Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011509

Physical Location & Seq

Genomic Coordinates Reverse (-)

11845265 .. 11851576

Gene Structure 6312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG131000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGAAATATCAAGGTCATTTTCAACCGAAGACATCAAGTATGTTGCATTCCAGTTCTTTTGAACCCAATGATAGCCCGCCTGGGTTTGAAGTAGGTATCTCTGTGAAGCAATCTAAGCTGCAACATTTCCCCATCCCTCAGATTAGGTGGCAATGCCCTTCCAAGCTTATTATGCGTGACGGCTGGCGTGTAGCATCTGGTGAGGAAAGTGAAGAAGCCAAGGCTCAAAAACTAAGAGAGATGAGAGTGCTTGAGGCAGTATATCCTCGTTTTTCTGCAATTCCACCTAGCCCCTCTGTTTCTTTGGACGTAGAAAGTGAGCATTATGATCATAGCCTCACTCCTTGTGTTCCCATCAATCCAATTGAAGAAGAGTCCCAAGAAGATCAAGAAGATCTAACACCAGTAAACACCACTGTAGTCTCTCAGCTACCAGGTTTTCCCCAAGGTCTGTTGGCATCTGGAACTGCAAATGTTTCTGAGTCCAACCCTCCTGGTCTGGAGCAAGTACATGCACCAGGAAAGTTACCTAATCAAAGTGCTGATTTTACGGCCATTGCTTCAGCTGCATCAACTGCAATGAAGAATAGCAGCGAGAAGGAAAGTATGATCGATACTGATTTGCTTATTAAGATTCTTAACGATCCGAAAATGCTCCAGAAATTGATTAATGTACATGGACCACAAGCCAATACAGGAATTGCATCAGTGAATACACATACTGCACCAAGTTCAAAGACGGTAACTCCCTATGTTCCCTCATCCCTTTCAAACTCTGATATGCAAAGGACTCCAGATGGTAACTTCCACATGCCAGGTAAAGTGGGTACTACTTTGAATGCAATCCCTCTTCAACCAGATACTGTTCAATTATCTGGGTTAAAGCGACCTGCACCATCACCACCATTACCTTCCTCGTCCAGCCCACAAGCTGACCATGTTCAATCTGGGTTAAAGCGACCTGCGCCATCGCCACCATTACCTTCCTTGCCCAGCCCTCAAGCTGACCATGTTCTACTACCCAGACTGCCAAATCAGGCACAACCCCCATTAAGTGCATCGCCTGAACAGAACATGGTCCCCTTAGGATCTTTCCCAGCCCAGGAACCCGGAATTGTCAAGGACATGAACTACTATAAGAACCTCATTAGGCAACATGGAACAGAAAATAAAGAAATGCAGGACCCCATTTTGCTCAAAAATGGTAACAATCATAATCACTTGGTGGACTTGAAAATGTCTGTAAACTCTAATCCAGCAGAAATGAGGGCCAAGAAATCGAAACATTGCATGTTTTTCAAAACTGCCAAGGGATGTCGTAAGGGTGCTAATTGTGAATACGTCCATGACATGTCGTTAAATTGGCGAACTGGAATGGAGGCCCAAAGTGCCAAGAGAATGAAACTAAATGGGGTTAATAAGGGGAGGAGTATGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

479

Amino Acids

52.27

Weight (kDa)

8.16

Isoelectric Point (pI)

