zinc finger CCCH domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g11990 FvH4_1g11990 FvH4_1g11990 FvH4_1g11990 FvH4_1g11990 |
| malus_domestica | MD02G1134000.v1.1 MD15G1247000.v1.1 |
| prunus_persica | Prupe.7G166800_v2.0.a1 |
| pyrus_communis | pycom02g10560 pycom15g21720 |
| rosa_chinensis | RchiOBHm_Chr2g0099611 |
| rosa_laevigata | RLG00000016896 |
| rosa_multiflora | Rmu_sc0005120.1_g000013 |
| rosa_roxburghii | Rroxscaffold_2G00142920 |
| rosa_rugosa | Rorug02G0081500 |
| rosa_samantha | Rh2AG131000 Rh2BG134200 Rh2CG135100 Rh2DG135600 |
| rosa_wichuraiana | Rw2G010110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 902 |
| Acc36I | ACCTGC | 2 cut(s) | 902, 926 |
| AccBSI | CCGCTC | 1 cut(s) | 1150 |
| AccII | CGCG | 2 cut(s) | 154, 1160 |
| AciI | CCGC | 8 cut(s) | 13, 154, 659, 672, 999, 1148, 1154, 1158 |
| AclWI | GGATC | 2 cut(s) | 766, 805 |
| AcoI | YGGCCR | 2 cut(s) | 542, 804 |
| AcsI | RAATTY | 5 cut(s) | 4, 750, 920, 1244, 1370 |
| AcuI | CTGAAG | 3 cut(s) | 105, 435, 663 |
| AcyI | GRCGYC | 1 cut(s) | 285 |
| AfaI | GTAC | 2 cut(s) | 940, 1328 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 39, 220, 243, 935, 1088, 1138 |
| AflIII | ACRYGT | 1 cut(s) | 172 |
| AjiI | CACGTC | 1 cut(s) | 1384 |
| AjnI | CCWGG | 4 cut(s) | 184, 287, 492, 964 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 162, 194 |
| AluBI | AGCT | 5 cut(s) | 30, 302, 422, 587, 1115 |
| AluI | AGCT | 5 cut(s) | 30, 302, 422, 587, 1115 |
| Alw21I | GWGCWC | 3 cut(s) | 32, 357, 1117 |
| AlwI | GGATC | 2 cut(s) | 766, 805 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 941 |
| Ama87I | CYCGRG | 1 cut(s) | 576 |
| AoxI | GGCC | 5 cut(s) | 197, 542, 549, 804, 1420 |
| ApeKI | GCWGC | 4 cut(s) | 299, 674, 839, 1054 |
| ApoI | RAATTY | 5 cut(s) | 4, 750, 920, 1244, 1370 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1373, 1405 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 833 |
| AspA2I | CCTAGG | 1 cut(s) | 1049 |
| AspLEI | GCGC | 2 cut(s) | 844, 1147 |
| AspS9I | GGNCC | 2 cut(s) | 581, 1420 |
| AsuC2I | CCSGG | 3 cut(s) | 795, 985, 1290 |
| AsuHPI | GGTGA | 4 cut(s) | 317, 632, 636, 999 |
| AvaI | CYCGRG | 1 cut(s) | 576 |
| AvaII | GGWCC | 1 cut(s) | 581 |
| AvrII | CCTAGG | 1 cut(s) | 1049 |
| AxyI | CCTNAGG | 1 cut(s) | 606 |
| BalI | TGGCCA | 1 cut(s) | 806 |
| BanII | GRGCYC | 3 cut(s) | 32, 1117, 1340 |
| Bbv12I | GWGCWC | 3 cut(s) | 32, 357, 1117 |
| BbvI | GCAGC | 4 cut(s) | 311, 661, 826, 1066 |
| BccI | CCATC | 4 cut(s) | 245, 874, 1012, 1442 |
| BceAI | ACGGC | 3 cut(s) | 212, 1335, 1372 |
| BciT130I | CCWGG | 4 cut(s) | 186, 289, 494, 966 |
