGATCCGCAATTCAAAAGGTATCTCCCTTCGGTTTTACTTGATATTATGACAAGCAATTATTTATCTGTATATACCAGGATCTTGGCGAAGATTTTGAAAGATATACAAGTCGACGGTCTTCTTTGGTTCCAGACATCAAATTATGGCTCCAATAGTTGCTGTAATACTTTTCATTCACAGACAATAAATATTGGTTACAAAGACTTGTCGTTTTGGTTTTGCAGGAGTGCAACATATGCCCGGCAGGCAGCACTGAGACAACAGAAGGGTGACCCAGAGGAAGTGCAAGAAAGGGAAGTAAAAGTACAATCCGAGGGTTTCTCGTCAAAGATAGAGAAATCTTCATTAATCAAATCAATTAAGATGAAAGCCAAGCCCTTCGAAAGGAAGGAGGAAATTTTGCAATTTCAAGGTAAAAAGGAAACAAAAGTTGAGCAGGATCCCCGAACCTTAGTACAACCAGTTAAGAAGAAGGCCAAAGTTGGACGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUC153

Protein Analysis

784

Amino Acids

90.41

Weight (kDa)

4.72

Isoelectric Point (pI)

57.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_ESF1	PF25121	198 - 344	1.5e-61	ESF1 RRM domain
NUC153	PF08159	603 - 626	2.8e-09	NUC153 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01160
fragaria_vesca	FvH4_1g11200 FvH4_1g11200 FvH4_1g11200 FvH4_1g11200 FvH4_1g11200
malus_domestica	MD02G1124600.v1.1 MD15G1238700.v1.1
prunus_persica	Prupe.7G173800_v2.0.a1
pyrus_communis	pycom02g09730 pycom15g21210
rosa_chinensis	RchiOBHm_Chr2g0098611
rosa_laevigata	RLG00000016812
rosa_multiflora	Rmu_sc0002776.1_g000009
rosa_roxburghii	Rroxscaffold_2G00143850
rosa_rugosa	Rorug02G0073700
rosa_samantha	Rh2AG121300 Rh2BG124900 Rh2CG125900 Rh2DG127000
rosa_wichuraiana	Rw0G004120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1036
AccB1I	GGYRCC	1 cut(s)	1036
AccB7I	CCANNNNNTGG	2 cut(s)	1354, 1639
AccI	GTMKAC	2 cut(s)	547, 1971
AccII	CGCG	3 cut(s)	64, 91, 201
AccIII	TCCGGA	1 cut(s)	1771
AciI	CCGC	7 cut(s)	62, 89, 91, 139, 166, 201, 1865
AclWI	GGATC	9 cut(s)	53, 155, 1802, 1847, 1856, 1860, 1946, 2294, 2307
AcoI	YGGCCR	2 cut(s)	465, 1345
AcsI	RAATTY	5 cut(s)	415, 723, 747, 1145, 2256
AcuI	CTGAAG	1 cut(s)	1557
AdeI	CACNNNGTG	1 cut(s)	1019
AfaI	GTAC	6 cut(s)	284, 875, 1038, 1286, 2166, 2316
AfiI	CCNNNNNNNGG	7 cut(s)	145, 232, 274, 680, 1354, 1639, 2244
AjiI	CACGTC	1 cut(s)	1460
AjnI	CCWGG	4 cut(s)	615, 1120, 1347, 1934
AjuI	GAANNNNNNNTTGG	6 cut(s)	356, 388, 401, 433, 1172, 1204
AluBI	AGCT	6 cut(s)	208, 359, 829, 1076, 1162, 1672
AluI	AGCT	6 cut(s)	208, 359, 829, 1076, 1162, 1672
