FvH4_1g11990

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
6554009 .. 6558266
4258 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11990.t3

Sequence Viewer

Length: 1476 bp
ATGAGAATGAATATGAAGCGATCGAGGAAATCAATTTCTTGGGCTCCTGGAGTTAAACTTTGTCAGGTGAAGCTATTCTCTTCTTTGGATTGTCCTGTGGAAGTTGGCATGAAATATCAAGGTCAGTTTAAAAAAAAGGCATCAAGTATGTTGCATTCGAGTTCTTTTGAAGCCAATGATAGCCCGCCTGGGTTTGAAGTCAGTATCTCTATGAAGCAATCTAAGCTGCAACATTTCCCCATCCCTCAGATCAAATGGCAATGCCCTCCCAAGCTTATTATGAGTGAGGACTGGTGTGTAGCGGCTGGTGAGGAAAGTGAAGAAGCCAAGACTCAAAAAATACGAGAGATGGCAGTGCTTGAGGCTGTATATCCTCGGTTTTCTGCAATTCCACCTAGCCCCGCTGTTTCTTTTGATGTAGAATGTGAGTGTTATGATCATAGCCTCACTCCTTGTGTCCCCATCAATCCAATTGAAGAAGAGTCCCAAGAAGATCAAGATCAAGAACATCTAACACCAGCAAACACCACAGTAGTATCTCAGCTACCGGGTTTTTCCCAAGGTCTGTTGGCATCTGGAACTGAAAATGCATCGGAGTCCAGCCCTCCTGGTTTTGAGCAAGCACATACACCAGGAAAGTTACCTAATCAAAGTGCTGATTTTACGGCTGTTGCCTCAGCTGCGTTAACCACAATGATGAAAAACAGCGAGAAAGAAAGTATGATCGATACTGATTTGCTTATTAAGATTCTGAACGATCCGAAAATGCTCCAGAAATTGATTAATGTACAAGGACCAGAAGCCAATACAGGAATTGCATCAATGAATACACTTACTGCACCAAATTCAAAGACGGTAACTCCCTATGTTCCCTCATCCCTTTCGAATTCTGATATGCCAAGGACACCTGGTGGTAACTTCCATATGCCAGGTAAAGTGGGTACTTTGAATGCAATCCCTCTTCAGCCAGAAACTGTTCAAGTATCTGGGTTAAAGCGATCTGCACCATCGCCACCGTTACCTTCCTTCTCCAGCCCTCAAGCTGACCATGCTATATTGCCTAGACTGCCAAATCAGACACAACCCCCATTAAGTATGTTACCTCAACAGAACATGGCTCCCATAGGATCTTTCTCAGTCCAGGAACCCGGAACTGTCAAGGACATGAACTACTATAAGAACCTCATTAGGCAACATGGAACAGATAATAAAGAAATGCAGGACCCCATTTTTCCTAAAATTGGTGATAATTTCTTGACGGACTTGAAAATGTCTGTAAACTCTAACCCACCGGAAATGAAGGCCAAGAATTTGAAACGTTGCATGTTTTTCAAAAGTGCCAAGGGGTGTCGTAAGGGTGCTAATTGTGAATACGTGCACGACATGTCGTTAAATTGGCGAACTGGTATGGAGGCCCAAAGTGCTAAGAGAATGAAACTAAATGGGGTCAATAATAAGGGGAGGGGTATGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

492

Amino Acids

53.94

Weight (kDa)

8.21

Isoelectric Point (pI)