| BciVI | GTATCC | 1 cut(s) | 1113 |
| BclI | TGATCA | 1 cut(s) | 622 |
| BcnI | CCSGG | 3 cut(s) | 795, 985, 1290 |
| BfaI | CTAG | 3 cut(s) | 635, 648, 1050 |
| BfmI | CTRYAG | 1 cut(s) | 909 |
| BfoI | RGCGCY | 1 cut(s) | 1148 |
| BfuAI | ACCTGC | 2 cut(s) | 902, 926 |
| BfuI | GTATCC | 1 cut(s) | 1113 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1356 |
| BisI | GCNGC | 6 cut(s) | 300, 672, 675, 840, 1055, 1148 |
| BlnI | CCTAGG | 1 cut(s) | 1049 |
| BlpI | GCTNAGC | 1 cut(s) | 423 |
| BlsI | GCNGC | 6 cut(s) | 301, 673, 676, 841, 1056, 1149 |
| BmcAI | AGTACT | 1 cut(s) | 1328 |
| Bme1390I | CCNGG | 7 cut(s) | 186, 289, 494, 795, 966, 985, 1290 |
| Bme18I | GGWCC | 1 cut(s) | 581 |
| BmeT110I | CYCGRG | 1 cut(s) | 576 |
| BmgBI | CACGTC | 1 cut(s) | 1384 |
| BmgT120I | GGNCC | 2 cut(s) | 581, 1420 |
| BmiI | GGNNCC | 4 cut(s) | 52, 582, 1339, 1421 |
| BmrFI | CCNGG | 7 cut(s) | 186, 289, 494, 795, 966, 985, 1290 |
| BmrI | ACTGGG | 1 cut(s) | 1021 |
| BmsI | GCATC | 3 cut(s) | 133, 581, 1337 |
| BmuI | ACTGGG | 1 cut(s) | 1021 |
| BpmI | CTGGAG | 1 cut(s) | 69 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 423 |
| BpuEI | CTTGAG | 1 cut(s) | 1053 |
| BpuMI | CCSGG | 3 cut(s) | 795, 985, 1290 |
| Bsa29I | ATCGAT | 1 cut(s) | 729 |
| BsaHI | GRCGYC | 1 cut(s) | 285 |
| BsaJI | CCNNGG | 6 cut(s) | 184, 185, 242, 492, 559, 1049 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 847, 877 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 39, 220, 243, 935, 1088, 1138 |
| Bse118I | RCCGGY | 3 cut(s) | 547, 617, 1123 |
| Bse1I | ACTGG | 2 cut(s) | 807, 1027 |
| Bse21I | CCTNAGG | 1 cut(s) | 606 |
| Bse3DI | GCAATG | 1 cut(s) | 1101 |
| BseBI | CCWGG | 4 cut(s) | 186, 289, 494, 966 |
| BseCI | ATCGAT | 1 cut(s) | 729 |
| BseDI | CCNNGG | 6 cut(s) | 184, 185, 242, 492, 559, 1049 |
| BseGI | GGATG | 5 cut(s) | 237, 351, 418, 667, 1352 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 39, 220, 243, 935, 1088, 1138 |
| BseMI | GCAATG | 1 cut(s) | 1101 |
| BseMII | CTCAG | 2 cut(s) | 414, 620 |
| BseNI | ACTGG | 2 cut(s) | 807, 1027 |
| BseRI | GAGGAG | 1 cut(s) | 594 |
| BseXI | GCAGC | 4 cut(s) | 311, 661, 826, 1066 |
| Bsh1236I | CGCG | 2 cut(s) | 154, 1160 |
| Bsh1285I | CGRYCG | 1 cut(s) | 17 |
| BshFI | GGCC | 5 cut(s) | 199, 544, 551, 806, 1422 |
| BshVI | ATCGAT | 1 cut(s) | 729 |
| BsiEI | CGRYCG | 1 cut(s) | 17 |
| BsiHKAI | GWGCWC | 3 cut(s) | 32, 357, 1117 |
| BsiHKCI | CYCGRG | 1 cut(s) | 576 |
| BsiSI | CCGG | 6 cut(s) | 548, 618, 795, 984, 1124, 1290 |
| BslFI | GGGAC | 3 cut(s) | 440, 475, 1007 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 39, 220, 243, 935, 1088, 1138 |