59.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011509)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11990 FvH4_1g11990 FvH4_1g11990 FvH4_1g11990 FvH4_1g11990
malus_domestica	MD02G1134000.v1.1 MD15G1247000.v1.1
prunus_persica	Prupe.7G166800_v2.0.a1
pyrus_communis	pycom02g10560 pycom15g21720
rosa_chinensis	RchiOBHm_Chr2g0099611
rosa_laevigata	RLG00000016896
rosa_multiflora	Rmu_sc0005120.1_g000013
rosa_roxburghii	Rroxscaffold_2G00142920
rosa_rugosa	Rorug02G0081500
rosa_samantha	Rh2AG131000 Rh2BG134200 Rh2CG135100 Rh2DG135600
rosa_wichuraiana	Rw2G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	898, 970
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	2 cut(s)	638, 1096
AcoI	YGGCCR	1 cut(s)	552
AcuI	CTGAAG	1 cut(s)	546
AdeI	CACNNNGTG	1 cut(s)	1225
AfaI	GTAC	3 cut(s)	510, 675, 829
AfiI	CCNNNNNNNGG	1 cut(s)	1102
AflIII	ACRYGT	1 cut(s)	1350
AjnI	CCWGG	6 cut(s)	79, 433, 493, 517, 814, 1101
AluBI	AGCT	6 cut(s)	118, 166, 430, 566, 932, 1004
AluI	AGCT	6 cut(s)	118, 166, 430, 566, 932, 1004
Alw26I	GTCTC	1 cut(s)	427
AlwI	GGATC	2 cut(s)	638, 1096
AlwNI	CAGNNNCTG	1 cut(s)	863
AoxI	GGCC	3 cut(s)	552, 1269, 1380
ApeKI	GCWGC	3 cut(s)	118, 566, 591
AseI	ATTAAT	1 cut(s)	669
AspLEI	GCGC	1 cut(s)	967
AspS9I	GGNCC	5 cut(s)	680, 1078, 1183, 1269, 1381
AsuC2I	CCSGG	1 cut(s)	1110
AsuHPI	GGTGA	2 cut(s)	212, 891
AvaII	GGWCC	3 cut(s)	680, 1078, 1183
AxyI	CCTNAGG	1 cut(s)	1084
BbsI	GAAGAC	1 cut(s)	35
BbvI	GCAGC	3 cut(s)	105, 553, 603
BccI	CCATC	5 cut(s)	140, 362, 791, 904, 976
BceAI	ACGGC	2 cut(s)	196, 567
BciT130I	CCWGG	6 cut(s)	81, 435, 495, 519, 816, 1103
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	1110
BcoDI	GTCTC	1 cut(s)	427
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	417
BfuAI	ACCTGC	2 cut(s)	898, 970
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	3 cut(s)	119, 567, 592
BlsI	GCNGC	3 cut(s)	120, 568, 593
Bme1390I	CCNGG	7 cut(s)	81, 435, 495, 519, 816, 1103, 1110
Bme18I	GGWCC	3 cut(s)	680, 1078, 1183
BmgT120I	GGNCC	5 cut(s)	680, 1078, 1183, 1269, 1381
BmiI	GGNNCC	3 cut(s)	1080, 1107, 1185
BmrFI	CCNGG	7 cut(s)	81, 435, 495, 519, 816, 1103, 1110
BmsI	GCATC	5 cut(s)	203, 467, 578, 713, 1067
BpiI	GAAGAC	1 cut(s)	35
BpmI	CTGGAG	3 cut(s)	521, 641, 777
BpuEI	CTTGAG	2 cut(s)	272, 984
BpuMI	CCSGG	1 cut(s)	1110
Bsa29I	ATCGAT	1 cut(s)	612
BsaJI	CCNNGG	5 cut(s)	80, 219, 445, 1101, 1308
BsaXI	ACNNNNNCTCC	2 cut(s)	730, 760
Bsc4I	CCNNNNNNNGG	1 cut(s)	1102
Bse1I	ACTGG	3 cut(s)	51, 404, 1375
Bse21I	CCTNAGG	1 cut(s)	1084
Bse3DI	GCAATG	4 cut(s)	158, 555, 585, 1285