Alw21I	GWGCWC	1 cut(s)	1078
Alw26I	GTCTC	3 cut(s)	476, 1602, 2110
AlwI	GGATC	9 cut(s)	53, 155, 1802, 1847, 1856, 1860, 1946, 2294, 2307
Ama87I	CYCGRG	1 cut(s)	226
Aor13HI	TCCGGA	1 cut(s)	1771
AoxI	GGCC	7 cut(s)	117, 147, 219, 465, 1218, 1345, 2334
ApeKI	GCWGC	4 cut(s)	238, 1081, 1232, 2108
ApoI	RAATTY	5 cut(s)	415, 723, 747, 1145, 2256
AseI	ATTAAT	2 cut(s)	834, 2207
Asp700I	GAANNNNTTC	1 cut(s)	747
Asp718I	GGTACC	1 cut(s)	1036
AspLEI	GCGC	4 cut(s)	201, 238, 243, 1398
AspS9I	GGNCC	4 cut(s)	85, 265, 755, 1131
AsuC2I	CCSGG	3 cut(s)	227, 228, 2101
AsuHPI	GGTGA	9 cut(s)	46, 304, 379, 803, 1346, 1354, 1822, 1827, 2141
AsuII	TTCGAA	1 cut(s)	2241
AvaI	CYCGRG	1 cut(s)	226
AvaII	GGWCC	4 cut(s)	85, 265, 755, 1131
BaeI	ACNNNNGTAYC	2 cut(s)	1020, 1053
BalI	TGGCCA	1 cut(s)	1347
BamHI	GGATCC	2 cut(s)	1852, 2299
BanI	GGYRCC	1 cut(s)	1036
BanII	GRGCYC	1 cut(s)	1078
BarI	GAAGNNNNNNTAC	2 cut(s)	2148, 2180
BbsI	GAAGAC	2 cut(s)	324, 1970
Bbv12I	GWGCWC	1 cut(s)	1078
BbvCI	CCTCAGC	1 cut(s)	869
BbvI	GCAGC	4 cut(s)	225, 1093, 1219, 2120
BccI	CCATC	6 cut(s)	718, 932, 1304, 1310, 1325, 1337
BciT130I	CCWGG	4 cut(s)	617, 1122, 1349, 1936
BciVI	GTATCC	3 cut(s)	487, 717, 1715
BclI	TGATCA	2 cut(s)	1156, 1525
BcnI	CCSGG	3 cut(s)	227, 228, 2101
BcoDI	GTCTC	3 cut(s)	476, 1602, 2110
BfaI	CTAG	1 cut(s)	1071
BfmI	CTRYAG	3 cut(s)	885, 1079, 1233
BfoI	RGCGCY	1 cut(s)	239
BfuI	GTATCC	3 cut(s)	487, 717, 1715
BglI	GCCNNNNNGGC	1 cut(s)	2105
BisI	GCNGC	5 cut(s)	202, 239, 1082, 1233, 2109
BlsI	GCNGC	5 cut(s)	203, 240, 1083, 1234, 2110
Bme1390I	CCNGG	7 cut(s)	227, 228, 617, 1122, 1349, 1936, 2101
Bme18I	GGWCC	4 cut(s)	85, 265, 755, 1131
BmeT110I	CYCGRG	1 cut(s)	226
BmgBI	CACGTC	1 cut(s)	1460
BmgT120I	GGNCC	4 cut(s)	85, 265, 755, 1131
BmiI	GGNNCC	8 cut(s)	86, 87, 186, 1038, 1854, 1988, 2008, 2301
BmrFI	CCNGG	7 cut(s)	227, 228, 617, 1122, 1349, 1936, 2101
BmrI	ACTGGG	1 cut(s)	91
BmsI	GCATC	3 cut(s)	1018, 1231, 1429
BmuI	ACTGGG	1 cut(s)	91
BpiI	GAAGAC	2 cut(s)	324, 1970
BplI	GAGNNNNNCTC	2 cut(s)	2165, 2197
BpmI	CTGGAG	1 cut(s)	1326
Bpu10I	CCTNAGC	1 cut(s)	869
Bpu14I	TTCGAA	1 cut(s)	2241
BpuEI	CTTGAG	2 cut(s)	194, 1694
BpuMI	CCSGG	3 cut(s)	227, 228, 2101