| BsmFI | GGGAC | 3 cut(s) | 440, 475, 1007 |
| BsmI | GAATGC | 1 cut(s) | 952 |
| BsnI | GGCC | 5 cut(s) | 199, 544, 551, 806, 1422 |
| BsoBI | CYCGRG | 1 cut(s) | 576 |
| Bsp1286I | GDGCHC | 4 cut(s) | 32, 357, 1117, 1340 |
| Bsp143I | GATC | 5 cut(s) | 55, 622, 726, 771, 797 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 423 |
| BspACI | CCGC | 8 cut(s) | 13, 154, 659, 672, 999, 1148, 1154, 1158 |
| BspANI | GGCC | 5 cut(s) | 199, 544, 551, 806, 1422 |
| BspCNI | CTCAG | 2 cut(s) | 415, 619 |
| BspDI | ATCGAT | 1 cut(s) | 729 |
| BspFNI | CGCG | 2 cut(s) | 154, 1160 |
| BspLI | GGNNCC | 4 cut(s) | 52, 582, 1339, 1421 |
| BspMAI | CTGCAG | 1 cut(s) | 913 |
| BspMI | ACCTGC | 2 cut(s) | 902, 926 |
| BspPI | GGATC | 2 cut(s) | 766, 805 |
| BsrBI | CCGCTC | 1 cut(s) | 1150 |
| BsrDI | GCAATG | 1 cut(s) | 1101 |
| BsrFI | RCCGGY | 3 cut(s) | 547, 617, 1123 |
| BsrI | ACTGG | 2 cut(s) | 807, 1027 |
| BssAI | RCCGGY | 3 cut(s) | 547, 617, 1123 |
| BssECI | CCNNGG | 6 cut(s) | 184, 185, 242, 492, 559, 1049 |
| BssMI | GATC | 5 cut(s) | 55, 622, 726, 771, 797 |
| BssNI | GRCGYC | 1 cut(s) | 285 |
| BssT1I | CCWWGG | 2 cut(s) | 559, 1049 |
| Bst2UI | CCWGG | 4 cut(s) | 186, 289, 494, 966 |
| Bst4CI | ACNGT | 1 cut(s) | 943 |
| Bst6I | CTCTTC | 4 cut(s) | 85, 480, 888, 963 |
| BstACI | GRCGYC | 1 cut(s) | 285 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 692, 818, 1384 |
| BstC8I | GCNNGC | 2 cut(s) | 1043, 1158 |
| BstDEI | CTNAG | 2 cut(s) | 423, 606 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 933, 1136 |
| BstF5I | GGATG | 5 cut(s) | 237, 351, 418, 667, 1352 |
| BstFNI | CGCG | 2 cut(s) | 154, 1160 |
| BstH2I | RGCGCY | 1 cut(s) | 1148 |
| BstHHI | GCGC | 2 cut(s) | 844, 1147 |
| BstKTI | GATC | 5 cut(s) | 58, 625, 729, 774, 800 |
| BstMBI | GATC | 5 cut(s) | 55, 622, 726, 771, 797 |
| BstMCI | CGRYCG | 1 cut(s) | 17 |
| BstNI | CCWGG | 4 cut(s) | 186, 289, 494, 966 |
| BstNSI | RCATGY | 1 cut(s) | 176 |
| BstSCI | CCNGG | 7 cut(s) | 184, 287, 492, 793, 964, 983, 1288 |
| BstSFI | CTRYAG | 1 cut(s) | 909 |
| BstUI | CGCG | 2 cut(s) | 154, 1160 |
| BstV1I | GCAGC | 4 cut(s) | 311, 661, 826, 1066 |
| Bsu15I | ATCGAT | 1 cut(s) | 729 |
| Bsu36I | CCTNAGG | 1 cut(s) | 606 |
| BsuI | GTATCC | 1 cut(s) | 1113 |
| BsuRI | GGCC | 5 cut(s) | 199, 544, 551, 806, 1422 |
| BsuTUI | ATCGAT | 1 cut(s) | 729 |
| BtrI | CACGTC | 1 cut(s) | 1384 |
| BtsCI | GGATG | 5 cut(s) | 237, 351, 418, 667, 1352 |
| BtsIMutI | CAGTG | 1 cut(s) | 800 |
| BveI | ACCTGC | 2 cut(s) | 902, 926 |
| Cac8I | GCNNGC | 2 cut(s) | 1043, 1158 |
| CaiI | CAGNNNCTG | 1 cut(s) | 941 |