53.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 185, 302, 402
AclI AACGTT 1 cut(s) 1318
AclWI GGATC 2 cut(s) 752, 1135
AcsI RAATTY 3 cut(s) 844, 886, 1309
AcuI CTGAAG 1 cut(s) 947
AdeI CACNNNGTG 1 cut(s) 911
AfaI GTAC 2 cut(s) 789, 943
AfiI CCNNNNNNNGG 1 cut(s) 1241
AflIII ACRYGT 1 cut(s) 1383
AgsI TTSAA 9 cut(s) 170, 197, 476, 849, 949, 980, 1267, 1315, 1333
AjnI CCWGG 7 cut(s) 46, 187, 607, 631, 907, 928, 1140
AluBI AGCT 6 cut(s) 73, 226, 274, 544, 680, 1043
AluI AGCT 6 cut(s) 73, 226, 274, 544, 680, 1043
Alw21I GWGCWC 1 cut(s) 1380
Alw44I GTGCAC 1 cut(s) 1376
AlwI GGATC 2 cut(s) 752, 1135
AlwNI CAGNNNCTG 1 cut(s) 974
AoxI GGCC 2 cut(s) 1302, 1413
ApaLI GTGCAC 1 cut(s) 1376
ApeKI GCWGC 2 cut(s) 226, 680
ApoI RAATTY 3 cut(s) 844, 886, 1309
AseI ATTAAT 1 cut(s) 783
Asp700I GAANNNNTTC 2 cut(s) 74, 975
AspS9I GGNCC 3 cut(s) 794, 1222, 1414
AsuC2I CCSGG 2 cut(s) 549, 1149
AsuHPI GGTGA 3 cut(s) 79, 320, 1256
AsuII TTCGAA 1 cut(s) 884
AvaII GGWCC 2 cut(s) 794, 1222
BaeGI GKGCMC 1 cut(s) 1380
BaeI ACNNNNGTAYC 2 cut(s) 519, 552
BanII GRGCYC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 1380
BbvCI CCTCAGC 1 cut(s) 676
BbvI GCAGC 2 cut(s) 213, 667
BccI CCATC 4 cut(s) 248, 343, 470, 1015
BceAI ACGGC 1 cut(s) 681
BciT130I CCWGG 7 cut(s) 48, 189, 609, 633, 909, 930, 1142
BclI TGATCA 1 cut(s) 436
BcnI CCSGG 2 cut(s) 549, 1149
BfaI CTAG 2 cut(s) 396, 1062
BisI GCNGC 3 cut(s) 227, 303, 681
BlsI GCNGC 3 cut(s) 228, 304, 682
Bme1390I CCNGG 9 cut(s) 48, 189, 549, 609, 633, 909, 930, 1142, 1149
Bme18I GGWCC 2 cut(s) 794, 1222
BmgT120I GGNCC 3 cut(s) 794, 1222, 1414
BmiI GGNNCC 4 cut(s) 45, 1119, 1146, 1224
BmrFI CCNGG 9 cut(s) 48, 189, 549, 609, 633, 909, 930, 1142, 1149
BmsI GCATC 4 cut(s) 149, 581, 599, 827
BpmI CTGGAG 3 cut(s) 69, 755, 1015
Bpu10I CCTNAGC 1 cut(s) 676
Bpu14I TTCGAA 1 cut(s) 884
BpuEI CTTGAG 2 cut(s) 380, 1023
BpuMI CCSGG 2 cut(s) 549, 1149
Bsa29I ATCGAT 1 cut(s) 726
BsaAI YACGTR 1 cut(s) 1375
BsaBI GATNNNNATC 1 cut(s) 498
BsaJI CCNNGG 5 cut(s) 188, 374, 559, 899, 1341
BsaWI WCCGGW 1 cut(s) 1291
BsaXI ACNNNNNCTCC 2 cut(s) 844, 874
Bsc4I CCNNNNNNNGG 1 cut(s) 1241
Bse1I ACTGG 2 cut(s) 296, 1408
Bse3DI GCAATG 1 cut(s) 266
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 7 cut(s) 48, 189, 609, 633, 909, 930, 1142
BseCI ATCGAT 1 cut(s) 726
BseDI CCNNGG 5 cut(s) 188, 374, 559, 899, 1341
BseGI GGATG 2 cut(s) 240, 875
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 1 cut(s) 1241
BseMI GCAATG 1 cut(s) 266
BseMII CTCAG 4 cut(s) 260, 554, 690, 1149
BseNI ACTGG 2 cut(s) 296, 1408
BseSI GKGCMC 1 cut(s) 1380
BseXI GCAGC 2 cut(s) 213, 667
BsgI GTGCAG 2 cut(s) 822, 987
Bsh1285I CGRYCG 1 cut(s) 23