BseBI	CCWGG	6 cut(s)	81, 435, 495, 519, 816, 1103
BseCI	ATCGAT	1 cut(s)	612
BseDI	CCNNGG	5 cut(s)	80, 219, 445, 1101, 1308
BseGI	GGATG	3 cut(s)	132, 761, 1319
BseLI	CCNNNNNNNGG	1 cut(s)	1102
BseMI	GCAATG	4 cut(s)	158, 555, 585, 1285
BseMII	CTCAG	3 cut(s)	152, 440, 471
BseNI	ACTGG	3 cut(s)	51, 404, 1375
BseXI	GCAGC	3 cut(s)	105, 553, 603
BseYI	CCCAGC	2 cut(s)	992, 1096
BsgI	GTGCAG	2 cut(s)	708, 876
BshFI	GGCC	3 cut(s)	554, 1271, 1382
BshVI	ATCGAT	1 cut(s)	612
BsiSI	CCGG	1 cut(s)	1110
BslFI	GGGAC	2 cut(s)	361, 1064
BslI	CCNNNNNNNGG	1 cut(s)	1102
BsmAI	GTCTC	1 cut(s)	427
BsmFI	GGGAC	2 cut(s)	361, 1064
BsmI	GAATGC	2 cut(s)	46, 844
BsnI	GGCC	3 cut(s)	554, 1271, 1382
Bsp1407I	TGTACA	1 cut(s)	673
Bsp143I	GATC	6 cut(s)	328, 385, 394, 609, 643, 1088
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	3 cut(s)	554, 1271, 1382
BspCNI	CTCAG	3 cut(s)	151, 439, 472
BspDI	ATCGAT	1 cut(s)	612
BspLI	GGNNCC	3 cut(s)	1080, 1107, 1185
BspMI	ACCTGC	2 cut(s)	898, 970
BspPI	GGATC	2 cut(s)	638, 1096
BsrDI	GCAATG	4 cut(s)	158, 555, 585, 1285
BsrGI	TGTACA	1 cut(s)	673
BsrI	ACTGG	3 cut(s)	51, 404, 1375
BssECI	CCNNGG	5 cut(s)	80, 219, 445, 1101, 1308
BssMI	GATC	6 cut(s)	328, 385, 394, 609, 643, 1088
BssT1I	CCWWGG	3 cut(s)	219, 445, 1308
Bst2UI	CCWGG	6 cut(s)	81, 435, 495, 519, 816, 1103
Bst4CI	ACNGT	3 cut(s)	418, 742, 865
Bst6I	CTCTTC	2 cut(s)	366, 855
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstAUI	TGTACA	1 cut(s)	673
BstC8I	GCNNGC	2 cut(s)	77, 185
BstDEI	CTNAG	6 cut(s)	114, 138, 233, 426, 480, 1084
BstF5I	GGATG	3 cut(s)	132, 761, 1319
BstHHI	GCGC	1 cut(s)	967
BstKTI	GATC	6 cut(s)	331, 388, 397, 612, 646, 1091
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	6 cut(s)	328, 385, 394, 609, 643, 1088
BstMWI	GCNNNNNNNGC	6 cut(s)	115, 172, 566, 575, 964, 1388
BstNI	CCWGG	6 cut(s)	81, 435, 495, 519, 816, 1103
BstNSI	RCATGY	4 cut(s)	515, 814, 1294, 1354
BstSCI	CCNGG	7 cut(s)	79, 433, 493, 517, 814, 1101, 1108
BstSFI	CTRYAG	1 cut(s)	417
BstV1I	GCAGC	3 cut(s)	105, 553, 603
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	2 cut(s)	394, 1088
BstYI	RGATCY	2 cut(s)	394, 1088
Bsu15I	ATCGAT	1 cut(s)	612
Bsu36I	CCTNAGG	1 cut(s)	1084
BsuRI	GGCC	3 cut(s)	554, 1271, 1382
BsuTUI	ATCGAT	1 cut(s)	612
BtgZI	GCGATG	2 cut(s)	954, 1044
BtsCI	GGATG	3 cut(s)	132, 761, 1319
BtsIMutI	CAGTG	2 cut(s)	414, 714
BveI	ACCTGC	2 cut(s)	898, 970
Cac8I	GCNNGC	2 cut(s)	77, 185
CaiI	CAGNNNCTG	1 cut(s)	863
CfoI	GCGC	1 cut(s)	967
Cfr13I	GGNCC	5 cut(s)	680, 1078, 1183, 1269, 1381
ClaI	ATCGAT	1 cut(s)	612
CsiI	ACCWGGT	1 cut(s)	433