| CfoI | GCGC | 2 cut(s) | 844, 1147 |
| Cfr10I | RCCGGY | 3 cut(s) | 547, 617, 1123 |
| Cfr13I | GGNCC | 2 cut(s) | 581, 1420 |
| ClaI | ATCGAT | 1 cut(s) | 729 |
| CseI | GACGC | 2 cut(s) | 129, 293 |
| CsiI | ACCWGGT | 1 cut(s) | 964 |
| Csp6I | GTAC | 2 cut(s) | 939, 1327 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 534, 569 |
| CviAII | CATG | 5 cut(s) | 173, 1192, 1199, 1264, 1379 |
| CviQI | GTAC | 2 cut(s) | 939, 1327 |
| DdeI | CTNAG | 2 cut(s) | 423, 606 |
| DpnI | GATC | 5 cut(s) | 57, 624, 728, 773, 799 |
| DpnII | GATC | 5 cut(s) | 55, 622, 726, 771, 797 |
| DraI | TTTAAA | 1 cut(s) | 1285 |
| EaeI | YGGCCR | 2 cut(s) | 542, 804 |
| Eam1104I | CTCTTC | 4 cut(s) | 85, 480, 888, 963 |
| EarI | CTCTTC | 4 cut(s) | 85, 480, 888, 963 |
| Ecl136II | GAGCTC | 2 cut(s) | 30, 1115 |
| Eco130I | CCWWGG | 2 cut(s) | 559, 1049 |
| Eco24I | GRGCYC | 3 cut(s) | 32, 1117, 1340 |
| Eco47I | GGWCC | 1 cut(s) | 581 |
| Eco53kI | GAGCTC | 2 cut(s) | 30, 1115 |
| Eco57I | CTGAAG | 3 cut(s) | 105, 435, 663 |
| Eco81I | CCTNAGG | 1 cut(s) | 606 |
| Eco88I | CYCGRG | 1 cut(s) | 576 |
| EcoICRI | GAGCTC | 2 cut(s) | 30, 1115 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 933, 1136 |
| EcoRII | CCWGG | 4 cut(s) | 184, 287, 492, 964 |
| EcoT14I | CCWWGG | 2 cut(s) | 559, 1049 |
| EcoT38I | GRGCYC | 3 cut(s) | 32, 1117, 1340 |
| ErhI | CCWWGG | 2 cut(s) | 559, 1049 |
| FaeI | CATG | 5 cut(s) | 176, 1195, 1202, 1267, 1382 |
| FaqI | GGGAC | 3 cut(s) | 440, 475, 1007 |
| FatI | CATG | 5 cut(s) | 172, 1191, 1198, 1263, 1378 |
| FauI | CCCGC | 3 cut(s) | 1006, 1161, 1165 |
| FbaI | TGATCA | 1 cut(s) | 622 |
| Fnu4HI | GCNGC | 6 cut(s) | 300, 672, 675, 840, 1055, 1148 |
| FokI | GGATG | 5 cut(s) | 224, 358, 425, 674, 1359 |
| FriOI | GRGCYC | 3 cut(s) | 32, 1117, 1340 |
| Fsp4HI | GCNGC | 6 cut(s) | 300, 672, 675, 840, 1055, 1148 |
| FspBI | CTAG | 3 cut(s) | 635, 648, 1050 |
| GlaI | GCGC | 2 cut(s) | 843, 1146 |
| GluI | GCNGC | 6 cut(s) | 300, 672, 675, 840, 1055, 1148 |
| GsuI | CTGGAG | 1 cut(s) | 69 |
| HaeII | RGCGCY | 1 cut(s) | 1148 |
| HaeIII | GGCC | 5 cut(s) | 199, 544, 551, 806, 1422 |
| HapII | CCGG | 6 cut(s) | 548, 618, 795, 984, 1124, 1290 |
| HgaI | GACGC | 2 cut(s) | 129, 293 |
| HhaI | GCGC | 2 cut(s) | 844, 1147 |
| Hin1I | GRCGYC | 1 cut(s) | 285 |
| Hin1II | CATG | 5 cut(s) | 176, 1195, 1202, 1267, 1382 |
| Hin6I | GCGC | 2 cut(s) | 842, 1145 |
| HinP1I | GCGC | 2 cut(s) | 842, 1145 |
| HinfI | GANTC | 4 cut(s) | 247, 488, 524, 1309 |
| HpaII | CCGG | 6 cut(s) | 548, 618, 795, 984, 1124, 1290 |
| HphI | GGTGA | 4 cut(s) | 317, 632, 636, 999 |