BshFI GGCC 2 cut(s) 1304, 1415
BshVI ATCGAT 1 cut(s) 726
BsiEI CGRYCG 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 1380
BsiSI CCGG 3 cut(s) 548, 1149, 1292
BslFI GGGAC 2 cut(s) 443, 469
BslI CCNNNNNNNGG 1 cut(s) 1241
BsmFI GGGAC 2 cut(s) 443, 469
BsmI GAATGC 2 cut(s) 154, 955
BsnI GGCC 2 cut(s) 1304, 1415
Bsp119I TTCGAA 1 cut(s) 884
Bsp1286I GDGCHC 2 cut(s) 46, 1380
Bsp1407I TGTACA 1 cut(s) 787
Bsp143I GATC 9 cut(s) 20, 249, 436, 493, 499, 723, 757, 998, 1127
BspACI CCGC 3 cut(s) 185, 302, 402
BspANI GGCC 2 cut(s) 1304, 1415
BspCNI CTCAG 4 cut(s) 259, 553, 689, 1148
BspDI ATCGAT 1 cut(s) 726
BspLI GGNNCC 4 cut(s) 45, 1119, 1146, 1224
BspPI GGATC 2 cut(s) 752, 1135
BspT104I TTCGAA 1 cut(s) 884
BsrDI GCAATG 1 cut(s) 266
BsrGI TGTACA 1 cut(s) 787
BsrI ACTGG 2 cut(s) 296, 1408
BssECI CCNNGG 5 cut(s) 188, 374, 559, 899, 1341
BssMI GATC 9 cut(s) 20, 249, 436, 493, 499, 723, 757, 998, 1127
BssT1I CCWWGG 3 cut(s) 559, 899, 1341
Bst2UI CCWGG 7 cut(s) 48, 189, 609, 633, 909, 930, 1142
Bst4CI ACNGT 5 cut(s) 532, 856, 976, 1017, 1156
Bst6I CTCTTC 3 cut(s) 85, 474, 966
BstAUI TGTACA 1 cut(s) 787
BstBAI YACGTR 1 cut(s) 1375
BstBI TTCGAA 1 cut(s) 884
BstC8I GCNNGC 2 cut(s) 185, 621
BstDEI CTNAG 6 cut(s) 222, 246, 540, 676, 1135, 1425
BstF5I GGATG 2 cut(s) 240, 875
BstKTI GATC 9 cut(s) 23, 252, 439, 496, 502, 726, 760, 1001, 1130
BstMBI GATC 9 cut(s) 20, 249, 436, 493, 499, 723, 757, 998, 1127
BstMCI CGRYCG 1 cut(s) 23
BstMWI GCNNNNNNNGC 5 cut(s) 223, 680, 1049, 1066, 1421
BstNI CCWGG 7 cut(s) 48, 189, 609, 633, 909, 930, 1142
BstNSI RCATGY 2 cut(s) 1327, 1387
BstSCI CCNGG 9 cut(s) 46, 187, 547, 607, 631, 907, 928, 1140, 1147
BstSLI GKGCMC 1 cut(s) 1380
BstV1I GCAGC 2 cut(s) 213, 667
BstX2I RGATCY 1 cut(s) 1127
BstYI RGATCY 1 cut(s) 1127
Bsu15I ATCGAT 1 cut(s) 726
BsuRI GGCC 2 cut(s) 1304, 1415
BsuTUI ATCGAT 1 cut(s) 726
BtgZI GCGATG 1 cut(s) 993
BtsCI GGATG 2 cut(s) 240, 875
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 2 cut(s) 185, 621
CaiI CAGNNNCTG 1 cut(s) 974
Cfr13I GGNCC 3 cut(s) 794, 1222, 1414
ClaI ATCGAT 1 cut(s) 726
CsiI ACCWGGT 1 cut(s) 907
Csp6I GTAC 2 cut(s) 788, 942
CviAII CATG 7 cut(s) 109, 1049, 1114, 1165, 1196, 1324, 1384
CviQI GTAC 2 cut(s) 788, 942
DdeI CTNAG 6 cut(s) 222, 246, 540, 676, 1135, 1425
DpnI GATC 9 cut(s) 22, 251, 438, 495, 501, 725, 759, 1000, 1129
DpnII GATC 9 cut(s) 20, 249, 436, 493, 499, 723, 757, 998, 1127
DraI TTTAAA 1 cut(s) 130
DraIII CACNNNGTG 1 cut(s) 911
Eam1104I CTCTTC 3 cut(s) 85, 474, 966
EarI CTCTTC 3 cut(s) 85, 474, 966
Eco130I CCWWGG 3 cut(s) 559, 899, 1341
Eco24I GRGCYC 1 cut(s) 46
Eco47I GGWCC 2 cut(s) 794, 1222
Eco57I CTGAAG 1 cut(s) 947
EcoO109I RGGNCCY 1 cut(s) 1222
