zinc finger CCCH domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g11990 FvH4_1g11990 FvH4_1g11990 FvH4_1g11990 FvH4_1g11990 |
| malus_domestica | MD02G1134000.v1.1 MD15G1247000.v1.1 |
| prunus_persica | Prupe.7G166800_v2.0.a1 |
| pyrus_communis | pycom02g10560 pycom15g21720 |
| rosa_chinensis | RchiOBHm_Chr2g0099611 |
| rosa_laevigata | RLG00000016896 |
| rosa_multiflora | Rmu_sc0005120.1_g000013 |
| rosa_roxburghii | Rroxscaffold_2G00142920 |
| rosa_rugosa | Rorug02G0081500 |
| rosa_samantha | Rh2AG131000 Rh2BG134200 Rh2CG135100 Rh2DG135600 |
| rosa_wichuraiana | Rw2G010110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 185, 302, 402 |
| AclI | AACGTT | 1 cut(s) | 1318 |
| AclWI | GGATC | 2 cut(s) | 752, 1135 |
| AcsI | RAATTY | 3 cut(s) | 844, 886, 1309 |
| AcuI | CTGAAG | 1 cut(s) | 947 |
| AdeI | CACNNNGTG | 1 cut(s) | 911 |
| AfaI | GTAC | 2 cut(s) | 789, 943 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1241 |
| AflIII | ACRYGT | 1 cut(s) | 1383 |
| AgsI | TTSAA | 9 cut(s) | 170, 197, 476, 849, 949, 980, 1267, 1315, 1333 |
| AjnI | CCWGG | 7 cut(s) | 46, 187, 607, 631, 907, 928, 1140 |
| AluBI | AGCT | 6 cut(s) | 73, 226, 274, 544, 680, 1043 |
| AluI | AGCT | 6 cut(s) | 73, 226, 274, 544, 680, 1043 |
| Alw21I | GWGCWC | 1 cut(s) | 1380 |
| Alw44I | GTGCAC | 1 cut(s) | 1376 |
| AlwI | GGATC | 2 cut(s) | 752, 1135 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 974 |
| AoxI | GGCC | 2 cut(s) | 1302, 1413 |
| ApaLI | GTGCAC | 1 cut(s) | 1376 |
| ApeKI | GCWGC | 2 cut(s) | 226, 680 |
| ApoI | RAATTY | 3 cut(s) | 844, 886, 1309 |
| AseI | ATTAAT | 1 cut(s) | 783 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 74, 975 |
| AspS9I | GGNCC | 3 cut(s) | 794, 1222, 1414 |
| AsuC2I | CCSGG | 2 cut(s) | 549, 1149 |
| AsuHPI | GGTGA | 3 cut(s) | 79, 320, 1256 |
| AsuII | TTCGAA | 1 cut(s) | 884 |
| AvaII | GGWCC | 2 cut(s) | 794, 1222 |
| BaeGI | GKGCMC | 1 cut(s) | 1380 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 519, 552 |
| BanII | GRGCYC | 1 cut(s) | 46 |
| Bbv12I | GWGCWC | 1 cut(s) | 1380 |
| BbvCI | CCTCAGC | 1 cut(s) | 676 |
| BbvI | GCAGC | 2 cut(s) | 213, 667 |
| BccI | CCATC | 4 cut(s) | 248, 343, 470, 1015 |
| BceAI | ACGGC | 1 cut(s) | 681 |
| BciT130I | CCWGG | 7 cut(s) | 48, 189, 609, 633, 909, 930, 1142 |
| BclI | TGATCA | 1 cut(s) | 436 |
| BcnI | CCSGG | 2 cut(s) | 549, 1149 |