Csp6I	GTAC	3 cut(s)	509, 674, 828
CviQI	GTAC	3 cut(s)	509, 674, 828
DdeI	CTNAG	6 cut(s)	114, 138, 233, 426, 480, 1084
DpnI	GATC	6 cut(s)	330, 387, 396, 611, 645, 1090
DpnII	GATC	6 cut(s)	328, 385, 394, 609, 643, 1088
DraIII	CACNNNGTG	1 cut(s)	1225
EaeI	YGGCCR	1 cut(s)	552
Eam1104I	CTCTTC	2 cut(s)	366, 855
EarI	CTCTTC	2 cut(s)	366, 855
Eco130I	CCWWGG	3 cut(s)	219, 445, 1308
Eco47I	GGWCC	3 cut(s)	680, 1078, 1183
Eco57I	CTGAAG	1 cut(s)	546
Eco81I	CCTNAGG	1 cut(s)	1084
EcoO109I	RGGNCCY	1 cut(s)	1183
EcoRII	CCWGG	6 cut(s)	79, 433, 493, 517, 814, 1101
EcoT14I	CCWWGG	3 cut(s)	219, 445, 1308
ErhI	CCWWGG	3 cut(s)	219, 445, 1308
FaqI	GGGAC	2 cut(s)	361, 1064
FauI	CCCGC	1 cut(s)	84
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	119, 567, 592
FokI	GGATG	3 cut(s)	119, 748, 1326
Fsp4HI	GCNGC	3 cut(s)	119, 567, 592
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	1 cut(s)	966
GluI	GCNGC	3 cut(s)	119, 567, 592
GsaI	CCCAGC	2 cut(s)	996, 1100
GsuI	CTGGAG	3 cut(s)	521, 641, 777
HaeIII	GGCC	3 cut(s)	554, 1271, 1382
HapII	CCGG	1 cut(s)	1110
HhaI	GCGC	1 cut(s)	967
Hin6I	GCGC	1 cut(s)	965
HinP1I	GCGC	1 cut(s)	965
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	4 cut(s)	374, 482, 634, 790
HpaII	CCGG	1 cut(s)	1110
HphI	GGTGA	2 cut(s)	212, 891
Hpy166II	GTNNAC	3 cut(s)	409, 1228, 1246
Hpy188I	TCNGA	4 cut(s)	141, 481, 648, 778
Hpy188III	TCNNGA	5 cut(s)	389, 462, 500, 658, 794
Hpy8I	GTNNAC	3 cut(s)	409, 1228, 1246
HpyAV	CCTTC	4 cut(s)	168, 592, 921, 993
HpyCH4III	ACNGT	3 cut(s)	418, 742, 865
HpyCH4IV	ACGT	2 cut(s)	309, 1341
HpyF10VI	GCNNNNNNNGC	6 cut(s)	115, 172, 566, 575, 964, 1388
HpyF3I	CTNAG	6 cut(s)	114, 138, 233, 426, 480, 1084
HpySE526I	ACGT	2 cut(s)	309, 1341
HspAI	GCGC	1 cut(s)	965
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	6 cut(s)	328, 385, 394, 609, 643, 1088
LmnI	GCTCC	2 cut(s)	502, 660
Lsp1109I	GCAGC	3 cut(s)	105, 553, 603
LweI	GCATC	5 cut(s)	203, 467, 578, 713, 1067
MabI	ACCWGGT	1 cut(s)	433
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	2 cut(s)	309, 1341
MaeIII	GTNAC	5 cut(s)	176, 525, 742, 800, 1205
MalI	GATC	6 cut(s)	330, 387, 396, 611, 645, 1090
MboI	GATC	6 cut(s)	328, 385, 394, 609, 643, 1088
MboII	GAAGA	8 cut(s)	40, 224, 380, 383, 395, 404, 595, 842
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	2 cut(s)	394, 1088
MluCI	AATT	8 cut(s)	279, 363, 662, 699, 869, 1113, 1330, 1360
MlyI	GAGTC	3 cut(s)	383, 491, 784
MmeI	TCCRAC	1 cut(s)	510
MseI	TTAA	8 cut(s)	630, 639, 669, 881, 953, 1052, 1358, 1416
MspA1I	CMGCKG	1 cut(s)	566
MspI	CCGG	1 cut(s)	1110