BsaBI	GATNNNNATC	2 cut(s)	1443, 1524
BsaJI	CCNNGG	7 cut(s)	89, 120, 180, 226, 1121, 1221, 2172
BsaWI	WCCGGW	1 cut(s)	1771
BsaXI	ACNNNNNCTCC	4 cut(s)	266, 296, 1594, 1624
Bsc4I	CCNNNNNNNGG	7 cut(s)	145, 232, 274, 680, 1354, 1639, 2244
Bse118I	RCCGGY	2 cut(s)	550, 864
Bse1I	ACTGG	4 cut(s)	86, 1300, 1378, 2321
Bse3DI	GCAATG	1 cut(s)	561
Bse8I	GATNNNNATC	2 cut(s)	1443, 1524
BseAI	TCCGGA	1 cut(s)	1771
BseBI	CCWGG	4 cut(s)	617, 1122, 1349, 1936
BseDI	CCNNGG	7 cut(s)	89, 120, 180, 226, 1121, 1221, 2172
BseJI	GATNNNNATC	2 cut(s)	1443, 1524
BseLI	CCNNNNNNNGG	7 cut(s)	145, 232, 274, 680, 1354, 1639, 2244
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	4 cut(s)	351, 860, 1462, 2105
BseNI	ACTGG	4 cut(s)	86, 1300, 1378, 2321
BseRI	GAGGAG	7 cut(s)	287, 395, 410, 440, 443, 467, 1790
BseXI	GCAGC	4 cut(s)	225, 1093, 1219, 2120
Bsh1236I	CGCG	3 cut(s)	64, 91, 201
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	7 cut(s)	119, 149, 221, 467, 1220, 1347, 2336
BshNI	GGYRCC	1 cut(s)	1036
BsiEI	CGRYCG	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	1078
BsiHKCI	CYCGRG	1 cut(s)	226
BsiSI	CCGG	6 cut(s)	227, 468, 551, 865, 1772, 2101
BslFI	GGGAC	2 cut(s)	98, 514
BslI	CCNNNNNNNGG	7 cut(s)	145, 232, 274, 680, 1354, 1639, 2244
BsmAI	GTCTC	3 cut(s)	476, 1602, 2110
BsmBI	CGTCTC	1 cut(s)	476
BsmFI	GGGAC	2 cut(s)	98, 514
BsmI	GAATGC	1 cut(s)	1398
BsnI	GGCC	7 cut(s)	119, 149, 221, 467, 1220, 1347, 2336
BsoBI	CYCGRG	1 cut(s)	226
Bsp119I	TTCGAA	1 cut(s)	2241
Bsp1286I	GDGCHC	1 cut(s)	1078
Bsp13I	TCCGGA	1 cut(s)	1771
BspACI	CCGC	7 cut(s)	62, 89, 91, 139, 166, 201, 1865
BspANI	GGCC	7 cut(s)	119, 149, 221, 467, 1220, 1347, 2336
BspCNI	CTCAG	4 cut(s)	352, 861, 1461, 2106
BspEI	TCCGGA	1 cut(s)	1771
BspFNI	CGCG	3 cut(s)	64, 91, 201
BspLI	GGNNCC	8 cut(s)	86, 87, 186, 1038, 1854, 1988, 2008, 2301
BspMAI	CTGCAG	2 cut(s)	1083, 1237
BspPI	GGATC	9 cut(s)	53, 155, 1802, 1847, 1856, 1860, 1946, 2294, 2307
BspQI	GCTCTTC	1 cut(s)	1536
BspT104I	TTCGAA	1 cut(s)	2241
BspT107I	GGYRCC	1 cut(s)	1036
BsrDI	GCAATG	1 cut(s)	561
BsrFI	RCCGGY	2 cut(s)	550, 864
BsrI	ACTGG	4 cut(s)	86, 1300, 1378, 2321
BssAI	RCCGGY	2 cut(s)	550, 864