EcoRI GAATTC 1 cut(s) 886
EcoRII CCWGG 7 cut(s) 46, 187, 607, 631, 907, 928, 1140
EcoT14I CCWWGG 3 cut(s) 559, 899, 1341
EcoT22I ATGCAT 1 cut(s) 592
EcoT38I GRGCYC 1 cut(s) 46
ErhI CCWWGG 3 cut(s) 559, 899, 1341
FaeI CATG 7 cut(s) 112, 1052, 1117, 1168, 1199, 1327, 1387
FaqI GGGAC 2 cut(s) 443, 469
FatI CATG 7 cut(s) 108, 1048, 1113, 1164, 1195, 1323, 1383
FauI CCCGC 2 cut(s) 192, 409
FauNDI CATATG 1 cut(s) 924
FbaI TGATCA 1 cut(s) 436
Fnu4HI GCNGC 3 cut(s) 227, 303, 681
FokI GGATG 2 cut(s) 227, 862
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 3 cut(s) 227, 303, 681
FspBI CTAG 2 cut(s) 396, 1062
GluI GCNGC 3 cut(s) 227, 303, 681
GsuI CTGGAG 3 cut(s) 69, 755, 1015
HaeIII GGCC 2 cut(s) 1304, 1415
HapII CCGG 3 cut(s) 548, 1149, 1292
Hin1II CATG 7 cut(s) 112, 1052, 1117, 1168, 1199, 1327, 1387
HincII GTYRAC 1 cut(s) 687
HindII GTYRAC 1 cut(s) 687
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 4 cut(s) 331, 482, 596, 748
HpaI GTTAAC 1 cut(s) 687
HpaII CCGG 3 cut(s) 548, 1149, 1292
HphI GGTGA 3 cut(s) 79, 320, 1256
Hpy166II GTNNAC 3 cut(s) 687, 1279, 1378
Hpy188I TCNGA 6 cut(s) 249, 595, 753, 762, 892, 1077
Hpy188III TCNNGA 5 cut(s) 497, 503, 576, 772, 1255
Hpy8I GTNNAC 3 cut(s) 687, 1279, 1378
HpyAV CCTTC 3 cut(s) 1032, 1036, 1294
HpyCH4III ACNGT 5 cut(s) 532, 856, 976, 1017, 1156
HpyCH4IV ACGT 2 cut(s) 1318, 1374
HpyF10VI GCNNNNNNNGC 5 cut(s) 223, 680, 1049, 1066, 1421
HpyF3I CTNAG 6 cut(s) 222, 246, 540, 676, 1135, 1425
HpySE526I ACGT 2 cut(s) 1318, 1374
Hsp92II CATG 7 cut(s) 112, 1052, 1117, 1168, 1199, 1327, 1387
Ksp22I TGATCA 1 cut(s) 436
KspAI GTTAAC 1 cut(s) 687
Kzo9I GATC 9 cut(s) 20, 249, 436, 493, 499, 723, 757, 998, 1127
LmnI GCTCC 3 cut(s) 49, 774, 1123
Lsp1109I GCAGC 2 cut(s) 213, 667
LweI GCATC 4 cut(s) 149, 581, 599, 827
MabI ACCWGGT 1 cut(s) 907
MaeI CTAG 2 cut(s) 396, 1062
MaeII ACGT 2 cut(s) 1318, 1374
MaeIII GTNAC 5 cut(s) 639, 856, 914, 1017, 1098
MalI GATC 9 cut(s) 22, 251, 438, 495, 501, 725, 759, 1000, 1129
MboI GATC 9 cut(s) 20, 249, 436, 493, 499, 723, 757, 998, 1127
MboII GAAGA 6 cut(s) 72, 332, 488, 491, 503, 953
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 1 cut(s) 1127
MhlI GDGCHC 2 cut(s) 46, 1380
MlyI GAGTC 3 cut(s) 325, 491, 605
Mph1103I ATGCAT 1 cut(s) 592
MroXI GAANNNNTTC 2 cut(s) 74, 975
MseI TTAA 8 cut(s) 54, 129, 686, 744, 783, 992, 1091, 1391
MslI CAYNNNNRTG 1 cut(s) 695
MspA1I CMGCKG 2 cut(s) 404, 680
MspI CCGG 3 cut(s) 548, 1149, 1292
MspR9I CCNGG 9 cut(s) 48, 189, 549, 609, 633, 909, 930, 1142, 1149
MunI CAATTG 1 cut(s) 471
Mva1269I GAATGC 2 cut(s) 154, 955
MvaI CCWGG 7 cut(s) 48, 189, 609, 633, 909, 930, 1142
MwoI GCNNNNNNNGC 5 cut(s) 223, 680, 1049, 1066, 1421