| BfaI | CTAG | 2 cut(s) | 396, 1062 |
| BisI | GCNGC | 3 cut(s) | 227, 303, 681 |
| BlsI | GCNGC | 3 cut(s) | 228, 304, 682 |
| Bme1390I | CCNGG | 9 cut(s) | 48, 189, 549, 609, 633, 909, 930, 1142, 1149 |
| Bme18I | GGWCC | 2 cut(s) | 794, 1222 |
| BmgT120I | GGNCC | 3 cut(s) | 794, 1222, 1414 |
| BmiI | GGNNCC | 4 cut(s) | 45, 1119, 1146, 1224 |
| BmrFI | CCNGG | 9 cut(s) | 48, 189, 549, 609, 633, 909, 930, 1142, 1149 |
| BmsI | GCATC | 4 cut(s) | 149, 581, 599, 827 |
| BpmI | CTGGAG | 3 cut(s) | 69, 755, 1015 |
| Bpu10I | CCTNAGC | 1 cut(s) | 676 |
| Bpu14I | TTCGAA | 1 cut(s) | 884 |
| BpuEI | CTTGAG | 2 cut(s) | 380, 1023 |
| BpuMI | CCSGG | 2 cut(s) | 549, 1149 |
| Bsa29I | ATCGAT | 1 cut(s) | 726 |
| BsaAI | YACGTR | 1 cut(s) | 1375 |
| BsaBI | GATNNNNATC | 1 cut(s) | 498 |
| BsaJI | CCNNGG | 5 cut(s) | 188, 374, 559, 899, 1341 |
| BsaWI | WCCGGW | 1 cut(s) | 1291 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 844, 874 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1241 |
| Bse1I | ACTGG | 2 cut(s) | 296, 1408 |
| Bse3DI | GCAATG | 1 cut(s) | 266 |
| Bse8I | GATNNNNATC | 1 cut(s) | 498 |
| BseBI | CCWGG | 7 cut(s) | 48, 189, 609, 633, 909, 930, 1142 |
| BseCI | ATCGAT | 1 cut(s) | 726 |
| BseDI | CCNNGG | 5 cut(s) | 188, 374, 559, 899, 1341 |
| BseGI | GGATG | 2 cut(s) | 240, 875 |
| BseJI | GATNNNNATC | 1 cut(s) | 498 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1241 |
| BseMI | GCAATG | 1 cut(s) | 266 |
| BseMII | CTCAG | 4 cut(s) | 260, 554, 690, 1149 |
| BseNI | ACTGG | 2 cut(s) | 296, 1408 |
| BseSI | GKGCMC | 1 cut(s) | 1380 |
| BseXI | GCAGC | 2 cut(s) | 213, 667 |
| BsgI | GTGCAG | 2 cut(s) | 822, 987 |
| Bsh1285I | CGRYCG | 1 cut(s) | 23 |
| BshFI | GGCC | 2 cut(s) | 1304, 1415 |
| BshVI | ATCGAT | 1 cut(s) | 726 |
| BsiEI | CGRYCG | 1 cut(s) | 23 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1380 |
| BsiSI | CCGG | 3 cut(s) | 548, 1149, 1292 |
| BslFI | GGGAC | 2 cut(s) | 443, 469 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1241 |
| BsmFI | GGGAC | 2 cut(s) | 443, 469 |
| BsmI | GAATGC | 2 cut(s) | 154, 955 |
| BsnI | GGCC | 2 cut(s) | 1304, 1415 |
| Bsp119I | TTCGAA | 1 cut(s) | 884 |
| Bsp1286I | GDGCHC | 2 cut(s) | 46, 1380 |
| Bsp1407I | TGTACA | 1 cut(s) | 787 |
| Bsp143I | GATC | 9 cut(s) | 20, 249, 436, 493, 499, 723, 757, 998, 1127 |
| BspACI | CCGC | 3 cut(s) | 185, 302, 402 |