MspR9I	CCNGG	7 cut(s)	81, 435, 495, 519, 816, 1103, 1110
MunI	CAATTG	1 cut(s)	363
Mva1269I	GAATGC	2 cut(s)	46, 844
MvaI	CCWGG	6 cut(s)	81, 435, 495, 519, 816, 1103
MwoI	GCNNNNNNNGC	6 cut(s)	115, 172, 566, 575, 964, 1388
NciI	CCSGG	1 cut(s)	1110
NdeII	GATC	6 cut(s)	328, 385, 394, 609, 643, 1088
NlaIV	GGNNCC	3 cut(s)	1080, 1107, 1185
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	4 cut(s)	515, 814, 1294, 1354
PciI	ACATGT	1 cut(s)	1350
PctI	GAATGC	2 cut(s)	46, 844
PfeI	GAWTC	1 cut(s)	634
PkrI	GCNGC	3 cut(s)	120, 568, 593
PleI	GAGTC	3 cut(s)	382, 490, 784
PpsI	GAGTC	3 cut(s)	382, 490, 784
PpuMI	RGGWCCY	1 cut(s)	1183
PscI	ACATGT	1 cut(s)	1350
PshBI	ATTAAT	1 cut(s)	669
Psp5II	RGGWCCY	1 cut(s)	1183
Psp6I	CCWGG	6 cut(s)	79, 433, 493, 517, 814, 1101
PspFI	CCCAGC	2 cut(s)	992, 1096
PspGI	CCWGG	6 cut(s)	79, 433, 493, 517, 814, 1101
PspN4I	GGNNCC	3 cut(s)	1080, 1107, 1185
PspPI	GGNCC	5 cut(s)	680, 1078, 1183, 1269, 1381
PspPPI	RGGWCCY	1 cut(s)	1183
PstNI	CAGNNNCTG	1 cut(s)	863
PsuI	RGATCY	2 cut(s)	394, 1088
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	3 cut(s)	510, 675, 829
RsaNI	GTAC	3 cut(s)	509, 674, 828
SaqAI	TTAA	8 cut(s)	630, 639, 669, 881, 953, 1052, 1358, 1416
SatI	GCNGC	3 cut(s)	119, 567, 592
Sau3AI	GATC	6 cut(s)	328, 385, 394, 609, 643, 1088
Sau96I	GGNCC	5 cut(s)	680, 1078, 1183, 1269, 1381
SchI	GAGTC	3 cut(s)	383, 491, 784
ScrFI	CCNGG	7 cut(s)	81, 435, 495, 519, 816, 1103, 1110
SexAI	ACCWGGT	1 cut(s)	433
SfaNI	GCATC	5 cut(s)	203, 467, 578, 713, 1067
SfcI	CTRYAG	1 cut(s)	417
SinI	GGWCC	3 cut(s)	680, 1078, 1183
SmlI	CTYRAG	2 cut(s)	251, 999
SmoI	CTYRAG	2 cut(s)	251, 999
Sse9I	AATT	8 cut(s)	279, 363, 662, 699, 869, 1113, 1330, 1360
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	7 cut(s)	79, 433, 493, 517, 814, 1101, 1108
StyI	CCWWGG	3 cut(s)	219, 445, 1308
TaaI	ACNGT	3 cut(s)	418, 742, 865
TaiI	ACGT	2 cut(s)	312, 1344
TaqI	TCGA	2 cut(s)	612, 1280
TasI	AATT	8 cut(s)	279, 363, 662, 699, 869, 1113, 1330, 1360
TatI	WGTACW	2 cut(s)	508, 673
TfiI	GAWTC	1 cut(s)	634
Tru1I	TTAA	8 cut(s)	630, 639, 669, 881, 953, 1052, 1358, 1416
Tru9I	TTAA	8 cut(s)	630, 639, 669, 881, 953, 1052, 1358, 1416
TscAI	CASTG	2 cut(s)	421, 714
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	3 cut(s)	118, 566, 591
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	4 cut(s)	17, 596, 1142, 1415
TspRI	CASTG	2 cut(s)	421, 714
VpaK11BI	GGWCC	3 cut(s)	680, 1078, 1183
VspI	ATTAAT	1 cut(s)	669
XceI	RCATGY	4 cut(s)	515, 814, 1294, 1354
XcmI	CCANNNNNNNNNTGG	1 cut(s)	944
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.