NciI CCSGG 2 cut(s) 549, 1149
NdeI CATATG 1 cut(s) 924
NdeII GATC 9 cut(s) 20, 249, 436, 493, 499, 723, 757, 998, 1127
NlaIII CATG 7 cut(s) 112, 1052, 1117, 1168, 1199, 1327, 1387
NlaIV GGNNCC 4 cut(s) 45, 1119, 1146, 1224
NsiI ATGCAT 1 cut(s) 592
NspI RCATGY 2 cut(s) 1327, 1387
NspV TTCGAA 1 cut(s) 884
PciI ACATGT 1 cut(s) 1383
PctI GAATGC 2 cut(s) 154, 955
PdmI GAANNNNTTC 2 cut(s) 74, 975
PfeI GAWTC 1 cut(s) 748
PfoI TCCNGGA 2 cut(s) 46, 1140
PkrI GCNGC 3 cut(s) 228, 304, 682
Ple19I CGATCG 1 cut(s) 23
PleI GAGTC 3 cut(s) 325, 490, 604
PpsI GAGTC 3 cut(s) 325, 490, 604
Ppu21I YACGTR 1 cut(s) 1375
PpuMI RGGWCCY 1 cut(s) 1222
PscI ACATGT 1 cut(s) 1383
PshBI ATTAAT 1 cut(s) 783
Psp1406I AACGTT 1 cut(s) 1318
Psp5II RGGWCCY 1 cut(s) 1222
Psp6I CCWGG 7 cut(s) 46, 187, 607, 631, 907, 928, 1140
PspGI CCWGG 7 cut(s) 46, 187, 607, 631, 907, 928, 1140
PspN4I GGNNCC 4 cut(s) 45, 1119, 1146, 1224
PspPI GGNCC 3 cut(s) 794, 1222, 1414
PspPPI RGGWCCY 1 cut(s) 1222
PstNI CAGNNNCTG 1 cut(s) 974
PsuI RGATCY 1 cut(s) 1127
PvuI CGATCG 1 cut(s) 23
PvuII CAGCTG 1 cut(s) 680
RsaI GTAC 2 cut(s) 789, 943
RsaNI GTAC 2 cut(s) 788, 942
RseI CAYNNNNRTG 1 cut(s) 695
SaqAI TTAA 8 cut(s) 54, 129, 686, 744, 783, 992, 1091, 1391
SatI GCNGC 3 cut(s) 227, 303, 681
Sau3AI GATC 9 cut(s) 20, 249, 436, 493, 499, 723, 757, 998, 1127
Sau96I GGNCC 3 cut(s) 794, 1222, 1414
SchI GAGTC 3 cut(s) 325, 491, 605
ScrFI CCNGG 9 cut(s) 48, 189, 549, 609, 633, 909, 930, 1142, 1149
SduI GDGCHC 2 cut(s) 46, 1380
SexAI ACCWGGT 1 cut(s) 907
SfaNI GCATC 4 cut(s) 149, 581, 599, 827
SfuI TTCGAA 1 cut(s) 884
SinI GGWCC 2 cut(s) 794, 1222
SmiMI CAYNNNNRTG 1 cut(s) 695
SmlI CTYRAG 2 cut(s) 359, 1038
SmoI CTYRAG 2 cut(s) 359, 1038
SsiI CCGC 3 cut(s) 185, 302, 402
SspMI CTAG 2 cut(s) 396, 1062
StyD4I CCNGG 9 cut(s) 46, 187, 547, 607, 631, 907, 928, 1140, 1147
StyI CCWWGG 3 cut(s) 559, 899, 1341
TaaI ACNGT 5 cut(s) 532, 856, 976, 1017, 1156
TaiI ACGT 2 cut(s) 1321, 1377
TaqI TCGA 4 cut(s) 23, 158, 726, 884
TatI WGTACW 1 cut(s) 787
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 1 cut(s) 748
Tru1I TTAA 8 cut(s) 54, 129, 686, 744, 783, 992, 1091, 1391
Tru9I TTAA 8 cut(s) 54, 129, 686, 744, 783, 992, 1091, 1391
TscAI CASTG 1 cut(s) 360
TseI GCWGC 2 cut(s) 226, 680
TspDTI ATGAA 9 cut(s) 23, 29, 125, 227, 713, 839, 1181, 1313, 1448
TspGWI ACGGA 1 cut(s) 1274
TspRI CASTG 1 cut(s) 360
VneI GTGCAC 1 cut(s) 1376
VpaK11BI GGWCC 2 cut(s) 794, 1222
VspI ATTAAT 1 cut(s) 783
XapI RAATTY 3 cut(s) 844, 886, 1309
XceI RCATGY 2 cut(s) 1327, 1387
XmnI GAANNNNTTC 2 cut(s) 74, 975
XspI CTAG 2 cut(s) 396, 1062
Zsp2I ATGCAT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.