BssECI	CCNNGG	7 cut(s)	89, 120, 180, 226, 1121, 1221, 2172
BssNAI	GTATAC	1 cut(s)	548
BssT1I	CCWWGG	1 cut(s)	120
Bst1107I	GTATAC	1 cut(s)	548
Bst2UI	CCWGG	4 cut(s)	617, 1122, 1349, 1936
Bst4CI	ACNGT	4 cut(s)	545, 1289, 1432, 1976
Bst6I	CTCTTC	6 cut(s)	330, 372, 399, 417, 1332, 1536
BstAPI	GCANNNNNTGC	2 cut(s)	1241, 2096
BstBI	TTCGAA	1 cut(s)	2241
BstC8I	GCNNGC	6 cut(s)	206, 603, 849, 866, 1394, 2106
BstDEI	CTNAG	7 cut(s)	360, 869, 977, 1448, 1476, 2114, 2311
BstDSI	CCRYGG	1 cut(s)	89
BstEII	GGTNACC	2 cut(s)	1360, 2129
BstENI	CCTNNNNNAGG	1 cut(s)	2242
BstFNI	CGCG	3 cut(s)	64, 91, 201
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	4 cut(s)	201, 238, 243, 1398
BstMAI	GTCTC	3 cut(s)	476, 1602, 2110
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	4 cut(s)	205, 1241, 2096, 2105
BstNI	CCWGG	4 cut(s)	617, 1122, 1349, 1936
BstPI	GGTNACC	2 cut(s)	1360, 2129
BstSCI	CCNGG	7 cut(s)	225, 226, 615, 1120, 1347, 1934, 2099
BstSFI	CTRYAG	3 cut(s)	885, 1079, 1233
BstUI	CGCG	3 cut(s)	64, 91, 201
BstV1I	GCAGC	4 cut(s)	225, 1093, 1219, 2120
BstV2I	GAAGAC	2 cut(s)	324, 1970
BstX2I	RGATCY	5 cut(s)	1807, 1852, 1861, 1938, 2299
BstXI	CCANNNNNNTGG	1 cut(s)	1942
BstYI	RGATCY	5 cut(s)	1807, 1852, 1861, 1938, 2299
BstZ17I	GTATAC	1 cut(s)	548
BsuI	GTATCC	3 cut(s)	487, 717, 1715
BsuRI	GGCC	7 cut(s)	119, 149, 221, 467, 1220, 1347, 2336
BtgI	CCRYGG	1 cut(s)	89
BtrI	CACGTC	1 cut(s)	1460
BtsI	GCAGTG	2 cut(s)	1149, 1634
BtsIMutI	CAGTG	5 cut(s)	79, 156, 1149, 1634, 2111
Cac8I	GCNNGC	6 cut(s)	206, 603, 849, 866, 1394, 2106
CfoI	GCGC	4 cut(s)	201, 238, 243, 1398
Cfr10I	RCCGGY	2 cut(s)	550, 864
Cfr13I	GGNCC	4 cut(s)	85, 265, 755, 1131
Cfr42I	CCGCGG	1 cut(s)	92
Cfr9I	CCCGGG	1 cut(s)	226
Csp6I	GTAC	6 cut(s)	283, 874, 1037, 1285, 2165, 2315
CviAII	CATG	3 cut(s)	151, 752, 1825
CviQI	GTAC	6 cut(s)	283, 874, 1037, 1285, 2165, 2315
DdeI	CTNAG	7 cut(s)	360, 869, 977, 1448, 1476, 2114, 2311
DraI	TTTAAA	1 cut(s)	97
DraIII	CACNNNGTG	1 cut(s)	1019
EaeI	YGGCCR	2 cut(s)	465, 1345
Eam1104I	CTCTTC	6 cut(s)	330, 372, 399, 417, 1332, 1536
EarI	CTCTTC	6 cut(s)	330, 372, 399, 417, 1332, 1536
Ecl136II	GAGCTC	1 cut(s)	1076
Eco130I	CCWWGG	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	1078