| BspANI | GGCC | 2 cut(s) | 1304, 1415 |
| BspCNI | CTCAG | 4 cut(s) | 259, 553, 689, 1148 |
| BspDI | ATCGAT | 1 cut(s) | 726 |
| BspLI | GGNNCC | 4 cut(s) | 45, 1119, 1146, 1224 |
| BspPI | GGATC | 2 cut(s) | 752, 1135 |
| BspT104I | TTCGAA | 1 cut(s) | 884 |
| BsrDI | GCAATG | 1 cut(s) | 266 |
| BsrGI | TGTACA | 1 cut(s) | 787 |
| BsrI | ACTGG | 2 cut(s) | 296, 1408 |
| BssECI | CCNNGG | 5 cut(s) | 188, 374, 559, 899, 1341 |
| BssMI | GATC | 9 cut(s) | 20, 249, 436, 493, 499, 723, 757, 998, 1127 |
| BssT1I | CCWWGG | 3 cut(s) | 559, 899, 1341 |
| Bst2UI | CCWGG | 7 cut(s) | 48, 189, 609, 633, 909, 930, 1142 |
| Bst4CI | ACNGT | 5 cut(s) | 532, 856, 976, 1017, 1156 |
| Bst6I | CTCTTC | 3 cut(s) | 85, 474, 966 |
| BstAUI | TGTACA | 1 cut(s) | 787 |
| BstBAI | YACGTR | 1 cut(s) | 1375 |
| BstBI | TTCGAA | 1 cut(s) | 884 |
| BstC8I | GCNNGC | 2 cut(s) | 185, 621 |
| BstDEI | CTNAG | 6 cut(s) | 222, 246, 540, 676, 1135, 1425 |
| BstF5I | GGATG | 2 cut(s) | 240, 875 |
| BstKTI | GATC | 9 cut(s) | 23, 252, 439, 496, 502, 726, 760, 1001, 1130 |
| BstMBI | GATC | 9 cut(s) | 20, 249, 436, 493, 499, 723, 757, 998, 1127 |
| BstMCI | CGRYCG | 1 cut(s) | 23 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 223, 680, 1049, 1066, 1421 |
| BstNI | CCWGG | 7 cut(s) | 48, 189, 609, 633, 909, 930, 1142 |
| BstNSI | RCATGY | 2 cut(s) | 1327, 1387 |
| BstSCI | CCNGG | 9 cut(s) | 46, 187, 547, 607, 631, 907, 928, 1140, 1147 |
| BstSLI | GKGCMC | 1 cut(s) | 1380 |
| BstV1I | GCAGC | 2 cut(s) | 213, 667 |
| BstX2I | RGATCY | 1 cut(s) | 1127 |
| BstYI | RGATCY | 1 cut(s) | 1127 |
| Bsu15I | ATCGAT | 1 cut(s) | 726 |
| BsuRI | GGCC | 2 cut(s) | 1304, 1415 |
| BsuTUI | ATCGAT | 1 cut(s) | 726 |
| BtgZI | GCGATG | 1 cut(s) | 993 |
| BtsCI | GGATG | 2 cut(s) | 240, 875 |
| BtsI | GCAGTG | 1 cut(s) | 360 |
| BtsIMutI | CAGTG | 1 cut(s) | 360 |
| Cac8I | GCNNGC | 2 cut(s) | 185, 621 |
| CaiI | CAGNNNCTG | 1 cut(s) | 974 |
| Cfr13I | GGNCC | 3 cut(s) | 794, 1222, 1414 |
| ClaI | ATCGAT | 1 cut(s) | 726 |
| CsiI | ACCWGGT | 1 cut(s) | 907 |
| Csp6I | GTAC | 2 cut(s) | 788, 942 |
| CviAII | CATG | 7 cut(s) | 109, 1049, 1114, 1165, 1196, 1324, 1384 |
| CviQI | GTAC | 2 cut(s) | 788, 942 |
| DdeI | CTNAG | 6 cut(s) | 222, 246, 540, 676, 1135, 1425 |
| DpnI | GATC | 9 cut(s) | 22, 251, 438, 495, 501, 725, 759, 1000, 1129 |