| Hpy188I | TCNGA | 6 cut(s) | 85, 246, 511, 529, 895, 1314 |
| Hpy188III | TCNNGA | 6 cut(s) | 48, 277, 608, 700, 775, 1255 |
| Hpy99I | CGWCG | 1 cut(s) | 437 |
| HpyAV | CCTTC | 5 cut(s) | 273, 459, 513, 639, 709 |
| HpyCH4III | ACNGT | 1 cut(s) | 943 |
| HpyCH4IV | ACGT | 2 cut(s) | 1100, 1383 |
| HpyF3I | CTNAG | 2 cut(s) | 423, 606 |
| HpySE526I | ACGT | 2 cut(s) | 1100, 1383 |
| Hsp92I | GRCGYC | 1 cut(s) | 285 |
| Hsp92II | CATG | 5 cut(s) | 176, 1195, 1202, 1267, 1382 |
| HspAI | GCGC | 2 cut(s) | 842, 1145 |
| Ksp22I | TGATCA | 1 cut(s) | 622 |
| Kzo9I | GATC | 5 cut(s) | 55, 622, 726, 771, 797 |
| LmnI | GCTCC | 4 cut(s) | 35, 50, 1155, 1343 |
| Lsp1109I | GCAGC | 4 cut(s) | 311, 661, 826, 1066 |
| LweI | GCATC | 3 cut(s) | 133, 581, 1337 |
| MabI | ACCWGGT | 1 cut(s) | 964 |
| MaeI | CTAG | 3 cut(s) | 635, 648, 1050 |
| MaeII | ACGT | 2 cut(s) | 1100, 1383 |
| MaeIII | GTNAC | 4 cut(s) | 428, 664, 1238, 1352 |
| MalI | GATC | 5 cut(s) | 57, 624, 728, 773, 799 |
| MbiI | CCGCTC | 1 cut(s) | 1150 |
| MboI | GATC | 5 cut(s) | 55, 622, 726, 771, 797 |
| MfeI | CAATTG | 1 cut(s) | 468 |
| MhlI | GDGCHC | 4 cut(s) | 32, 357, 1117, 1340 |
| MlsI | TGGCCA | 1 cut(s) | 806 |
| MluNI | TGGCCA | 1 cut(s) | 806 |
| MlyI | GAGTC | 2 cut(s) | 497, 518 |
| MmeI | TCCRAC | 2 cut(s) | 1056, 1365 |
| Mox20I | TGGCCA | 1 cut(s) | 806 |
| MroXI | GAANNNNTTC | 1 cut(s) | 833 |
| MscI | TGGCCA | 1 cut(s) | 806 |
| MseI | TTAA | 6 cut(s) | 786, 1248, 1284, 1332, 1362, 1455 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1268 |
| Msp20I | TGGCCA | 1 cut(s) | 806 |
| MspA1I | CMGCKG | 2 cut(s) | 302, 674 |
| MspI | CCGG | 6 cut(s) | 548, 618, 795, 984, 1124, 1290 |
| MspR9I | CCNGG | 7 cut(s) | 186, 289, 494, 795, 966, 985, 1290 |
| MunI | CAATTG | 1 cut(s) | 468 |
| Mva1269I | GAATGC | 1 cut(s) | 952 |
| MvaI | CCWGG | 4 cut(s) | 186, 289, 494, 966 |
| MvnI | CGCG | 2 cut(s) | 154, 1160 |
| NciI | CCSGG | 3 cut(s) | 795, 985, 1290 |
| NdeII | GATC | 5 cut(s) | 55, 622, 726, 771, 797 |
| NlaIII | CATG | 5 cut(s) | 176, 1195, 1202, 1267, 1382 |
| NlaIV | GGNNCC | 4 cut(s) | 52, 582, 1339, 1421 |
| NmuCI | GTSAC | 1 cut(s) | 664 |
| NspI | RCATGY | 1 cut(s) | 176 |
| PaqCI | CACCTGC | 1 cut(s) | 902 |
| PasI | CCCWGGG | 1 cut(s) | 185 |
| PciI | ACATGT | 1 cut(s) | 172 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 23, 105 |
| PctI | GAATGC | 1 cut(s) | 952 |
| PdmI | GAANNNNTTC | 1 cut(s) | 833 |
| PfeI | GAWTC | 2 cut(s) | 247, 1309 |
| PkrI | GCNGC | 6 cut(s) | 301, 673, 676, 841, 1056, 1149 |
| PleI | GAGTC | 2 cut(s) | 496, 518 |
| PpsI | GAGTC | 2 cut(s) | 496, 518 |