Eco47I	GGWCC	4 cut(s)	85, 265, 755, 1131
Eco53kI	GAGCTC	1 cut(s)	1076
Eco57I	CTGAAG	1 cut(s)	1557
Eco88I	CYCGRG	1 cut(s)	226
Eco91I	GGTNACC	2 cut(s)	1360, 2129
EcoICRI	GAGCTC	1 cut(s)	1076
EcoNI	CCTNNNNNAGG	1 cut(s)	2242
EcoO109I	RGGNCCY	2 cut(s)	85, 1131
EcoO65I	GGTNACC	2 cut(s)	1360, 2129
EcoRI	GAATTC	1 cut(s)	723
EcoRII	CCWGG	4 cut(s)	615, 1120, 1347, 1934
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	1078
ErhI	CCWWGG	1 cut(s)	120
Esp3I	CGTCTC	1 cut(s)	476
FaeI	CATG	3 cut(s)	154, 755, 1828
FaqI	GGGAC	2 cut(s)	98, 514
FatI	CATG	3 cut(s)	150, 751, 1824
FauI	CCCGC	2 cut(s)	96, 173
FauNDI	CATATG	1 cut(s)	2095
FbaI	TGATCA	2 cut(s)	1156, 1525
FblI	GTMKAC	2 cut(s)	547, 1971
Fnu4HI	GCNGC	5 cut(s)	202, 239, 1082, 1233, 2109
FriOI	GRGCYC	1 cut(s)	1078
Fsp4HI	GCNGC	5 cut(s)	202, 239, 1082, 1233, 2109
FspBI	CTAG	1 cut(s)	1071
GlaI	GCGC	4 cut(s)	200, 237, 242, 1397
GluI	GCNGC	5 cut(s)	202, 239, 1082, 1233, 2109
GsuI	CTGGAG	1 cut(s)	1326
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	7 cut(s)	119, 149, 221, 467, 1220, 1347, 2336
HapII	CCGG	6 cut(s)	227, 468, 551, 865, 1772, 2101
HhaI	GCGC	4 cut(s)	201, 238, 243, 1398
Hin1II	CATG	3 cut(s)	154, 755, 1828
Hin6I	GCGC	4 cut(s)	199, 236, 241, 1396
HinP1I	GCGC	4 cut(s)	199, 236, 241, 1396
HincII	GTYRAC	3 cut(s)	613, 643, 1972
HindII	GTYRAC	3 cut(s)	613, 643, 1972
HinfI	GANTC	9 cut(s)	66, 476, 899, 981, 992, 1421, 1496, 1520, 1595
HpaI	GTTAAC	1 cut(s)	613
HpaII	CCGG	6 cut(s)	227, 468, 551, 865, 1772, 2101
HphI	GGTGA	9 cut(s)	46, 304, 379, 803, 1346, 1354, 1822, 1827, 2141
Hpy166II	GTNNAC	7 cut(s)	79, 156, 548, 613, 643, 1830, 1972
Hpy188III	TCNNGA	9 cut(s)	127, 211, 971, 1305, 1403, 1529, 1772, 1850, 1990
Hpy8I	GTNNAC	7 cut(s)	79, 156, 548, 613, 643, 1830, 1972
Hpy99I	CGWCG	6 cut(s)	137, 193, 335, 490, 493, 1976
HpyCH4III	ACNGT	4 cut(s)	545, 1289, 1432, 1976
HpyCH4IV	ACGT	2 cut(s)	1459, 1735
HpyCH4V	TGCA	9 cut(s)	559, 1028, 1081, 1235, 1244, 2082, 2090, 2146, 2263
HpyF10VI	GCNNNNNNNGC	4 cut(s)	205, 1241, 2096, 2105
HpyF3I	CTNAG	7 cut(s)	360, 869, 977, 1448, 1476, 2114, 2311
HpySE526I	ACGT	2 cut(s)	1459, 1735