| DpnII | GATC | 9 cut(s) | 20, 249, 436, 493, 499, 723, 757, 998, 1127 |
| DraI | TTTAAA | 1 cut(s) | 130 |
| DraIII | CACNNNGTG | 1 cut(s) | 911 |
| Eam1104I | CTCTTC | 3 cut(s) | 85, 474, 966 |
| EarI | CTCTTC | 3 cut(s) | 85, 474, 966 |
| Eco130I | CCWWGG | 3 cut(s) | 559, 899, 1341 |
| Eco24I | GRGCYC | 1 cut(s) | 46 |
| Eco47I | GGWCC | 2 cut(s) | 794, 1222 |
| Eco57I | CTGAAG | 1 cut(s) | 947 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1222 |
| EcoRI | GAATTC | 1 cut(s) | 886 |
| EcoRII | CCWGG | 7 cut(s) | 46, 187, 607, 631, 907, 928, 1140 |
| EcoT14I | CCWWGG | 3 cut(s) | 559, 899, 1341 |
| EcoT22I | ATGCAT | 1 cut(s) | 592 |
| EcoT38I | GRGCYC | 1 cut(s) | 46 |
| ErhI | CCWWGG | 3 cut(s) | 559, 899, 1341 |
| FaeI | CATG | 7 cut(s) | 112, 1052, 1117, 1168, 1199, 1327, 1387 |
| FaqI | GGGAC | 2 cut(s) | 443, 469 |
| FatI | CATG | 7 cut(s) | 108, 1048, 1113, 1164, 1195, 1323, 1383 |
| FauI | CCCGC | 2 cut(s) | 192, 409 |
| FauNDI | CATATG | 1 cut(s) | 924 |
| FbaI | TGATCA | 1 cut(s) | 436 |
| Fnu4HI | GCNGC | 3 cut(s) | 227, 303, 681 |
| FokI | GGATG | 2 cut(s) | 227, 862 |
| FriOI | GRGCYC | 1 cut(s) | 46 |
| Fsp4HI | GCNGC | 3 cut(s) | 227, 303, 681 |
| FspBI | CTAG | 2 cut(s) | 396, 1062 |
| GluI | GCNGC | 3 cut(s) | 227, 303, 681 |
| GsuI | CTGGAG | 3 cut(s) | 69, 755, 1015 |
| HaeIII | GGCC | 2 cut(s) | 1304, 1415 |
| HapII | CCGG | 3 cut(s) | 548, 1149, 1292 |
| Hin1II | CATG | 7 cut(s) | 112, 1052, 1117, 1168, 1199, 1327, 1387 |
| HincII | GTYRAC | 1 cut(s) | 687 |
| HindII | GTYRAC | 1 cut(s) | 687 |
| HindIII | AAGCTT | 1 cut(s) | 272 |
| HinfI | GANTC | 4 cut(s) | 331, 482, 596, 748 |
| HpaI | GTTAAC | 1 cut(s) | 687 |
| HpaII | CCGG | 3 cut(s) | 548, 1149, 1292 |
| HphI | GGTGA | 3 cut(s) | 79, 320, 1256 |
| Hpy166II | GTNNAC | 3 cut(s) | 687, 1279, 1378 |
| Hpy188I | TCNGA | 6 cut(s) | 249, 595, 753, 762, 892, 1077 |
| Hpy188III | TCNNGA | 5 cut(s) | 497, 503, 576, 772, 1255 |
| Hpy8I | GTNNAC | 3 cut(s) | 687, 1279, 1378 |
| HpyAV | CCTTC | 3 cut(s) | 1032, 1036, 1294 |
| HpyCH4III | ACNGT | 5 cut(s) | 532, 856, 976, 1017, 1156 |
| HpyCH4IV | ACGT | 2 cut(s) | 1318, 1374 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 223, 680, 1049, 1066, 1421 |
| HpyF3I | CTNAG | 6 cut(s) | 222, 246, 540, 676, 1135, 1425 |
| HpySE526I | ACGT | 2 cut(s) | 1318, 1374 |
| Hsp92II | CATG | 7 cut(s) | 112, 1052, 1117, 1168, 1199, 1327, 1387 |