| PscI | ACATGT | 1 cut(s) | 172 |
| Psp124BI | GAGCTC | 2 cut(s) | 32, 1117 |
| Psp6I | CCWGG | 4 cut(s) | 184, 287, 492, 964 |
| PspGI | CCWGG | 4 cut(s) | 184, 287, 492, 964 |
| PspN4I | GGNNCC | 4 cut(s) | 52, 582, 1339, 1421 |
| PspPI | GGNCC | 2 cut(s) | 581, 1420 |
| PstI | CTGCAG | 1 cut(s) | 913 |
| PstNI | CAGNNNCTG | 1 cut(s) | 941 |
| PvuII | CAGCTG | 1 cut(s) | 302 |
| RsaI | GTAC | 2 cut(s) | 940, 1328 |
| RsaNI | GTAC | 2 cut(s) | 939, 1327 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1268 |
| SacI | GAGCTC | 2 cut(s) | 32, 1117 |
| SaqAI | TTAA | 6 cut(s) | 786, 1248, 1284, 1332, 1362, 1455 |
| SatI | GCNGC | 6 cut(s) | 300, 672, 675, 840, 1055, 1148 |
| Sau3AI | GATC | 5 cut(s) | 55, 622, 726, 771, 797 |
| Sau96I | GGNCC | 2 cut(s) | 581, 1420 |
| ScaI | AGTACT | 1 cut(s) | 1328 |
| SchI | GAGTC | 2 cut(s) | 497, 518 |
| ScrFI | CCNGG | 7 cut(s) | 186, 289, 494, 795, 966, 985, 1290 |
| SduI | GDGCHC | 4 cut(s) | 32, 357, 1117, 1340 |
| SexAI | ACCWGGT | 1 cut(s) | 964 |
| SfaNI | GCATC | 3 cut(s) | 133, 581, 1337 |
| SfcI | CTRYAG | 1 cut(s) | 909 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1123 |
| SinI | GGWCC | 1 cut(s) | 581 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1268 |
| SmlI | CTYRAG | 1 cut(s) | 1068 |
| SmoI | CTYRAG | 1 cut(s) | 1068 |
| SsiI | CCGC | 8 cut(s) | 13, 154, 659, 672, 999, 1148, 1154, 1158 |
| SspMI | CTAG | 3 cut(s) | 635, 648, 1050 |
| SstI | GAGCTC | 2 cut(s) | 32, 1117 |
| StyD4I | CCNGG | 7 cut(s) | 184, 287, 492, 793, 964, 983, 1288 |
| StyI | CCWWGG | 2 cut(s) | 559, 1049 |
| TaaI | ACNGT | 1 cut(s) | 943 |
| TaiI | ACGT | 2 cut(s) | 1103, 1386 |
| TaqI | TCGA | 4 cut(s) | 17, 26, 357, 729 |
| TatI | WGTACW | 1 cut(s) | 1326 |
| TauI | GCSGC | 2 cut(s) | 674, 1150 |
| TfiI | GAWTC | 2 cut(s) | 247, 1309 |
| Tru1I | TTAA | 6 cut(s) | 786, 1248, 1284, 1332, 1362, 1455 |
| Tru9I | TTAA | 6 cut(s) | 786, 1248, 1284, 1332, 1362, 1455 |
| TscAI | CASTG | 1 cut(s) | 807 |
| TseFI | GTSAC | 1 cut(s) | 664 |
| TseI | GCWGC | 4 cut(s) | 299, 674, 839, 1054 |
| Tsp45I | GTSAC | 1 cut(s) | 664 |
| TspDTI | ATGAA | 4 cut(s) | 17, 495, 1184, 1280 |
| TspGWI | ACGGA | 4 cut(s) | 22, 182, 1009, 1359 |
| TspRI | CASTG | 1 cut(s) | 807 |
| VpaK11BI | GGWCC | 1 cut(s) | 581 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 933, 1136 |
| XapI | RAATTY | 5 cut(s) | 4, 750, 920, 1244, 1370 |
| XceI | RCATGY | 1 cut(s) | 176 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1034 |
| XmaJI | CCTAGG | 1 cut(s) | 1049 |
| XmnI | GAANNNNTTC | 1 cut(s) | 833 |
| XspI | CTAG | 3 cut(s) | 635, 648, 1050 |
| ZrmI | AGTACT | 1 cut(s) | 1328 |