Hsp92II	CATG	3 cut(s)	154, 755, 1828
HspAI	GCGC	4 cut(s)	199, 236, 241, 1396
KflI	GGGWCCC	1 cut(s)	85
Kpn2I	TCCGGA	1 cut(s)	1771
KpnI	GGTACC	1 cut(s)	1040
KroI	GCCGGC	1 cut(s)	864
KroNI	GCCGGC	1 cut(s)	866
Ksp22I	TGATCA	2 cut(s)	1156, 1525
KspAI	GTTAAC	1 cut(s)	613
KspI	CCGCGG	1 cut(s)	92
LguI	GCTCTTC	1 cut(s)	1536
LmnI	GCTCC	4 cut(s)	109, 190, 1700, 2012
Lsp1109I	GCAGC	4 cut(s)	225, 1093, 1219, 2120
LweI	GCATC	3 cut(s)	1018, 1231, 1429
MaeI	CTAG	1 cut(s)	1071
MaeII	ACGT	2 cut(s)	1459, 1735
MaeIII	GTNAC	5 cut(s)	896, 1360, 1610, 2054, 2129
MfeI	CAATTG	1 cut(s)	903
MflI	RGATCY	5 cut(s)	1807, 1852, 1861, 1938, 2299
MhlI	GDGCHC	1 cut(s)	1078
MlsI	TGGCCA	1 cut(s)	1347
MluNI	TGGCCA	1 cut(s)	1347
MlyI	GAGTC	2 cut(s)	893, 1604
MmeI	TCCRAC	3 cut(s)	171, 1880, 2323
Mox20I	TGGCCA	1 cut(s)	1347
MroI	TCCGGA	1 cut(s)	1771
MroNI	GCCGGC	1 cut(s)	864
MroXI	GAANNNNTTC	1 cut(s)	747
MscI	TGGCCA	1 cut(s)	1347
Msp20I	TGGCCA	1 cut(s)	1347
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	6 cut(s)	227, 468, 551, 865, 1772, 2101
MspR9I	CCNGG	7 cut(s)	227, 228, 617, 1122, 1349, 1936, 2101
MteI	GCGCNGCGC	1 cut(s)	239
MunI	CAATTG	1 cut(s)	903
Mva1269I	GAATGC	1 cut(s)	1398
MvaI	CCWGG	4 cut(s)	617, 1122, 1349, 1936
MvnI	CGCG	3 cut(s)	64, 91, 201
MwoI	GCNNNNNNNGC	4 cut(s)	205, 1241, 2096, 2105
NaeI	GCCGGC	1 cut(s)	866
NciI	CCSGG	3 cut(s)	227, 228, 2101
NdeI	CATATG	1 cut(s)	2095
NgoMIV	GCCGGC	1 cut(s)	864
NlaIII	CATG	3 cut(s)	154, 755, 1828
NlaIV	GGNNCC	8 cut(s)	86, 87, 186, 1038, 1854, 1988, 2008, 2301
NmeAIII	GCCGAG	2 cut(s)	161, 1246
NmuCI	GTSAC	3 cut(s)	896, 1360, 2129
NspV	TTCGAA	1 cut(s)	2241
PciSI	GCTCTTC	1 cut(s)	1536
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 327, 485
PctI	GAATGC	1 cut(s)	1398
PdiI	GCCGGC	1 cut(s)	866
PdmI	GAANNNNTTC	1 cut(s)	747
PfeI	GAWTC	7 cut(s)	66, 476, 981, 992, 1421, 1496, 1520
PflMI	CCANNNNNTGG	2 cut(s)	1354, 1639
PkrI	GCNGC	5 cut(s)	203, 240, 1083, 1234, 2110
PleI	GAGTC	2 cut(s)	893, 1603
PpsI	GAGTC	2 cut(s)	893, 1603
PpuMI	RGGWCCY	2 cut(s)	85, 1131
PshBI	ATTAAT	2 cut(s)	834, 2207
Psp124BI	GAGCTC	1 cut(s)	1078
Psp5II	RGGWCCY	2 cut(s)	85, 1131
Psp6I	CCWGG	4 cut(s)	615, 1120, 1347, 1934