| Ksp22I | TGATCA | 1 cut(s) | 436 |
| KspAI | GTTAAC | 1 cut(s) | 687 |
| Kzo9I | GATC | 9 cut(s) | 20, 249, 436, 493, 499, 723, 757, 998, 1127 |
| LmnI | GCTCC | 3 cut(s) | 49, 774, 1123 |
| Lsp1109I | GCAGC | 2 cut(s) | 213, 667 |
| LweI | GCATC | 4 cut(s) | 149, 581, 599, 827 |
| MabI | ACCWGGT | 1 cut(s) | 907 |
| MaeI | CTAG | 2 cut(s) | 396, 1062 |
| MaeII | ACGT | 2 cut(s) | 1318, 1374 |
| MaeIII | GTNAC | 5 cut(s) | 639, 856, 914, 1017, 1098 |
| MalI | GATC | 9 cut(s) | 22, 251, 438, 495, 501, 725, 759, 1000, 1129 |
| MboI | GATC | 9 cut(s) | 20, 249, 436, 493, 499, 723, 757, 998, 1127 |
| MboII | GAAGA | 6 cut(s) | 72, 332, 488, 491, 503, 953 |
| MfeI | CAATTG | 1 cut(s) | 471 |
| MflI | RGATCY | 1 cut(s) | 1127 |
| MhlI | GDGCHC | 2 cut(s) | 46, 1380 |
| MlyI | GAGTC | 3 cut(s) | 325, 491, 605 |
| Mph1103I | ATGCAT | 1 cut(s) | 592 |
| MroXI | GAANNNNTTC | 2 cut(s) | 74, 975 |
| MseI | TTAA | 8 cut(s) | 54, 129, 686, 744, 783, 992, 1091, 1391 |
| MslI | CAYNNNNRTG | 1 cut(s) | 695 |
| MspA1I | CMGCKG | 2 cut(s) | 404, 680 |
| MspI | CCGG | 3 cut(s) | 548, 1149, 1292 |
| MspR9I | CCNGG | 9 cut(s) | 48, 189, 549, 609, 633, 909, 930, 1142, 1149 |
| MunI | CAATTG | 1 cut(s) | 471 |
| Mva1269I | GAATGC | 2 cut(s) | 154, 955 |
| MvaI | CCWGG | 7 cut(s) | 48, 189, 609, 633, 909, 930, 1142 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 223, 680, 1049, 1066, 1421 |
| NciI | CCSGG | 2 cut(s) | 549, 1149 |
| NdeI | CATATG | 1 cut(s) | 924 |
| NdeII | GATC | 9 cut(s) | 20, 249, 436, 493, 499, 723, 757, 998, 1127 |
| NlaIII | CATG | 7 cut(s) | 112, 1052, 1117, 1168, 1199, 1327, 1387 |
| NlaIV | GGNNCC | 4 cut(s) | 45, 1119, 1146, 1224 |
| NsiI | ATGCAT | 1 cut(s) | 592 |
| NspI | RCATGY | 2 cut(s) | 1327, 1387 |
| NspV | TTCGAA | 1 cut(s) | 884 |
| PciI | ACATGT | 1 cut(s) | 1383 |
| PctI | GAATGC | 2 cut(s) | 154, 955 |
| PdmI | GAANNNNTTC | 2 cut(s) | 74, 975 |
| PfeI | GAWTC | 1 cut(s) | 748 |
| PfoI | TCCNGGA | 2 cut(s) | 46, 1140 |
| PkrI | GCNGC | 3 cut(s) | 228, 304, 682 |
| Ple19I | CGATCG | 1 cut(s) | 23 |
| PleI | GAGTC | 3 cut(s) | 325, 490, 604 |
| PpsI | GAGTC | 3 cut(s) | 325, 490, 604 |
| Ppu21I | YACGTR | 1 cut(s) | 1375 |
| PpuMI | RGGWCCY | 1 cut(s) | 1222 |
| PscI | ACATGT | 1 cut(s) | 1383 |
| PshBI | ATTAAT | 1 cut(s) | 783 |
| Psp1406I | AACGTT | 1 cut(s) | 1318 |
| Psp5II | RGGWCCY | 1 cut(s) | 1222 |