PspEI	GGTNACC	2 cut(s)	1360, 2129
PspGI	CCWGG	4 cut(s)	615, 1120, 1347, 1934
PspN4I	GGNNCC	8 cut(s)	86, 87, 186, 1038, 1854, 1988, 2008, 2301
PspPI	GGNCC	4 cut(s)	85, 265, 755, 1131
PspPPI	RGGWCCY	2 cut(s)	85, 1131
PstI	CTGCAG	2 cut(s)	1083, 1237
PsuI	RGATCY	5 cut(s)	1807, 1852, 1861, 1938, 2299
RsaI	GTAC	6 cut(s)	284, 875, 1038, 1286, 2166, 2316
RsaNI	GTAC	6 cut(s)	283, 874, 1037, 1285, 2165, 2315
SacI	GAGCTC	1 cut(s)	1078
SacII	CCGCGG	1 cut(s)	92
SalI	GTCGAC	1 cut(s)	1970
SapI	GCTCTTC	1 cut(s)	1536
SatI	GCNGC	5 cut(s)	202, 239, 1082, 1233, 2109
Sau96I	GGNCC	4 cut(s)	85, 265, 755, 1131
SchI	GAGTC	2 cut(s)	893, 1604
ScrFI	CCNGG	7 cut(s)	227, 228, 617, 1122, 1349, 1936, 2101
SduI	GDGCHC	1 cut(s)	1078
SfaNI	GCATC	3 cut(s)	1018, 1231, 1429
SfcI	CTRYAG	3 cut(s)	885, 1079, 1233
Sfr303I	CCGCGG	1 cut(s)	92
SfuI	TTCGAA	1 cut(s)	2241
SgrBI	CCGCGG	1 cut(s)	92
SinI	GGWCC	4 cut(s)	85, 265, 755, 1131
SmaI	CCCGGG	1 cut(s)	228
SmlI	CTYRAG	2 cut(s)	209, 1673
SmoI	CTYRAG	2 cut(s)	209, 1673
SsiI	CCGC	7 cut(s)	62, 89, 91, 139, 166, 201, 1865
SspI	AATATT	1 cut(s)	2050
SspMI	CTAG	1 cut(s)	1071
SstI	GAGCTC	1 cut(s)	1078
StyD4I	CCNGG	7 cut(s)	225, 226, 615, 1120, 1347, 1934, 2099
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	4 cut(s)	545, 1289, 1432, 1976
TaiI	ACGT	2 cut(s)	1462, 1738
TaqI	TCGA	5 cut(s)	8, 126, 132, 1971, 2241
TatI	WGTACW	2 cut(s)	2164, 2314
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	7 cut(s)	66, 476, 981, 992, 1421, 1496, 1520
TscAI	CASTG	5 cut(s)	86, 163, 1156, 1634, 2118
TseFI	GTSAC	3 cut(s)	896, 1360, 2129
TseI	GCWGC	4 cut(s)	238, 1081, 1232, 2108
Tsp45I	GTSAC	3 cut(s)	896, 1360, 2129
TspGWI	ACGGA	4 cut(s)	177, 506, 518, 1046
TspMI	CCCGGG	1 cut(s)	226
TspRI	CASTG	5 cut(s)	86, 163, 1156, 1634, 2118
Van91I	CCANNNNNTGG	2 cut(s)	1354, 1639
VpaK11BI	GGWCC	4 cut(s)	85, 265, 755, 1131
VspI	ATTAAT	2 cut(s)	834, 2207
XagI	CCTNNNNNAGG	1 cut(s)	2242
XapI	RAATTY	5 cut(s)	415, 723, 747, 1145, 2256
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1307
XmaI	CCCGGG	1 cut(s)	226
XmiI	GTMKAC	2 cut(s)	547, 1971
XmnI	GAANNNNTTC	1 cut(s)	747
XspI	CTAG	1 cut(s)	1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.