| Psp6I | CCWGG | 7 cut(s) | 46, 187, 607, 631, 907, 928, 1140 |
| PspGI | CCWGG | 7 cut(s) | 46, 187, 607, 631, 907, 928, 1140 |
| PspN4I | GGNNCC | 4 cut(s) | 45, 1119, 1146, 1224 |
| PspPI | GGNCC | 3 cut(s) | 794, 1222, 1414 |
| PspPPI | RGGWCCY | 1 cut(s) | 1222 |
| PstNI | CAGNNNCTG | 1 cut(s) | 974 |
| PsuI | RGATCY | 1 cut(s) | 1127 |
| PvuI | CGATCG | 1 cut(s) | 23 |
| PvuII | CAGCTG | 1 cut(s) | 680 |
| RsaI | GTAC | 2 cut(s) | 789, 943 |
| RsaNI | GTAC | 2 cut(s) | 788, 942 |
| RseI | CAYNNNNRTG | 1 cut(s) | 695 |
| SaqAI | TTAA | 8 cut(s) | 54, 129, 686, 744, 783, 992, 1091, 1391 |
| SatI | GCNGC | 3 cut(s) | 227, 303, 681 |
| Sau3AI | GATC | 9 cut(s) | 20, 249, 436, 493, 499, 723, 757, 998, 1127 |
| Sau96I | GGNCC | 3 cut(s) | 794, 1222, 1414 |
| SchI | GAGTC | 3 cut(s) | 325, 491, 605 |
| ScrFI | CCNGG | 9 cut(s) | 48, 189, 549, 609, 633, 909, 930, 1142, 1149 |
| SduI | GDGCHC | 2 cut(s) | 46, 1380 |
| SexAI | ACCWGGT | 1 cut(s) | 907 |
| SfaNI | GCATC | 4 cut(s) | 149, 581, 599, 827 |
| SfuI | TTCGAA | 1 cut(s) | 884 |
| SinI | GGWCC | 2 cut(s) | 794, 1222 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 695 |
| SmlI | CTYRAG | 2 cut(s) | 359, 1038 |
| SmoI | CTYRAG | 2 cut(s) | 359, 1038 |
| SsiI | CCGC | 3 cut(s) | 185, 302, 402 |
| SspMI | CTAG | 2 cut(s) | 396, 1062 |
| StyD4I | CCNGG | 9 cut(s) | 46, 187, 547, 607, 631, 907, 928, 1140, 1147 |
| StyI | CCWWGG | 3 cut(s) | 559, 899, 1341 |
| TaaI | ACNGT | 5 cut(s) | 532, 856, 976, 1017, 1156 |
| TaiI | ACGT | 2 cut(s) | 1321, 1377 |
| TaqI | TCGA | 4 cut(s) | 23, 158, 726, 884 |
| TatI | WGTACW | 1 cut(s) | 787 |
| TauI | GCSGC | 1 cut(s) | 305 |
| TfiI | GAWTC | 1 cut(s) | 748 |
| Tru1I | TTAA | 8 cut(s) | 54, 129, 686, 744, 783, 992, 1091, 1391 |
| Tru9I | TTAA | 8 cut(s) | 54, 129, 686, 744, 783, 992, 1091, 1391 |
| TscAI | CASTG | 1 cut(s) | 360 |
| TseI | GCWGC | 2 cut(s) | 226, 680 |
| TspDTI | ATGAA | 9 cut(s) | 23, 29, 125, 227, 713, 839, 1181, 1313, 1448 |
| TspGWI | ACGGA | 1 cut(s) | 1274 |
| TspRI | CASTG | 1 cut(s) | 360 |
| VneI | GTGCAC | 1 cut(s) | 1376 |
| VpaK11BI | GGWCC | 2 cut(s) | 794, 1222 |
| VspI | ATTAAT | 1 cut(s) | 783 |
| XapI | RAATTY | 3 cut(s) | 844, 886, 1309 |
| XceI | RCATGY | 2 cut(s) | 1327, 1387 |
| XmnI | GAANNNNTTC | 2 cut(s) | 74, 975 |
| XspI | CTAG | 2 cut(s) | 396, 1062 |
| Zsp2I | ATGCAT | 1 cut(s) | 592 |